Gene

KWMTBOMO04008  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010263

Annotation

PREDICTED:_putative_transcription_factor_capicua_[Bombyx_mori]

Location

Bomo_Chr7(+):8163921-8185548      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.581

CDS

ATGGCCAATCCGACTAATCTCGGCAACGCCAGCAGCGGCAACGCTACTCAGTCGACGGTCCATCAAACGCCAACTCAAAACCCAGTGAGGAATCTGCCCAAGAAACGCAAATTTGACCCTTCCTCGCTAGAGGAGATGCAGCAGACCTGTCCCAATAATAACACGATCAACACTTCGACGGCGTCGGTACTCGACTTCCACAACTATCAACGGCCAGTGCTCCAACCATCGCCAATTGTACGGCAATCTCCACCCCAAGACGTGAAGCCGTTTTTCATCCAATACCCAAACATTGATTTGTCCGAATGGCGTGACCACCGAGTTTTGGCCAAGCAACGGGGCTTTTATGTACCCGGAGCGATAAGACATGCCGAAGGTTGTAAAGTGACAGTAGAGTTAGACGGTTATGAAAACGAACCTGTCGAATACAGTGACGTGTTTGGTATGAACAAACTGGATGTTATCGGCGATGCCAGCCCGCAGATGAGCCATTTGCTGATGGGTCTGCCGTGCGTCGTGCGTACCTCTGACCCCAATCGAGAAAACGTTCAAAACGTATTCGTCGAAGGTTTCATCTTAGAGGTGTTAAATTCGCCTATAAGGATACGCGTTGAGGTGAGAGATGGCGACCTATGCAAGCAGGCGGTGGAAGTGAAGCGGGCGGATATCCGGCTGATGCAGCCACCCTGGGCTGATGAACTGGAAGACGCCGGCTCCCACGTGTCCTCGTCACTGCACGCGCATCCAATGCGAGTACACCATCCGCCGCATCAGATCGGCGGCGACCACTTCTACACTTCGTCTCCGATGCCCGGGGCCGGTTCGGGCGTGGTCACGGTCGGGGCGCTTTCGAACGGTTCGATGGACGAGCTCAGGAAGCGAACCTTCGACGACTACCCGGAGAGCGATGACGAATTGCGCCGCGAGGACATCATGTTCTCAACTGACGTATCGCACATGGGTGAGTGA

Protein

MANPTNLGNASSGNATQSTVHQTPTQNPVRNLPKKRKFDPSSLEEMQQTCPNNNTINTSTASVLDFHNYQRPVLQPSPIVRQSPPQDVKPFFIQYPNIDLSEWRDHRVLAKQRGFYVPGAIRHAEGCKVTVELDGYENEPVEYSDVFGMNKLDVIGDASPQMSHLLMGLPCVVRTSDPNRENVQNVFVEGFILEVLNSPIRIRVEVRDGDLCKQAVEVKRADIRLMQPPWADELEDAGSHVSSSLHAHPMRVHHPPHQIGGDHFYTSSPMPGAGSGVVTVGALSNGSMDELRKRTFDDYPESDDELRREDIMFSTDVSHMGE

Uniprot

H9JL62   A0A2H1VJH6   A0A2W1BGI5   A0A2A4JTC4   A0A2A4JV37   A0A2A4JV20   + More
A0A2A4JTW6   A0A0L7L511   A0A194RRA7   A0A194PLE9   A0A212EUE2   A0A1Y1MDL5   E0VC47   A0A067R1P1   V5GBY2   A0A1B6KEX8   A0A2J7QT55   A0A1B6D1A4   A0A2R7WQ87   A0A3Q0JIE1   D6W6A1   A0A023F153   A0A1L7RSY9   A0A2P8Z674   A0A2S2R6V4   A0A158NZV7   A0A195BMV8   F4WID3   A0A026WRL2   J9JWA3   A0A3L8DVD5   A0A195F2M3   A0A154P9L6   A0A2S2P1Z1   A0A151J2H8   A0A195CMQ8   E2ADM3   A0A151XBJ7   U4UNW6   A0A1B6F3P1   A0A087ZX56   A0A146LBQ3   A0A146LTC1   A0A0A9YPM5   T1HAN5   E2B6U9   A0A1B0CSA7   A0A0C9RTH3   A0A336K074   A0A232FHC4   A0A162NUD0   A0A0P5MP10   A0A0P6FNZ8   A0A0N8AB22   A0A0P5T074   A0A0P5M7R7   K7IPC2   A0A1B6HPX7   A0A0P6BQD7   A0A226DAQ7   A0A0P6I3D2   A0A087T8X8  

Pubmed

19121390    28756777    26227816    26354079    22118469    28004739    + More
20566863    24845553    18362917    19820115    25474469    29403074    21347285    21719571    24508170    30249741    20798317    23537049    26823975    25401762    28648823    20075255   

EMBL

BABH01011643    BABH01011644    BABH01011645    BABH01011646    ODYU01002639    SOQ40404.1    + More
KZ150064    PZC74182.1    NWSH01000620    PCG75261.1    PCG75262.1    PCG75260.1    PCG75259.1    JTDY01002986    KOB70364.1    KQ459995    KPJ18571.1    KQ459600    KPI94261.1    AGBW02012402    OWR45113.1    GEZM01036449    GEZM01036448    JAV82690.1    DS235047    EEB10953.1    KK852771    KDR16881.1    GALX01000801    JAB67665.1    GEBQ01030243    JAT09734.1    NEVH01011202    PNF31757.1    GEDC01017830    JAS19468.1    KK855216    PTY21491.1    KQ971306    EFA11573.1    GBBI01003961    JAC14751.1    LN623700    CEG62428.1    PYGN01000176    PSN51999.1    GGMS01015889    MBY85092.1    ADTU01005030    KQ976440    KYM86502.1    GL888175    EGI66064.1    KK107139    EZA57739.1    ABLF02026651    QOIP01000003    RLU24397.1    KQ981856    KYN34636.1    KQ434835    KZC07918.1    GGMR01010775    MBY23394.1    KQ980404    KYN16206.1    KQ977580    KYN01752.1    GL438820    EFN68385.1    KQ982330    KYQ57668.1    KB632399    ERL94807.1    GECZ01024890    JAS44879.1    GDHC01012875    JAQ05754.1    GDHC01008959    JAQ09670.1    GBHO01010556    JAG33048.1    ACPB03012381    GL446009    EFN88590.1    AJWK01025856    AJWK01025857    GBYB01012045    JAG81812.1    UFQS01000027    UFQT01000027    SSW97767.1    SSX18153.1    NNAY01000229    OXU29858.1    LRGB01000536    KZS18269.1    GDIQ01164954    JAK86771.1    GDIQ01055286    JAN39451.1    GDIP01164961    GDIP01084623    JAJ58441.1    GDIP01133016    JAL70698.1    GDIQ01162246    JAK89479.1    GECU01030968    GECU01014157    JAS76738.1    JAS93549.1    GDIP01015062    JAM88653.1    LNIX01000025    OXA42622.1    GDIQ01011099    JAN83638.1    KK114024    KFM61567.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053240    UP000053268    UP000007151    + More
UP000009046    UP000027135    UP000235965    UP000079169    UP000007266    UP000245037    UP000005205    UP000078540    UP000007755    UP000053097    UP000007819    UP000279307    UP000078541    UP000076502    UP000078492    UP000078542    UP000000311    UP000075809    UP000030742    UP000005203    UP000015103    UP000008237    UP000092461    UP000215335    UP000076858    UP000002358    UP000198287    UP000054359   

PRIDE

H9JL62   

Pfam

PF16090   DUF4819        + More
PF00505   HMG_box

Interpro

IPR036910   HMG_box_dom_sf        + More
IPR009071   HMG_box_dom       
IPR032147   DUF4819       

SUPFAM

SSF47095   SSF47095       

Gene 3D

1.10.30.10    

ProteinModelPortal

H9JL62   A0A2H1VJH6   A0A2W1BGI5   A0A2A4JTC4   A0A2A4JV37   A0A2A4JV20   + More
A0A2A4JTW6   A0A0L7L511   A0A194RRA7   A0A194PLE9   A0A212EUE2   A0A1Y1MDL5   E0VC47   A0A067R1P1   V5GBY2   A0A1B6KEX8   A0A2J7QT55   A0A1B6D1A4   A0A2R7WQ87   A0A3Q0JIE1   D6W6A1   A0A023F153   A0A1L7RSY9   A0A2P8Z674   A0A2S2R6V4   A0A158NZV7   A0A195BMV8   F4WID3   A0A026WRL2   J9JWA3   A0A3L8DVD5   A0A195F2M3   A0A154P9L6   A0A2S2P1Z1   A0A151J2H8   A0A195CMQ8   E2ADM3   A0A151XBJ7   U4UNW6   A0A1B6F3P1   A0A087ZX56   A0A146LBQ3   A0A146LTC1   A0A0A9YPM5   T1HAN5   E2B6U9   A0A1B0CSA7   A0A0C9RTH3   A0A336K074   A0A232FHC4   A0A162NUD0   A0A0P5MP10   A0A0P6FNZ8   A0A0N8AB22   A0A0P5T074   A0A0P5M7R7   K7IPC2   A0A1B6HPX7   A0A0P6BQD7   A0A226DAQ7   A0A0P6I3D2   A0A087T8X8  

KEGG

101744813    K20225 capicua transcriptional repressor | (RefSeq) putative transcription factor capicua

GO

GO:0003677   GO:0005634   GO:0000122  

Length:

322

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.09241

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01870

outside

1  -  322

 

 

Pi

292.68451

Theta

163.868785

Tajima's D

2.670388

CLR

0.148858

CSRT

0.960801959902005

Interpretation

Uncertain