Gene

KWMTBOMO04002  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010259

Annotation

PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX43_[Bombyx_mori]

Location

Bomo_Chr7(+):8084051-8086109      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.13 Nuclear   Reliability : 1.77

CDS

ATGACTGATCGCGACGATGATGATTGGATTGAGAATGAAGAGGTAGTCGTACAGACACCGGCATCAAATGTACCTACACACAATACAAGGGTTTACCGACCAACGGCTAGTCGTGGAAATCGCGGCCGTAATACCGATTACAATTGGAGGTCTCGTGGTACAAACGAAGGCCAAAGTGGACGTTTTGACGATAGACGTTCTGGCTCTCGCCAAGAGGGTAGCAAAAAAGTTATTACCATACCTACCGATAAAGTAGGTAGGGTAATAGGTAAAGGTGGTTCAAAAATACGAGATCTGCAAGATGAATCTAAAGCAAAGATAAAGATAGGCGATTCCAGTGGTAATGAAACGGATGTAACCCTCTTCGGCACTGACGAAGCTATCGGTAAAGCTGAAACCATGGTGAATAACTTAATGGAAGACTACAAACCTGCTCCGAGGAAAGAATATGAAGAAGTGGAAACAAGTAACTCACAAGATTTTTTTAAGAAAAATGATGGTGGTGTCCAAGTAATTGACTGGGATAAACTCAATGCCTTTTATGATGAACAACAAAACAACAGATGGGATAAGCTGCCGCCAATTATCAAAGATTTTTACAATGAAGATCCATTGGTTAAGAATATGTCCAAAGCAGAAGTGGCTCATTGGCGTCAAGTCAATAATGACATACAAGTAAAAAGAACATTTGATGAAAAACCAGGCTTAAAACCCATACCAAATCCTGTTCAAACATTTGAACAAGCCTTTCAGCATTATCCAGAAATTTTAGATGAAATTTACAAGCAGGGATTCAAACAGCCATCACCAATACAATGCCAGGCATGGCCAATACTTCTTCGTGGTGATGATATGATAGGTATTGCACAGACAGGGACTGGTAAAACATTGGCTTTCTTATTACCTGCACTAATCCACATAGAAGGACAAACTATACCTCGAGATCAGAGGGAAGGCCCTACAGTACTCATCATGGCACCTACACGGGAGCTGGCACTTCAAATAGACAAAGAGGTAGCAAAGTATCAGTATAAAGGAATTAAATCAGTATGCTTATATGGTGGAGGTGACCGTAAAGAACAGATTAAAGTTGTTGCCAAGGGAGTTGATATAGTGATAGCTACTCCAGGCAGACTCAATGATTTGGTAATGGCCAGGCATTTGAATATCATAAATTTCTCATATATTGTTTTAGACGAGGCAGATAGGATGTTAGACATGGGTTTTGAGCCTCAAATCAGGAAATCACTATTTGATGTAAGACCTGATCGTCAAACAGTAATGACATCCGCAACATGGCCTACTGGAGTACGGCGCCTTGCTGAATCTTACATGAAAGATCCCATCCAAGTTAATGTTGGATCATTGGATTTAGCAGCAGTGCACACTGTCACACAACAAATTATGTTTGTAGAAGAAGATGACAAAGAAGCAGCTCTGTTTGACTTTTTGTATAATATGGAACCTACTGACAAGGTCATCATATTTTGTGGCAAGAAAGCAGTTGCTACCCACATTACTACTGAATTATGCCTTAAAGGTATACAATGCCAATCTTTACATGGCGATAGGGATCAAAGTGATCGTGAGGCAGCTTTGGAAGACATGCTAGATGGGACAGTCAACATTTTGATTGCCACTGATGTTGCATCTCGAGGAATTGATATAAAAGATTTGACACATGTCGTGAATTTTGATTTTCCAAGGCATATTGAAGAATACGTACACAGGGTGGGGAGAACAGGACGTGCAGGAAAAACAGGAATAGCTCTTTCTTTTGTTTCAAGAAACGATTGGGCTCATGCAGCTGAGCTCATAAAGATACTTGAAGAAGCAAATCAAGAAGTTCCTCAAGAGTTAGAGGAAATGGCGCAAAGATTTCAAGCTATGAAGATTAGAAGAGAGCAAGAGCCTGGTAGGGGGGGAGGACGTGGAGGTGGAAGAGGGGGTAGAGGGAGAGGCAGATGGTAA

Protein

MTDRDDDDWIENEEVVVQTPASNVPTHNTRVYRPTASRGNRGRNTDYNWRSRGTNEGQSGRFDDRRSGSRQEGSKKVITIPTDKVGRVIGKGGSKIRDLQDESKAKIKIGDSSGNETDVTLFGTDEAIGKAETMVNNLMEDYKPAPRKEYEEVETSNSQDFFKKNDGGVQVIDWDKLNAFYDEQQNNRWDKLPPIIKDFYNEDPLVKNMSKAEVAHWRQVNNDIQVKRTFDEKPGLKPIPNPVQTFEQAFQHYPEILDEIYKQGFKQPSPIQCQAWPILLRGDDMIGIAQTGTGKTLAFLLPALIHIEGQTIPRDQREGPTVLIMAPTRELALQIDKEVAKYQYKGIKSVCLYGGGDRKEQIKVVAKGVDIVIATPGRLNDLVMARHLNIINFSYIVLDEADRMLDMGFEPQIRKSLFDVRPDRQTVMTSATWPTGVRRLAESYMKDPIQVNVGSLDLAAVHTVTQQIMFVEEDDKEAALFDFLYNMEPTDKVIIFCGKKAVATHITTELCLKGIQCQSLHGDRDQSDREAALEDMLDGTVNILIATDVASRGIDIKDLTHVVNFDFPRHIEEYVHRVGRTGRAGKTGIALSFVSRNDWAHAAELIKILEEANQEVPQELEEMAQRFQAMKIRREQEPGRGGGRGGGRGGRGRGRW

Similarity

Belongs to the DEAD box helicase family.

Uniprot

H9JL58   A0A2W1BYR9   A0A2A4JV11   A0A212EIG6   A0A2H1X0W1   A0A0L7LQ25   + More
A0A194RPJ3   A0A194Q168   E2A0G5   A0A0J7KDA9   A0A0L7QSF0   A0A151IFQ5   A0A1W4WFZ5   A0A067RR85   A0A195FKQ2   A0A151JBL1   A0A310SEX5   A0A154PPA8   A0A232EV41   F4WB06   K7J039   U4UHX0   N6UL26   A0A2A3E7G4   A0A151WN07   A0A1Y1M7X8   A0A2J7PMK7   A0A0M9ACK3   A0A158NRA5   E9IRZ5   A0A195BFE2   A0A087ZUZ1   A0A182FAR6   A0A139WEA2   E2BLC7   A0A2M4AP00   B0WEX6   A0A2M4AJZ0   A0A067ZU11   W5JGZ7   A0A182NCQ0   A0A182P3F4   A0A1Q3EYP6   T1JNX3   A0A182R8G9   U5ESK0   W8B453   A0A026W733   Q16T16   A0A2R5LID1   A0A1S4FQG3   A0A182JN43   A0A087U8V7   A0A336M3K0   A0A084WQ82   A0A1B6BXS7   A0A182MJI6   A0A182VAI7   A0A1S3K8C6   A0A023EVY9   A0A182TXX3   A0A1C7CZY3   A0A0P5US11   A7UT24   A0A182XF23   A0A0P6HUL9   A0A182YJP6   A0A0P5LFI3   A0A0P5TCY5   A0A0P5XVB0   A0A0P5FWQ4   A0A0P5NJ71   A0A0P6DX92   A0A0N8BTU9   A0A0N8E4X1   A0A0P5FYT7   A0A1B6IWX4   A0A182K4E1   A0A0P6CSN0   A0A0P5QJR2   A0A182W338   A0A1A9Z750   A0A0K8TLU5   A0A0N8BCK9   A0A0P5HKY3   A0A2M4BKM6   A0A0N8B4G5   A0A0P5NGN0   A0A0P5NRN7   A0A0P5NRP5   A0A182SDA7   A0A0P5K8L1   D3TME6   A0A1B0G2I2   A0A1B0ASM9   A0A1A9X5Z0   A0A1B0DN70   A0A1B6GVC3   A0A2L2Y758  

Pubmed

19121390    28756777    22118469    26227816    26354079    20798317    + More
24845553    28648823    21719571    20075255    23537049    28004739    21347285    21282665    18362917    19820115    20920257    23761445    24495485    24508170    17510324    24438588    24945155    20966253    12364791    14747013    17210077    25244985    26369729    20353571    26561354   

EMBL

BABH01011634    KZ149940    PZC76923.1    NWSH01000620    PCG75250.1    AGBW02014660    + More
OWR41260.1    ODYU01012550    SOQ58941.1    JTDY01000368    KOB77504.1    KQ460075    KPJ17941.1    KQ459582    KPI98734.1    GL435586    EFN73102.1    LBMM01009344    KMQ88194.1    KQ414766    KOC61391.1    KQ977771    KYM99994.1    KK852513    KDR22264.1    KQ981522    KYN40574.1    KQ979122    KYN22513.1    KQ762207    OAD56038.1    KQ435007    KZC13703.1    NNAY01002054    OXU22224.1    GL888056    EGI68626.1    KB632331    ERL92627.1    APGK01019271    APGK01019272    KB740098    ENN81391.1    KZ288345    PBC27640.1    KQ982922    KYQ49254.1    GEZM01042243    JAV80026.1    NEVH01023984    PNF17557.1    KQ435701    KOX80379.1    ADTU01023838    GL765283    EFZ16586.1    KQ976504    KYM82907.1    KQ971354    KYB26280.1    GL449017    EFN83479.1    GGFK01009188    MBW42509.1    DS231912    EDS25834.1    GGFK01007784    MBW41105.1    KF192311    AHY18681.1    ADMH02001552    ETN62089.1    GFDL01014621    JAV20424.1    JH431734    GANO01003214    JAB56657.1    GAMC01010625    JAB95930.1    KK107390    EZA51431.1    CH477661    EAT37615.1    GGLE01005072    MBY09198.1    KK118759    KFM73796.1    UFQT01000128    SSX20568.1    ATLV01025286    KE525379    KFB52376.1    GEDC01031478    GEDC01031476    JAS05820.1    JAS05822.1    AXCM01000114    GAPW01000306    JAC13292.1    GDIP01126381    LRGB01002227    JAL77333.1    KZS08342.1    AAAB01008898    EDO64138.2    GDIQ01014702    JAN80035.1    GDIQ01170359    JAK81366.1    GDIQ01093429    JAL58297.1    GDIP01066781    JAM36934.1    GDIQ01249335    JAK02390.1    GDIQ01207186    GDIQ01173496    GDIQ01171907    GDIQ01145468    GDIQ01097226    GDIQ01034709    JAL06258.1    GDIQ01072745    GDIQ01072744    JAN21992.1    GDIQ01208432    GDIQ01207187    GDIQ01145467    GDIQ01046455    JAL06259.1    GDIQ01061500    JAN33237.1    GDIQ01249336    JAK02389.1    GECU01016281    JAS91425.1    GDIQ01087890    JAN06847.1    GDIQ01134124    JAL17602.1    GDAI01002693    JAI14910.1    GDIQ01190987    JAK60738.1    GDIQ01228028    JAK23697.1    GGFJ01004464    MBW53605.1    GDIQ01213739    JAK37986.1    GDIQ01153105    JAK98620.1    GDIQ01138725    JAL13001.1    GDIQ01138726    JAL13000.1    GDIQ01213740    JAK37985.1    EZ422598    ADD18874.1    CCAG010018315    JXJN01002887    JXJN01002888    AJVK01017336    AJVK01017337    GECZ01003424    JAS66345.1    IAAA01013545    LAA03981.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000037510    UP000053240    UP000053268    + More
UP000000311    UP000036403    UP000053825    UP000078542    UP000192223    UP000027135    UP000078541    UP000078492    UP000076502    UP000215335    UP000007755    UP000002358    UP000030742    UP000019118    UP000242457    UP000075809    UP000235965    UP000053105    UP000005205    UP000078540    UP000005203    UP000069272    UP000007266    UP000008237    UP000002320    UP000000673    UP000075884    UP000075885    UP000075900    UP000053097    UP000008820    UP000075880    UP000054359    UP000030765    UP000075883    UP000075903    UP000085678    UP000075902    UP000075882    UP000076858    UP000007062    UP000076407    UP000076408    UP000075881    UP000075920    UP000092445    UP000075901    UP000092444    UP000092460    UP000092443    UP000092462   

PRIDE

H9JL58   

Pfam

PF00013   KH_1        + More
PF00271   Helicase_C
PF00270   DEAD
PF01663   Phosphodiest
PF02170   PAZ
PF00636   Ribonuclease_3

Interpro

IPR001650   Helicase_C        + More
IPR036612   KH_dom_type_1_sf       
IPR014001   Helicase_ATP-bd       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR004088   KH_dom_type_1       
IPR027417   P-loop_NTPase       
IPR004087   KH_dom       
IPR002591   Phosphodiest/P_Trfase       
IPR017850   Alkaline_phosphatase_core_sf       
IPR006116   2-5-oligoadenylate_synth_N       
IPR036389   RNase_III_sf       
IPR014720   dsRBD_dom       
IPR000999   RNase_III_dom       
IPR036085   PAZ_dom_sf       
IPR003100   PAZ_dom       

SUPFAM

SSF54791   SSF54791        + More
SSF52540   SSF52540       
SSF53649   SSF53649       
SSF101690   SSF101690       
SSF69065   SSF69065       

Gene 3D

3.30.1370.10     3.40.720.10     1.10.1520.10    

CDD

cd00079  HELICc
cd00048  DSRM
cd00593  RIBOc

ProteinModelPortal

H9JL58   A0A2W1BYR9   A0A2A4JV11   A0A212EIG6   A0A2H1X0W1   A0A0L7LQ25   + More
A0A194RPJ3   A0A194Q168   E2A0G5   A0A0J7KDA9   A0A0L7QSF0   A0A151IFQ5   A0A1W4WFZ5   A0A067RR85   A0A195FKQ2   A0A151JBL1   A0A310SEX5   A0A154PPA8   A0A232EV41   F4WB06   K7J039   U4UHX0   N6UL26   A0A2A3E7G4   A0A151WN07   A0A1Y1M7X8   A0A2J7PMK7   A0A0M9ACK3   A0A158NRA5   E9IRZ5   A0A195BFE2   A0A087ZUZ1   A0A182FAR6   A0A139WEA2   E2BLC7   A0A2M4AP00   B0WEX6   A0A2M4AJZ0   A0A067ZU11   W5JGZ7   A0A182NCQ0   A0A182P3F4   A0A1Q3EYP6   T1JNX3   A0A182R8G9   U5ESK0   W8B453   A0A026W733   Q16T16   A0A2R5LID1   A0A1S4FQG3   A0A182JN43   A0A087U8V7   A0A336M3K0   A0A084WQ82   A0A1B6BXS7   A0A182MJI6   A0A182VAI7   A0A1S3K8C6   A0A023EVY9   A0A182TXX3   A0A1C7CZY3   A0A0P5US11   A7UT24   A0A182XF23   A0A0P6HUL9   A0A182YJP6   A0A0P5LFI3   A0A0P5TCY5   A0A0P5XVB0   A0A0P5FWQ4   A0A0P5NJ71   A0A0P6DX92   A0A0N8BTU9   A0A0N8E4X1   A0A0P5FYT7   A0A1B6IWX4   A0A182K4E1   A0A0P6CSN0   A0A0P5QJR2   A0A182W338   A0A1A9Z750   A0A0K8TLU5   A0A0N8BCK9   A0A0P5HKY3   A0A2M4BKM6   A0A0N8B4G5   A0A0P5NGN0   A0A0P5NRN7   A0A0P5NRP5   A0A182SDA7   A0A0P5K8L1   D3TME6   A0A1B0G2I2   A0A1B0ASM9   A0A1A9X5Z0   A0A1B0DN70   A0A1B6GVC3   A0A2L2Y758  

PDB

3IUY     E-value=1.73543e-76,     Score=730

KEGG

101735665    K17043 ATP-dependent RNA helicase DDX43 [EC:3.6.4.13] | (RefSeq) probable ATP-dependent RNA helicase

GO

GO:0003723   GO:0005524   GO:0004386   GO:0003676   GO:0016021   GO:0003824   GO:0006955   GO:0016740   GO:0031047   GO:0004525   GO:0006396   GO:0008270   GO:0008892   GO:0006811   GO:0006032   GO:0004672   GO:0048384  

Length:

656

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01446

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00171

outside

1  -  656

 

 

Pi

165.563714

Theta

144.057666

Tajima's D

-0.258912

CLR

311.851003

CSRT

0.295335233238338

Interpretation

Uncertain