Gene

KWMTBOMO04001

Pre Gene Modal

BGIBMGA010121

Annotation

PREDICTED:_rho_GTPase-activating_protein_20_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr7(-):8048043-8082280      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.459 Nuclear   Reliability : 1.181

CDS

ATGAGCAACTGGGCAAGGAGAATGCATCGCCGAGCAGCTACATTGAGTAATGTAGTCACGTCTTGTGGCCACCCGAATTCACTGCCCTATCCAAGAAGACTAGAAAAAGTCAAATTCGGCGTTCCACTTCTCGAAGTCTGCAAGGATGACATCCCGGGTCCCTTGCTCGTTCTGATATTGAAATTGAACAAGGAGGCACCGCTGCGCCGCGATGTGTTCCGCGCGCCGGGTCATCAGGGAGCCATGAAAAAATTAATTCATTTTCTTCAAACTGGCCGACTAGTCAATGTGGACAATTATTCTGTATATACCATTGCCAGTGTCTTGAAAAAGTTTCTCAGGAAGATACCAGGAGGCGTTTTCAGCCGCGATGGTGAAATGCAGCTCTTTGCAGCAGTTGAGCTGCCGGAGGAAAGGCAGGTCGATGAAATTCGCAGATTGCTAATGTCACTGCCCGTTTGCACGCAGCGATTATTGGTACTGTTGTTTGGTACGTTCCGGGTGATGGCTTCCAACGCTGACAAAGCGGGTACAGGCATGACATCGGAAGCTCTAGGCGTGTCGGTGGCGCCTTCGTTTTTCCACTCTTGCGTGTCGGACGGTAAAACGGCCACAATGGAGGATGTGCAGCGTTTCAAGGTGGCGACCCGTATAATGCGTCAGCTGATCGAGCAGTTCAGCGCCGGCGATCTGTTCGGGAGGGAGAATTACGAGTACTACGCTCGTGTGACGGGCCGCATTCTCCGCGTCAAGGACGAATGGATATGCTCGTTCAGGGATCCTCCGCCGCCGAGACATCGGAGAGACCAAGAGGCTTATGCTAGACAATTATCGCTTGAAGCAGAAAAGACATGGCTTCAATGCGAGTGCGACCGTTGGGGGAACAAGTTCAATCTCGAAGGTTTAACGAAATCCGAAGAGTGTCAGTCGATGCCCGCGCTGATGGGCGCTGTGGGCGGCGCCAACGCCGGCTCCGTGCTCGGCATCATACCGGAGCACAGCTTGCTCGACTCGTGCACCAGGCTGTCGATATCGCTCGAGGAAAGCATTTTTAAGATATCAGTCAGTTCGTCATCGCAATCGTCATGCAGTAACTCCAGTCCTCACATGACTCTGGAGGAGCTTCGGGCCATCAACAAGTACGCGGAGAGCACAAAGAGCCTCTCATATCTCCCTCAGTTGCAGGCGGCGAACGTCGCAGTACGCGGCGTCGGTCGCGGCGGTCGCGCGTGTGCTCGTGCCGCACGCTCGCGCACTCTGACACTGAGATCCCGCTCCCTCTCCAGCCTCGTAAAGTGA

Protein

MSNWARRMHRRAATLSNVVTSCGHPNSLPYPRRLEKVKFGVPLLEVCKDDIPGPLLVLILKLNKEAPLRRDVFRAPGHQGAMKKLIHFLQTGRLVNVDNYSVYTIASVLKKFLRKIPGGVFSRDGEMQLFAAVELPEERQVDEIRRLLMSLPVCTQRLLVLLFGTFRVMASNADKAGTGMTSEALGVSVAPSFFHSCVSDGKTATMEDVQRFKVATRIMRQLIEQFSAGDLFGRENYEYYARVTGRILRVKDEWICSFRDPPPPRHRRDQEAYARQLSLEAEKTWLQCECDRWGNKFNLEGLTKSEECQSMPALMGAVGGANAGSVLGIIPEHSLLDSCTRLSISLEESIFKISVSSSSQSSCSNSSPHMTLEELRAINKYAESTKSLSYLPQLQAANVAVRGVGRGGRACARAARSRTLTLRSRSLSSLVK

Cofactor

Fe cation

Similarity

Belongs to the fatty acid desaturase type 1 family.

Uniprot

A0A3S2NVJ0   A0A2W1BTF5   A0A194Q0A7   A0A212EIG3   H9JKS0   A0A1L8DNA1   + More
A0A1S4G7V7   A0A084WMA9   A0A2P8XTY5   A0A0K8TNU7   A0A232ERZ1   A0A2J7Q547   K7IYW7   A0A2J7Q535   A0A067RG35   A0A2M4CZR4   A0A2M4ALL0   A0A0C9PQL5   E1ZUZ1   A0A1B6JEM9   A0A2M3ZCL1   A0A1B6GX54   A0A1B6JNS0   A0A1B6D582   A0A1B6LMA5   A0A151XHV5   A0A3L8DIX5   F4WHQ0   A0A151JUU3   A0A195B543   A0A158NM36   A0A151IBR7   E2C2U9   A0A151J0X8   U5EP11   T1HZ92   A0A0J7KD92   D2A378   A0A1B6BXZ7   A0A336MPF5   A0A0Q9XPX9   A0A1I8MGQ7   A0A0Q9WJP1   A0A0Q9WKC8   A0A0A9X8F7   A0A1I8Q2A5   A0A1B6IZ14   A0A1B6JSE3   B4N4W0   A0A0M4EFJ4   A0A1B0FLQ5   A0A0P9AKM9   A0A0R1E388   A0A0P8XUR9   B4PCI2   A0A0Q5UH14   A0A0R3P798   A0A146L3B2   A0A0A9X3B0   B3NI47   A0A0J9RW37   A0A0J9ULM8   M9MRW2   Q8IQM3   A0A1W4VAM2   B4HIH1   B4QL43   A0A1W4VNQ2   Q9VUR5   A0A2R7VTN4   N6UK12   A0A1I8MGQ3   A0A1Y1MS98   A0A0K8WIY9   A0A0A1XHG4   A0A034VSB3   A0A0A1WX73   A0A0L0C8F0   A0A0K8V8Q4   B4L0I6   B4LII8   A0A1I8Q2A1   A0A1B6CK66   A0A1I8Q292   A0A1I8MGQ5   B4J032   B3MAC7   A0A0R1E1P0   A0A0R1E3E0   A0A0P9C3Z3   A0A0J9RVP7   Q9VUR6   A0A0Q5U586   Q2M1D6   B7Z058   A0A0Q5UJD2   A0A1W4VN15   A0A1W4VMB5   U4UHW5   A0A026W615  

Pubmed

28756777    26354079    22118469    19121390    24438588    29403074    + More
26369729    28648823    20075255    24845553    20798317    30249741    21719571    21347285    18362917    19820115    17994087    25315136    25401762    26823975    17550304    15632085    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    23537049    28004739    25830018    25348373    26108605    18057021    23185243    24508170   

EMBL

RSAL01000155    RVE45655.1    KZ149940    PZC76924.1    KQ459582    KPI98733.1    + More
AGBW02014660    OWR41261.1    BABH01011632    BABH01011633    BABH01011634    GFDF01006239    JAV07845.1    ATLV01024395    KE525351    KFB51353.1    PYGN01001356    PSN35460.1    GDAI01002023    JAI15580.1    NNAY01002541    OXU21102.1    NEVH01018372    PNF23700.1    PNF23699.1    KK852497    KDR22717.1    GGFL01006543    MBW70721.1    GGFK01008301    MBW41622.1    GBYB01003518    JAG73285.1    GL434335    EFN74989.1    GECU01009955    JAS97751.1    GGFM01005491    MBW26242.1    GECZ01002763    JAS67006.1    GECU01006877    JAT00830.1    GEDC01016437    JAS20861.1    GEBQ01015353    JAT24624.1    KQ982109    KYQ59986.1    QOIP01000007    RLU20384.1    GL888167    EGI66257.1    KQ981730    KYN36608.1    KQ976604    KYM79387.1    ADTU01020219    KQ978079    KYM97167.1    GL452203    EFN77784.1    KQ980586    KYN15245.1    GANO01004871    JAB55000.1    ACPB03024846    LBMM01009408    KMQ88159.1    KQ971338    EFA01951.2    GEDC01031463    JAS05835.1    UFQS01001969    UFQT01001969    SSX12794.1    SSX32236.1    CH933809    KRG06519.1    CH940647    KRF85100.1    KRF85098.1    GBHO01030230    GBHO01030224    GBHO01029128    GBHO01029126    GBHO01029124    GBHO01027815    GBHO01027806    GBHO01027805    GBHO01023999    GDHC01001734    JAG13374.1    JAG13380.1    JAG14476.1    JAG14478.1    JAG14480.1    JAG15789.1    JAG15798.1    JAG15799.1    JAG19605.1    JAQ16895.1    GECU01015543    JAS92163.1    GECU01005607    JAT02100.1    CH964101    EDW79399.1    CP012525    ALC44734.1    CCAG010023511    CH902618    KPU78421.1    CM000159    KRK02098.1    KPU78423.1    EDW94892.2    CH954178    KQS44115.1    CH379069    KRT07493.1    GDHC01015676    JAQ02953.1    GBHO01038426    GBHO01038422    GBHO01038415    GBHO01030225    GBHO01029125    GBHO01029121    GBHO01029120    GBHO01027813    GBHO01024000    JAG05178.1    JAG05182.1    JAG05189.1    JAG13379.1    JAG14479.1    JAG14483.1    JAG14484.1    JAG15791.1    JAG19604.1    EDV52133.1    CM002912    KMY99787.1    KMY99785.1    AE014296    ADV37548.1    AAN11778.1    CH480815    EDW41601.1    CM000363    EDX10568.1    AY061070    AAF49610.2    AAL28618.1    KK854082    PTY10883.1    APGK01030244    APGK01030245    APGK01030246    KB740764    ENN79022.1    GEZM01024130    GEZM01024129    JAV87948.1    GDHF01001257    JAI51057.1    GBXI01004339    JAD09953.1    GAKP01013598    JAC45354.1    GBXI01011274    JAD03018.1    JRES01000760    KNC28520.1    GDHF01017088    JAI35226.1    EDW19155.1    KRG06517.1    KRG06518.1    EDW70775.1    GEDC01023451    JAS13847.1    CH916366    EDV97825.1    EDV40178.2    KRK02099.1    KRK02100.1    KPU78424.1    KPU78425.1    KMY99788.1    AAF49609.2    KQS44117.1    EAL30638.2    KRT07491.1    KRT07494.1    ACL83311.1    KQS44118.1    KB632308    ERL91933.1    KK107390    EZA51448.1   

Proteomes

UP000283053    UP000053268    UP000007151    UP000005204    UP000030765    UP000245037    + More
UP000215335    UP000235965    UP000002358    UP000027135    UP000000311    UP000075809    UP000279307    UP000007755    UP000078541    UP000078540    UP000005205    UP000078542    UP000008237    UP000078492    UP000015103    UP000036403    UP000007266    UP000009192    UP000095301    UP000008792    UP000095300    UP000007798    UP000092553    UP000092444    UP000007801    UP000002282    UP000008711    UP000001819    UP000000803    UP000192221    UP000001292    UP000000304    UP000019118    UP000037069    UP000001070    UP000030742    UP000053097   

PRIDE

H9JKS0    M9MRW2    Q8IQM3    Q9VUR5    Q9VUR6    B7Z058    + More

Pfam

PF00620   RhoGAP        + More
PF00487   FA_desaturase

Interpro

IPR008936   Rho_GTPase_activation_prot        + More
IPR000198   RhoGAP_dom       
IPR005804   FA_desaturase_dom       
IPR015876   Acyl-CoA_DS       

SUPFAM

SSF48350   SSF48350       

Gene 3D

1.10.555.10    

CDD

cd03505  Delta9-FADS-like

ProteinModelPortal

A0A3S2NVJ0   A0A2W1BTF5   A0A194Q0A7   A0A212EIG3   H9JKS0   A0A1L8DNA1   + More
A0A1S4G7V7   A0A084WMA9   A0A2P8XTY5   A0A0K8TNU7   A0A232ERZ1   A0A2J7Q547   K7IYW7   A0A2J7Q535   A0A067RG35   A0A2M4CZR4   A0A2M4ALL0   A0A0C9PQL5   E1ZUZ1   A0A1B6JEM9   A0A2M3ZCL1   A0A1B6GX54   A0A1B6JNS0   A0A1B6D582   A0A1B6LMA5   A0A151XHV5   A0A3L8DIX5   F4WHQ0   A0A151JUU3   A0A195B543   A0A158NM36   A0A151IBR7   E2C2U9   A0A151J0X8   U5EP11   T1HZ92   A0A0J7KD92   D2A378   A0A1B6BXZ7   A0A336MPF5   A0A0Q9XPX9   A0A1I8MGQ7   A0A0Q9WJP1   A0A0Q9WKC8   A0A0A9X8F7   A0A1I8Q2A5   A0A1B6IZ14   A0A1B6JSE3   B4N4W0   A0A0M4EFJ4   A0A1B0FLQ5   A0A0P9AKM9   A0A0R1E388   A0A0P8XUR9   B4PCI2   A0A0Q5UH14   A0A0R3P798   A0A146L3B2   A0A0A9X3B0   B3NI47   A0A0J9RW37   A0A0J9ULM8   M9MRW2   Q8IQM3   A0A1W4VAM2   B4HIH1   B4QL43   A0A1W4VNQ2   Q9VUR5   A0A2R7VTN4   N6UK12   A0A1I8MGQ3   A0A1Y1MS98   A0A0K8WIY9   A0A0A1XHG4   A0A034VSB3   A0A0A1WX73   A0A0L0C8F0   A0A0K8V8Q4   B4L0I6   B4LII8   A0A1I8Q2A1   A0A1B6CK66   A0A1I8Q292   A0A1I8MGQ5   B4J032   B3MAC7   A0A0R1E1P0   A0A0R1E3E0   A0A0P9C3Z3   A0A0J9RVP7   Q9VUR6   A0A0Q5U586   Q2M1D6   B7Z058   A0A0Q5UJD2   A0A1W4VN15   A0A1W4VMB5   U4UHW5   A0A026W615  

PDB

3MSX     E-value=2.30324e-18,     Score=227

KEGG

101744525    K20641 Rho GTPase-activating protein 20 | (RefSeq) rho GTPase-activating protein 20

GO

GO:0007165   GO:0006633   GO:0016717   GO:0016021   GO:0005096   GO:0003384   GO:0007480   GO:0045177   GO:0007266   GO:0016810   GO:0006147   GO:0008270   GO:0008892   GO:0006811   GO:0006032   GO:0004672   GO:0048384  

Length:

432

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.2495

Exp number, first 60 AAs:

0.0328

Total prob of N-in:

0.09482

outside

1  -  432

 

 

Pi

248.569256

Theta

178.576656

Tajima's D

0.899126

CLR

0.450834

CSRT

0.635168241587921

Interpretation

Uncertain