Gene

KWMTBOMO03995

Pre Gene Modal

BGIBMGA010124

Annotation

PREDICTED:_semaphorin-5A_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr7(-):7903787-7948375      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 3.491

CDS

ATGGGACCCCTTATATACAAGGTAACGGCTCTGGTACTCCTCGGATCGGTGTGTAAAGGAGATTTGCCAGAAGATGACTTCAGGATAATCAATAGACAAGATTTGCTGGCGTTCGATTCCGATATATTCGAAGATAACAACACTAAATCATTTTCGCAACTGCTTTTCGATGTTGCAAGGGACCAGCTGATCGTGGGCGCAAGGGATGCCCTCTATCGATTATCGTTACGAGGTTTACGTGAACTGGAGCGTGCTGATTGGCCAGCTCCTGTCGAGAAGACGAGGCTCTGTCAAATGAAGGGTCAAACGGAAGATGATTGCCACAATTACATTAAAGTTCTGCTGTCGTACGGACACAAGTTGTTTGCGTGTGGGACAAATGCGTTCAGCCCTAGCTGCAGTTGGCGTGAGATTGAGTCTTTGAATACGATATCGGAGCAAACGTCAGGGGTGGCCCATTGCCCTTATAATCCTCATTCAAATGTGACCGCAATACTTGCTGCAAACGGAGAATATTATGCCGGCACACCAACTGACTTCAGCAGTTCCGATCCGGCTATTTGCAGGAGTCGCGGTGCCTCTCCTACGAATTCGGTGACACTTCGCACGACGCAGTATGATTACAACTGGCTGAACGAACCCCAGTTCGTCGGGAGCTTCGAAGACGATAATTTCGTGTACTTTGTATACAGGGAGGTGGCCGTTGAATATATGAATTGTGGGAAGATTATATACTCCCGTATTGCTCGCATCTGCAAGAACGATGCCGGCGGCTTTCTGATGATGAAAGACAAATGGAGTACATTTCTGAGGGCTCGTCTGAAGTGTCCGGTGTCCGGTGAAGTGCCCTTCTACTACGATGAAGTTCAGAGCGTTGAATACCTGGCCCAGGAAAAGATCCTTGTGGCAACTTTCACTACTCCTAGCAACAGCATAATAGGTAGCGCCGTCTGTGTGTACAACATGTCTGACGTTCACGCAGCTTTCGACGGTCCTTACAAAGTGCAGGCCACATCGACTTCGCTTTGGGAGCAACGGTCACCGTCGAAGCAGGCGAAGGACCACTTCAAGTGTGTGCCCGATTCTAGTGCTCGCCAAGCAATAGAATACCATCGTTACAATTTAATGTACGAATCAGTACTGCCTGTATCCGGCGAGCCCATCTACAGAATGACTTCGGAACGATTCACTCACGTCACAGTCGACGTGACAGCCGCCAAACACATTGAACGGCAATTAGTAGTTTTTGTGGCAACACTGAGCGGTTTCGTGCTGAAGTTGGCGGTGTTGCCGAGGTTGGATGGCTCGTGTTTGGTAGAAAAATGGAATTTGAAGGACGAAAAAGGAGGTTTTGATGTTAAAACTATGCAGTTCGTTAAGGACACGATGTCAGTATACATCGGAAGCGACACGGGCGTTGTGCGTATCAGCAGCGAGCGTTGTTCCCGGTACAAGAGTCGATCCGGCTGTATATCCGCAACTGACCCGCATTGCGGCTGGGACGACGCCAGGGAGCGTTGCGTACGGGCCGTTGACCATTTACACGACCATAGCTTCGTGCAATCCACCGCTACTTGTCCCACGTCTAATTCACCAGTGGACGGTGGCTGGTCGTCGTGGTCCGAATGGGAACAGTGCATGCAAGACGGAACCACGCACGCGCTGTACGAGGATGAGAAGCCGGATATGTGCATGTGCAGGACGCGACGGTGCAACAACCCGAAGCCAGCACACGGCGGCCAGGGTTGTAAAGGAGCCAGCATATCAGTGACGAACTGCACGGTGCACGGCGGCTGGTCGGGCTGGTCCTCGTGGTCCGAGTGCTCGGCGTCGTGCGGCATCGCGGTCAAGTCACGGCGACGCACGTGCTCGTCTCCGGAGCCCAAGTTCGGAGGCCGCGTGTGCGTCGGATTGGATGTCGATGATATATTCTGTTCGAATCTGCCTCCTTGTCCAGATCCAAATCTAGTACCGGTCGATGGTGGCTGGTCAGCTTGGAGCCAATGGTCGCAGTGTACCAGTGCTGGGGGTCCCGGCTGCGGTCCGGCGGCCGGTTGGAGAGAACGGAAGCGAACGTGCACCAACCCCGCGCCTAAGCATGGCGGCATCGACTGTGAAGGTTTCAAGGTTGAGAAGCAAGTCTGCGATATGAAACCATGCGAGGTCAGGAAGGCCACAGCTTGGACCCCTTGGGTGCAGATACCCGGTAATTTATCAGACGGCAGTTATACAGAGAAACGATTCAAATTTTTGTGTAAGGCGCCGTCACCAGACCAAATAAAACTGTCGATAGCTCGTGAAGAAGAAAGGTATTGCAATGCTCGCGGTATATGCAGTAACAATCCTCCAGAAGAAGAATCAGGGTGGGAAGAGTGGGGGCCCTGGGAAGCTTGTTCGGCGAACTGTGGTGGTGGACAACAGGCCCGGACTAGGAAATGTCGACGGCCACCCTGCGTCGGTTCTGCTGAAATGTTAAGGGCTTGCAATACTCATGCTTGCTCAGGCGCCACCCACCTCGAGATATAA

Protein

MGPLIYKVTALVLLGSVCKGDLPEDDFRIINRQDLLAFDSDIFEDNNTKSFSQLLFDVARDQLIVGARDALYRLSLRGLRELERADWPAPVEKTRLCQMKGQTEDDCHNYIKVLLSYGHKLFACGTNAFSPSCSWREIESLNTISEQTSGVAHCPYNPHSNVTAILAANGEYYAGTPTDFSSSDPAICRSRGASPTNSVTLRTTQYDYNWLNEPQFVGSFEDDNFVYFVYREVAVEYMNCGKIIYSRIARICKNDAGGFLMMKDKWSTFLRARLKCPVSGEVPFYYDEVQSVEYLAQEKILVATFTTPSNSIIGSAVCVYNMSDVHAAFDGPYKVQATSTSLWEQRSPSKQAKDHFKCVPDSSARQAIEYHRYNLMYESVLPVSGEPIYRMTSERFTHVTVDVTAAKHIERQLVVFVATLSGFVLKLAVLPRLDGSCLVEKWNLKDEKGGFDVKTMQFVKDTMSVYIGSDTGVVRISSERCSRYKSRSGCISATDPHCGWDDARERCVRAVDHLHDHSFVQSTATCPTSNSPVDGGWSSWSEWEQCMQDGTTHALYEDEKPDMCMCRTRRCNNPKPAHGGQGCKGASISVTNCTVHGGWSGWSSWSECSASCGIAVKSRRRTCSSPEPKFGGRVCVGLDVDDIFCSNLPPCPDPNLVPVDGGWSAWSQWSQCTSAGGPGCGPAAGWRERKRTCTNPAPKHGGIDCEGFKVEKQVCDMKPCEVRKATAWTPWVQIPGNLSDGSYTEKRFKFLCKAPSPDQIKLSIAREEERYCNARGICSNNPPEEESGWEEWGPWEACSANCGGGQQARTRKCRRPPCVGSAEMLRACNTHACSGATHLEI

Uniprot

H9JKS3   A0A2A4JXU7   A0A2W1BPF3   A0A3S2NQ82   A0A194RJE1   A0A2H1VVR5   + More
A0A194PZH7   A0A1L8DMH5   A0A1B6CGE7   A0A1B6DGV9   A0A2J7RLU3   A0A224XIE5   A0A1Q3FMD8   A0A1Q3FM20   A0A1Q3FM48   A0A1Q3FLU1   A0A067RM86   A0A088AFH5   A0A3L8DQJ7   A0A195EEJ4   A0A0C9RD74   A0A0C9QVG8   A0A151IFA6   A0A2M4D055   A0A2M4CZW7   A0A2M4DPB3   A0A0A9XBJ1   A0A151WUE7   A0A0K8SS39   A0A1B0D890   A0A0N0BJV7   A0A182UV17   A0A0P6J4Q4   E0VPJ5   A0A2H8TE71   T1IJU2   Q7QC32   J9K1H2   A0A310S489   A0A1W4XAR5   A0A0A1WZI9   A0A0A1WRU8   A0A195B4Z3   A0A182F704   A0A154PGZ2   W8AR08   F4W964   W5JWC2   A0A0L7QKV9   A0A182R9W3   B4L159   A0A0Q9XE35   D7EII6   B4PG84   Q9VTT0   A0A195F3E0   B4QQS6   Q7YU67   A0A1Y1K1S8   A0A2A3ECC7   A0A2P6LE75   A0A182XI64   B3NH55   A0A0K8U7C0   A0A0T6BC38   A0A182VX90   Q9U631   A0A182XX14   A0A034V9S3   A0A182MCW0   A0A0K8UJK8   A0A0L0CEV5   A0A034VAD4   A0A182NFF6   A0A1I8P2V2   A0A182LF87   A0A182TLH4   A0A1W4W6E2   A0A0P9AKP8   B3MAF5   A0A182Q8K5   A0A182P724   A0A158P0G6   N6U0L0   A0A3Q0ISN4   A0A182HT48   B4HFI0   B4IXY5   A0A0M5JBB1   A0A0P6ITU6   A0A3B0J649   A0A3B0JV33   A0A1I8N4G2   A0A3B0J5U5   A0A0P6C8U1   B4LC25   A0A0Q9WWC1   A0A0P5LZ35   A0A0P4XZM4   A0A0R3P400  

Pubmed

19121390    28756777    26354079    24845553    30249741    25401762    + More
26823975    26999592    20566863    12364791    25830018    24495485    21719571    20920257    23761445    17994087    18362917    19820115    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    26109357    26109356    28004739    10704872    25244985    25348373    26108605    20966253    21347285    23537049    25315136    15632085    23185243   

EMBL

BABH01011623    NWSH01000377    PCG76845.1    KZ149940    PZC76932.1    RSAL01000155    + More
RVE45650.1    KQ460075    KPJ17948.1    ODYU01004694    SOQ44846.1    KQ459582    KPI98726.1    GFDF01006426    JAV07658.1    GEDC01024893    JAS12405.1    GEDC01012369    GEDC01000635    JAS24929.1    JAS36663.1    NEVH01002683    PNF41802.1    GFTR01008074    JAW08352.1    GFDL01006265    JAV28780.1    GFDL01006386    JAV28659.1    GFDL01006430    JAV28615.1    GFDL01006466    JAV28579.1    KK852543    KDR21695.1    QOIP01000005    RLU22473.1    KQ979039    KYN23269.1    GBYB01004881    JAG74648.1    GBYB01007714    GBYB01013784    JAG77481.1    JAG83551.1    KQ977800    KYM99564.1    GGFL01006683    MBW70861.1    GGFL01006682    MBW70860.1    GGFL01015235    MBW79413.1    GBHO01025529    GBHO01025527    GBRD01010183    GDHC01009373    JAG18075.1    JAG18077.1    JAG55641.1    JAQ09256.1    KQ982736    KYQ51466.1    GBRD01010184    JAG55640.1    AJVK01027315    AJVK01027316    AJVK01027317    AJVK01027318    KQ435710    KOX79712.1    GDUN01000847    JAN95072.1    DS235366    EEB15301.1    GFXV01000591    MBW12396.1    AFFK01014860    AAAB01008859    EAA07529.5    ABLF02027390    KQ780658    OAD51942.1    GBXI01009803    GBXI01003947    JAD04489.1    JAD10345.1    GBXI01014462    GBXI01013129    JAC99829.1    JAD01163.1    KQ976598    KYM79566.1    KQ434902    KZC11082.1    GAMC01019605    GAMC01019604    GAMC01019603    GAMC01019602    GAMC01019601    GAMC01019600    JAB86953.1    GL888002    EGI69246.1    ADMH02000177    ETN67490.1    KQ414940    KOC59161.1    CH933809    EDW19241.2    KRG06565.1    KQ971307    EFA12053.2    CM000159    EDW94248.2    AE014296    AAF49966.3    KQ981855    KYN34901.1    CM000363    CM002912    EDX10178.1    KMY99155.1    BT009966    AAQ22435.1    ACZ94701.1    GEZM01098950    JAV53615.1    KZ288287    PBC29378.1    MWRG01000185    PRD36860.1    CH954178    EDV51512.1    GDHF01029757    JAI22557.1    LJIG01002177    KRT84763.1    AF198084    AAF04860.1    GAKP01020427    GAKP01020426    JAC38525.1    AXCM01007210    GDHF01025440    JAI26874.1    JRES01000496    KNC30781.1    GAKP01020425    GAKP01020424    JAC38528.1    CH902618    KPU78439.1    EDV40206.2    AXCN02000214    ADTU01000987    ADTU01000988    ADTU01000989    ADTU01000990    APGK01047102    APGK01047103    KB741077    ENN74131.1    APCN01000411    CH480815    EDW41211.1    CH916366    EDV97528.1    CP012525    ALC44181.1    GDIQ01005169    JAN89568.1    OUUW01000002    SPP77225.1    SPP77226.1    SPP77227.1    GDIP01019163    JAM84552.1    CH940647    EDW70853.1    KRF85147.1    GDIQ01172144    JAK79581.1    GDIP01234659    JAI88742.1    CH379069    KRT07898.1    KRT07899.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000053268    UP000235965    + More
UP000027135    UP000005203    UP000279307    UP000078492    UP000078542    UP000075809    UP000092462    UP000053105    UP000075903    UP000009046    UP000007062    UP000007819    UP000192223    UP000078540    UP000069272    UP000076502    UP000007755    UP000000673    UP000053825    UP000075900    UP000009192    UP000007266    UP000002282    UP000000803    UP000078541    UP000000304    UP000242457    UP000076407    UP000008711    UP000075920    UP000076408    UP000075883    UP000037069    UP000075884    UP000095300    UP000075882    UP000075902    UP000192221    UP000007801    UP000075886    UP000075885    UP000005205    UP000019118    UP000079169    UP000075840    UP000001292    UP000001070    UP000092553    UP000268350    UP000095301    UP000008792    UP000001819   

PRIDE

H9JKS3    Q9VTT0    Q7YU67    Q9U631   

Pfam

PF01437   PSI        + More
PF00090   TSP_1
PF01403   Sema
PF00313   CSD

Interpro

IPR036383   TSP1_rpt_sf        + More
IPR027231   Semaphorin       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR000884   TSP1_rpt       
IPR036352   Semap_dom_sf       
IPR016201   PSI       
IPR001627   Semap_dom       
IPR002165   Plexin_repeat       
IPR012340   NA-bd_OB-fold       
IPR019844   CSD_1       
IPR002059   CSP_DNA-bd       
IPR011129   CSD       

SUPFAM

SSF101912   SSF101912        + More
SSF82895   SSF82895       
SSF50249   SSF50249       

Gene 3D

2.130.10.10     2.20.100.10    

CDD

cd04458  CSP_CDS

ProteinModelPortal

H9JKS3   A0A2A4JXU7   A0A2W1BPF3   A0A3S2NQ82   A0A194RJE1   A0A2H1VVR5   + More
A0A194PZH7   A0A1L8DMH5   A0A1B6CGE7   A0A1B6DGV9   A0A2J7RLU3   A0A224XIE5   A0A1Q3FMD8   A0A1Q3FM20   A0A1Q3FM48   A0A1Q3FLU1   A0A067RM86   A0A088AFH5   A0A3L8DQJ7   A0A195EEJ4   A0A0C9RD74   A0A0C9QVG8   A0A151IFA6   A0A2M4D055   A0A2M4CZW7   A0A2M4DPB3   A0A0A9XBJ1   A0A151WUE7   A0A0K8SS39   A0A1B0D890   A0A0N0BJV7   A0A182UV17   A0A0P6J4Q4   E0VPJ5   A0A2H8TE71   T1IJU2   Q7QC32   J9K1H2   A0A310S489   A0A1W4XAR5   A0A0A1WZI9   A0A0A1WRU8   A0A195B4Z3   A0A182F704   A0A154PGZ2   W8AR08   F4W964   W5JWC2   A0A0L7QKV9   A0A182R9W3   B4L159   A0A0Q9XE35   D7EII6   B4PG84   Q9VTT0   A0A195F3E0   B4QQS6   Q7YU67   A0A1Y1K1S8   A0A2A3ECC7   A0A2P6LE75   A0A182XI64   B3NH55   A0A0K8U7C0   A0A0T6BC38   A0A182VX90   Q9U631   A0A182XX14   A0A034V9S3   A0A182MCW0   A0A0K8UJK8   A0A0L0CEV5   A0A034VAD4   A0A182NFF6   A0A1I8P2V2   A0A182LF87   A0A182TLH4   A0A1W4W6E2   A0A0P9AKP8   B3MAF5   A0A182Q8K5   A0A182P724   A0A158P0G6   N6U0L0   A0A3Q0ISN4   A0A182HT48   B4HFI0   B4IXY5   A0A0M5JBB1   A0A0P6ITU6   A0A3B0J649   A0A3B0JV33   A0A1I8N4G2   A0A3B0J5U5   A0A0P6C8U1   B4LC25   A0A0Q9WWC1   A0A0P5LZ35   A0A0P4XZM4   A0A0R3P400  

PDB

3OKY     E-value=1.19504e-72,     Score=698

KEGG

101744239    K06841 semaphorin 5 | (RefSeq) semaphorin-5A

GO

GO:0016021   GO:0016020   GO:0030335   GO:0045499   GO:0005615   GO:0001755   GO:0007411   GO:0048843   GO:0030215   GO:0050919   GO:0071526   GO:0048036   GO:0042048   GO:0001700   GO:0003676   GO:0005515   GO:0004383   GO:0006182   GO:0005216   GO:0006811   GO:0006032   GO:0004672   GO:0048384  

PANTHER

PTHR11036  

SignalP

Position:   1 - 20,         Likelihood:  0.956065

 

 

Length:

841

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06568

Exp number, first 60 AAs:

0.00117

Total prob of N-in:

0.00210

outside

1  -  841

 

 

Pi

254.339699

Theta

163.683891

Tajima's D

1.780273

CLR

0.330172

CSRT

0.846607669616519

Interpretation

Uncertain