Gene

KWMTBOMO03994

Pre Gene Modal

BGIBMGA010124

Annotation

PREDICTED:_semaphorin-5B_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr7(-):7899719-7902235      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.428

CDS

ATGGATAACGAATTGTACGCGATGCCGGCGTACAGCCAGTTCGATGAGGTGGCTTCGTTTGTATCAATGCCAAACGAGACCCTCAGCGTCGGGAGCATCGTCGGCTGTGTTATCGCTGCCTTTGTTATGGGCTGTCTACTCTGCTTGTCCCTTGTCATATTCTGCCAGCGCCGCGGCACGAGGATGCCATGGAAGAAACAGCATAGAGTTCCGTCAAGTCCTCACTACATCACAGCTAAACAAAACAGCTATGTGACCGTGCCTTTAAAGGAAGTGCCTCGTAAAGCAAAACGCCAGCCATCTTTTACTGGTATCGGAGGAGGCAGTGGGATTGTACTATCAAAGAGCAACAACATATCGAATGCTAATAACCACAATAATTCAGTTGCGACGCCCAAGCTTTACCCTAAGGCTATAGCAAATGAATACGATTCCATGGGAACGATAAGGAGGCACTCAAATCAACCGAACAACAAAAATAATTTGGATGTCGAAGAGGATAGATTTTATTAA

Protein

MDNELYAMPAYSQFDEVASFVSMPNETLSVGSIVGCVIAAFVMGCLLCLSLVIFCQRRGTRMPWKKQHRVPSSPHYITAKQNSYVTVPLKEVPRKAKRQPSFTGIGGGSGIVLSKSNNISNANNHNNSVATPKLYPKAIANEYDSMGTIRRHSNQPNNKNNLDVEEDRFY

Uniprot

H9JKS3   A0A2W1BPF3   A0A2A4JXU7   A0A2H1VVR5   A0A3S2NQ82   A0A194PZH7   + More
A0A194RJE1   A0A0L7LPM2   A0A2A3ECC7   A0A3L8DQJ7   A0A026WC50   A0A0L7QKV9   A0A088AFH5   A0A154PGZ2   A0A310S489   E2B8I4   E9J776   A0A0N0BJV7   F4W964   A0A195EEJ4   A0A158P0G6   A0A195B4Z3   A0A151IFA6   A0A195F3E0   A0A0A9XBJ1   A0A1B6K4N4   A0A2P8Y884   A0A1B6DGV9   A0A1B6CGE7   A0A1B6LK84   A0A1B6ICN0   A0A0C9RD74   A0A1B6FUX1   A0A2J7RLU3   A0A067RM86   A0A0C9QVG8   A0A2H8TE71   K7J4N7   A0A3Q0ISN4   J9K1H2   A0A0T6BC38  

Pubmed

19121390    28756777    26354079    26227816    30249741    24508170    + More
20798317    21282665    21719571    21347285    25401762    26823975    29403074    24845553    20075255   

EMBL

BABH01011623    KZ149940    PZC76932.1    NWSH01000377    PCG76845.1    ODYU01004694    + More
SOQ44846.1    RSAL01000155    RVE45650.1    KQ459582    KPI98726.1    KQ460075    KPJ17948.1    JTDY01000402    KOB77349.1    KZ288287    PBC29378.1    QOIP01000005    RLU22473.1    KK107293    EZA53246.1    KQ414940    KOC59161.1    KQ434902    KZC11082.1    KQ780658    OAD51942.1    GL446332    EFN88018.1    GL768421    EFZ11332.1    KQ435710    KOX79712.1    GL888002    EGI69246.1    KQ979039    KYN23269.1    ADTU01000987    ADTU01000988    ADTU01000989    ADTU01000990    KQ976598    KYM79566.1    KQ977800    KYM99564.1    KQ981855    KYN34901.1    GBHO01025529    GBHO01025527    GBRD01010183    GDHC01009373    JAG18075.1    JAG18077.1    JAG55641.1    JAQ09256.1    GECU01001563    JAT06144.1    PYGN01000812    PSN40455.1    GEDC01012369    GEDC01000635    JAS24929.1    JAS36663.1    GEDC01024893    JAS12405.1    GEBQ01015953    JAT24024.1    GECU01035195    GECU01030805    GECU01023044    JAS72511.1    JAS76901.1    JAS84662.1    GBYB01004881    JAG74648.1    GECZ01015759    GECZ01007941    JAS54010.1    JAS61828.1    NEVH01002683    PNF41802.1    KK852543    KDR21695.1    GBYB01007714    GBYB01013784    JAG77481.1    JAG83551.1    GFXV01000591    MBW12396.1    AAZX01003821    AAZX01010313    AAZX01010399    AAZX01010407    AAZX01012808    ABLF02027390    LJIG01002177    KRT84763.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000053240    UP000037510    + More
UP000242457    UP000279307    UP000053097    UP000053825    UP000005203    UP000076502    UP000008237    UP000053105    UP000007755    UP000078492    UP000005205    UP000078540    UP000078542    UP000078541    UP000245037    UP000235965    UP000027135    UP000002358    UP000079169    UP000007819   

PRIDE

H9JKS3   

Pfam

PF01437   PSI        + More
PF00090   TSP_1
PF01403   Sema

Interpro

IPR036383   TSP1_rpt_sf        + More
IPR027231   Semaphorin       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR000884   TSP1_rpt       
IPR036352   Semap_dom_sf       
IPR016201   PSI       
IPR001627   Semap_dom       
IPR002165   Plexin_repeat       

SUPFAM

SSF101912   SSF101912        + More
SSF82895   SSF82895       

Gene 3D

2.130.10.10     2.20.100.10    

ProteinModelPortal

H9JKS3   A0A2W1BPF3   A0A2A4JXU7   A0A2H1VVR5   A0A3S2NQ82   A0A194PZH7   + More
A0A194RJE1   A0A0L7LPM2   A0A2A3ECC7   A0A3L8DQJ7   A0A026WC50   A0A0L7QKV9   A0A088AFH5   A0A154PGZ2   A0A310S489   E2B8I4   E9J776   A0A0N0BJV7   F4W964   A0A195EEJ4   A0A158P0G6   A0A195B4Z3   A0A151IFA6   A0A195F3E0   A0A0A9XBJ1   A0A1B6K4N4   A0A2P8Y884   A0A1B6DGV9   A0A1B6CGE7   A0A1B6LK84   A0A1B6ICN0   A0A0C9RD74   A0A1B6FUX1   A0A2J7RLU3   A0A067RM86   A0A0C9QVG8   A0A2H8TE71   K7J4N7   A0A3Q0ISN4   J9K1H2   A0A0T6BC38  

KEGG

101744239    K06841 semaphorin 5 | (RefSeq) semaphorin-5A

GO

GO:0016021  

PANTHER

PTHR11036  

Length:

170

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.22828

Exp number, first 60 AAs:

23.22003

Total prob of N-in:

0.00934

POSSIBLE N-term signal

sequence

outside

1  -  32

TMhelix

33  -  55

inside

56  -  170

 

 

Pi

240.988671

Theta

170.991742

Tajima's D

1.169839

CLR

0.178453

CSRT

0.710914454277286

Interpretation

Uncertain