Silkworm Genome Informatics Database

Gene

KWMTBOMO03979 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010249

Annotation

PREDICTED:_SWI/SNF_complex_subunit_SMARCC2_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr7(+):7478751-7496095 View in EpiBrowser

Transcription factor

MYB

Location in the cell

Nuclear Reliability : 3.114

CDS

ATGAAAGTGTTTATGGACATGAAGCCGGGCGGTTCTCTGTGCACGGTGCTCGCCACCATGTTCCGTTTCAAGTCGGAGCAGCGGTGGCGTAAATTCGACTTCCAGGTCGGTAAGAACCCTTCGCGCAAAGATCTGAACGTGCAAATGATGATGGAGATCGAGTCGGCGTTGCTCGGTGCTGACGTCATCCGCTCGCCCTGCGTCTACATACGTTCGGAAGTCGATAAGGCCACCGCTAATAAGGTCAAAGACATCGTTGTCAATCATCAAGGAGAGATATGCGAAGACGAAGAGGACGCTACGCATATAATCTACCCGACGATGGATCCTCACGAGGAAGAGTACGCTCGTCCGGTGTTCAAACGCGGGAACCACGTACTCGTGCACTGGTACTATCTACCAGACAGTCACGACACTTGGGCACAGGCTGAACTACCCGTGGATACTCCTGAAGCCGTGAGTTGGGAGTGCACCCGAAGCGAGCCGTGGCGCGTCACCGCCTCGTGGGCGCTCGACCTGCCGCAATACAACGAGTGGATGAACGAGGAAGATTACGAGGTCGACGCTAACGGGAAAAAGAAGACTCACAAACTGCGCCTGTCCGTGGACGACCTCATTCCGGGCTCGGAGCCGTCCAGCAGGAGCAAGAAGGGAAGCAAGAGGAAGAGGTCGCCCTCGCCTCCACCACAGAAGCACAGCAAAAGGAAGAGTCGGTTGGCGAAGCGTCGCGAAAACGACGTGGACGAGGAGGAGGATAACGCTTCCCGCGACAACACTGACGTCACGCCCGCGCCCGACGCCGAAAAACCGCCGGAGCCGAGCACCACCTCAGCTAGCGCCTCGAATGCGAGTGCGAGTGCGAGTGGCAGTGCGAGTGCCAGTGCGGGCGCCACCGAGAGCGCGAGTGCCGTGGAGGCGCCCCCCACCCCAGCGCCGCATCCCGACTCACACGATGACTCGCAGGGAAAACATTCTGACTCTAACACACAGGAAATGCTTACCAAAGAAGAACTGGAGGACAACGTGACGGATCAGACTCACCACATCGTCGTGCCCTCTTACTCCGCCTGGTTCGACTACAACTCCATACACATGATCGAGAAACGCGCCCTACCAGAGTTTTTCAACGGAAAGAACAAGTCCAAAACTCCTGAAATATATCTAGCCTACAGGAACTTCATGATCGACACGTACCGCCTGAACCCGACCGAGTACCTGACGAGCACGGCGTGCCGCCGGAACCTGGCGGGCGACGTGTGCGCCATCATGCGCGTGCACGGCTTCCTGGAGCAGTGGGGGCTCGTCAACTACCAGCTGGAAACCGAGTCGCGTCCAACGGCAATGGGTCCGCCTCCGACGTCCCACTTCCACGTGCTGTCGGACACGCCGTCCGGACTGCAGCCGCTCATATCGCGGCCCGCGCAGCCCAGACCAGCCGAGAACGTTCCTAAAGTGGAGCCAGGTCTGCCCAACGGGGCGGAGAGCGGCGCCGCCCCGCCCGCAGCCCCGCTCAAGGTGGAGCCGGGACCAGAACTGCCTTCCGCGCCCGGGATCAAACTCGACCAGTACCGCGGAGGACAGCGCGGACGGGAGTGGACAGACCAAGAAACCCTTCTGCTGCTCGAAGGCCTGGAGCTACACCGCGACGACTGGAACCGCGTGGCCGCGCACGTCGGCACCAGGACCCAGGACGAATGCATCCTGCACTTCCTGCGGCTGCCCATCGAGGAGCCGTATCTGGACGAGCCGGGCTCGGCCGGAGTTCTAGGGCCGCTGGCCTACCAGCCCATACCCTTCAGCAAGACCGGCAACCCGGTCATGAGTACCGTCGCTTTCTTGGCCTCGGTCGTCGACCCCCGCATCGCGGCCAAAGCCACCAAAGCCGCGATGGATGAATTTGCTGCTATCAAGGACGAGGTGCCGGCCGCCATGATGGAGGCGCACGTGAAGGCGGCGGGCGCGCACGGAGCCGCCGCCGCGCTCGCCGCCACCGGCATCGCCGGCACCGCGCCCGAGCCCACAGGCGAAAAGAAAGAAGGCGGTTCAGAAGTAAAGAACGAGCCGATGGAAGTGGAGGAGAGCGACGCTAAGGTCAAGGAGGAACCGTCGGAACAAGCTCCGCCTGAAGACAAGGACGCCAAAGACGAGCCCGCGTCGCCGCAACCCTCAGAAGCCCCAGCTACTGTGGACGCCAAGCTACAGTCTGCCGCGTCTGCCGCGTTGGCAGCTGCGGCAGTTAAAGCCAAACATCTCGCCGGCGTCGAAGAACGTAAGATCAAGTCACTGGTGGCGCTCCTCGTCGAAACGCAGATGAAGAAATTGGAAATTAAACTTAGGCATTTTGAAGAACTAGAAGCCACCATGGAGAGGGAACGGGAAGGCCTGGAATACCAACGGCAGCAGCTGATACAGGAGCGACAGCAGTTCCACTTGGAGCAGCTCAAGGCAGCCGAGTTCCGATCGAAGCATCAGGCGCATCAAAGGTTAGTCCGCTGA

Protein

MKVFMDMKPGGSLCTVLATMFRFKSEQRWRKFDFQVGKNPSRKDLNVQMMMEIESALLGADVIRSPCVYIRSEVDKATANKVKDIVVNHQGEICEDEEDATHIIYPTMDPHEEEYARPVFKRGNHVLVHWYYLPDSHDTWAQAELPVDTPEAVSWECTRSEPWRVTASWALDLPQYNEWMNEEDYEVDANGKKKTHKLRLSVDDLIPGSEPSSRSKKGSKRKRSPSPPPQKHSKRKSRLAKRRENDVDEEEDNASRDNTDVTPAPDAEKPPEPSTTSASASNASASASGSASASAGATESASAVEAPPTPAPHPDSHDDSQGKHSDSNTQEMLTKEELEDNVTDQTHHIVVPSYSAWFDYNSIHMIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHGFLEQWGLVNYQLETESRPTAMGPPPTSHFHVLSDTPSGLQPLISRPAQPRPAENVPKVEPGLPNGAESGAAPPAAPLKVEPGPELPSAPGIKLDQYRGGQRGREWTDQETLLLLEGLELHRDDWNRVAAHVGTRTQDECILHFLRLPIEEPYLDEPGSAGVLGPLAYQPIPFSKTGNPVMSTVAFLASVVDPRIAAKATKAAMDEFAAIKDEVPAAMMEAHVKAAGAHGAAAALAATGIAGTAPEPTGEKKEGGSEVKNEPMEVEESDAKVKEEPSEQAPPEDKDAKDEPASPQPSEAPATVDAKLQSAASAALAAAAVKAKHLAGVEERKIKSLVALLVETQMKKLEIKLRHFEELEATMEREREGLEYQRQQLIQERQQFHLEQLKAAEFRSKHQAHQRLVR

Uniprot

H9JL48 A0A2A4JFD7 A0A2W1BPH1 A0A2H1V357 A0A3S2LDJ5 A0A212EV31 + More
A0A194QDM1 A0A0V0G5M0

Pubmed

19121390 28756777 22118469 26354079

EMBL

BABH01011590 BABH01011591 BABH01011592 NWSH01001580 PCG70805.1 KZ149940 + More
PZC76949.1 ODYU01000453 SOQ35278.1 RSAL01000202 RVE44408.1 AGBW02012248 OWR45358.1 KQ459167 KPJ03519.1 GECL01002776 JAP03348.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000007151 UP000053268

PRIDE

H9JL48

Pfam

PF00249   Myb_DNA-binding        + More
PF08450   SGL
PF16498   SWIRM-assoc_3
PF16496   SWIRM-assoc_2
PF16495   SWIRM-assoc_1
PF04433   SWIRM

Interpro

IPR013658   SGL        + More
IPR032450   SMARCC_N
IPR032451   SMARCC_C
IPR032448   SWIRM-assoc
IPR001005   SANT/Myb
IPR036388   WH-like_DNA-bd_sf
IPR017884   SANT_dom
IPR036420   BRCT_dom_sf
IPR009057   Homeobox-like_sf
IPR011042   6-blade_b-propeller_TolB-like
IPR030087   BAF155
IPR007526   SWIRM
IPR005511   SMP-30
IPR038044   SMARCC2

SUPFAM

SSF46689 SSF46689 + More
SSF52113 SSF52113

Gene 3D

1.10.10.10 2.120.10.30

CDD

cd00167 SANT

ProteinModelPortal

H9JL48 A0A2A4JFD7 A0A2W1BPH1 A0A2H1V357 A0A3S2LDJ5 A0A212EV31 + More
A0A194QDM1 A0A0V0G5M0

PDB

5GJK E-value=1.51164e-48, Score=490

KEGG

101743239 K11649 SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C | (RefSe

GO

GO:0071564 GO:0016514 GO:0003677 GO:0071565 GO:0005634 GO:0005515 GO:0016020 GO:0004872 GO:0005216 GO:0006811 GO:0006032 GO:0016021 GO:0004672 GO:0048384

PANTHER

PTHR12802:SF9 PTHR12802:SF105

Subcellular location

Nucleus

Length:

831

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0135

Exp number, first 60 AAs:

0.00277

Total prob of N-in:

0.00021

outside

1 - 831

Pi

235.437013

Theta

181.709978

Tajima's D

1.189554

CLR

0.045579

CSRT

0.709864506774661

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics