Gene

KWMTBOMO03974

Pre Gene Modal

BGIBMGA010136

Annotation

PREDICTED:_regulator_of_gene_activity_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr7(-):7418002-7426920      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.02

CDS

ATGGCAAACTTGAATTTTCAACAAGTGCCTCGAAGCCTAGCTAGTGGCGGAGTTGGTGGCGTTGGAGGCAGAGTGAGCTCAGGTCTTGTTGGTAGTGTCTCAGGACATGTGACACCAACTTTTGGGGGCGCCTTGTCGCCTGGCCGTAATTCAACTGCAATGCCAGGCGGAGCTCCCCCATCAATGGCATCTAGAGCTACGTTGTTTGGTCAACGAGCTTTTGCAGACCGAAGGGTTACAATGCCAACAACTTTATCTCAAGCTAATTCTAATTCAATGTCGAGTATGAGTAATCTGTCACGGTTCAACGCTGGCAACAACTACCATTCAGTTTTTGGTGAAGGTGGTGACACATCAACACCACCACTTCTGGACCTAAGCGAATTTCCATCACTAACAGCAAGAGGCGCGGGTGACCAAGCACCCACTACAGCACCACCACCTCCGGGCTCTAAACCCTATGTTGGTATGGTGAAGCAGCCGACATCGGAACAATCAGAATTTACAATGTCTTCGGAAGATTTTCCGGCGTTACCCGGCACGTCGACAGGCGCCAGTACGACGGGCGGCGCGACGGCGGCGGCGGTGGCGGTGGCCGGCGCCGGCGCCTCCACGGTCTCCGCGCCCGCACCTGCAGACATTGCACACGCACCAGACAAGACGCGCAAAGGGATACAGACTTCTCCTGAAGGCAAAGTAACAAACATACCGGATACAATGATACCAAACCAATTTGGAATAGTCGGTCTATTGACTTTTATCCGTGCTGCGGAATCGGACCCTAGTCTAGTGTCGCTAGCATTGGGACAGGATTTGACTGCTTTAGGATTGAATTTAAATTCACCTGATAACCTTAACTTGACGTTTGCTGGCCCATGGGCGGATACGCCTTGCAGACCACAGGACATGGATTATCACGTACCTCCCGAATATCTAATTAATGGTTCAATAAGAGAAAAACTAGCGCCTCTACGACTCGGAAGATATAAAGAAGATCTATTATTCTATTTGTTCTACTGTTTCGTTGGTGACGTTTTACAAATTGCGGCTGCAGCAGAGTTATACAATCGCGAATGGCGATATCATATGGAGGAGAAGGTGTGGATCTCACAAGCGCCCGGCATGCCAATGGTCGAGAAGACTTCAACGTACGAACGCGGCACCTACTACTTCTTCGATGCGCACAATTGGAGAAAGGTGCCGAAAGAGTTTCATTTGGATTACAGCAAGCTGGAGGGTCGGCCGCAGTTACCGCCCCATGTGCTCACGTAG

Protein

MANLNFQQVPRSLASGGVGGVGGRVSSGLVGSVSGHVTPTFGGALSPGRNSTAMPGGAPPSMASRATLFGQRAFADRRVTMPTTLSQANSNSMSSMSNLSRFNAGNNYHSVFGEGGDTSTPPLLDLSEFPSLTARGAGDQAPTTAPPPPGSKPYVGMVKQPTSEQSEFTMSSEDFPALPGTSTGASTTGGATAAAVAVAGAGASTVSAPAPADIAHAPDKTRKGIQTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLNSPDNLNLTFAGPWADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKEFHLDYSKLEGRPQLPPHVLT

Uniprot

A0A3S2LUQ6   S4PE40   A0A212FKC7   A0A2A4J8C6   A0A194Q300   A0A2W1BWB8   + More
A0A2A4J998   H9JKT5   A0A1B6LH48   E2B1P6   A0A2A3E1M6   A0A088A8W5   A0A195C3N8   A0A067QYU8   A0A151HZ87   F4WEW8   A0A158NNV3   A0A2J7R1T0   A0A151X7U7   A0A195FTE0   A0A154P5X1   A0A1B6E6A9   E9JBV7   A0A2J7R1T8   A0A151J3D5   A0A2P8ZAR8   A0A026WSY0   K7IWS6   D6WSE4   E2BZ69   A0A3L8DFU1   A0A2J7R1S6   A0A0C9RNF6   A0A0M8ZWX0   A0A232F5G0   A0A2R7WHL7   A0A1Y1L0Z2   A0A1B6GIH8   A0A1B6CNW3   A0A0P4W5Q9   A0A0P4W8U1   A0A087TRV2   A0A3R7MBS7   A0A0P5IN85   E9GPT2   A0A0P5BK94   A0A0N8A4Y1   A0A0P5BJQ4   A0A0P5JZF3   A0A0P6DBP8   A0A0P5DXF1   A0A0P5WS87   A0A0N7ZLS5   A0A0P5WH71   A0A0P5DAK3   A0A0P5EV11   A0A0N8A4E4   A0A0P4ZZH9   A0A0P5G3P6   A0A0P5NT15   A0A0P5ZW24   A0A0P5VYA7   A0A0P5ET17   A0A0P5D775   A0A0P5C0I8   A0A0P5DDD2   A0A0P5ZTK2   A0A0P4WMW6   A0A0P5Y9D5   A0A0P5MBE4   A0A0P5WY06   F6QSQ9   A6QNN2   A0A287AIC3   A0A2K6RBT8   F1MID5   A0A1D5Q3Q7   A0A2K6TJ86   A0A2J8K4I3   A0A2J8W167   A0A2I2ZNL5   A0A2R9CFR8   A0A2I3TWZ3   A0A2Y9EPL4   A0A2I3GTM0   A0A2K5RW14   A0A2K5WI00   A0A2K6A2T6  

Pubmed

23622113    22118469    26354079    28756777    19121390    20798317    + More
24845553    21719571    21347285    21282665    29403074    24508170    20075255    18362917    19820115    30249741    28648823    28004739    21292972    20431018    25362486    19393038    17431167    22398555    22722832    16136131   

EMBL

RSAL01000202    RVE44415.1    GAIX01003341    JAA89219.1    AGBW02008070    OWR54193.1    + More
NWSH01002417    PCG68335.1    KQ459579    KPI99379.1    KZ149940    PZC76956.1    PCG68336.1    BABH01011586    GEBQ01016951    JAT23026.1    GL444953    EFN60402.1    KZ288467    PBC25424.1    KQ978344    KYM94801.1    KK852818    KDR15707.1    KQ976693    KYM77652.1    GL888112    EGI67239.1    ADTU01002771    ADTU01002772    NEVH01008202    PNF34789.1    KQ982431    KYQ56451.1    KQ981268    KYN43880.1    KQ434823    KZC07316.1    GEDC01003825    JAS33473.1    GL771642    EFZ09629.1    PNF34788.1    KQ980284    KYN16949.1    PYGN01000121    PSN53593.1    KK107119    EZA58786.1    AAZX01004127    KQ971352    EFA06380.2    GL451577    EFN78975.1    QOIP01000009    RLU18779.1    PNF34790.1    GBYB01009904    GBYB01009905    GBYB01009907    GBYB01009908    JAG79671.1    JAG79672.1    JAG79674.1    JAG79675.1    KQ435812    KOX72780.1    NNAY01000895    OXU26031.1    KK854838    PTY19147.1    GEZM01067874    JAV67342.1    GECZ01007517    JAS62252.1    GEDC01022293    JAS15005.1    GDRN01081477    JAI62017.1    GDRN01081479    GDRN01081478    GDRN01081474    JAI62015.1    KK116466    KFM67841.1    QCYY01002158    ROT72423.1    GDIQ01210359    JAK41366.1    GL732557    EFX78439.1    GDIP01183587    JAJ39815.1    GDIP01182089    JAJ41313.1    GDIP01183586    JAJ39816.1    GDIQ01192961    JAK58764.1    GDIQ01080102    JAN14635.1    GDIP01155886    JAJ67516.1    GDIP01082243    JAM21472.1    GDIP01232937    JAI90464.1    GDIP01152496    GDIQ01123090    GDIQ01096652    GDIP01086653    GDIQ01086259    GDIQ01039066    LRGB01001581    JAL28636.1    JAM17062.1    KZS11041.1    GDIP01158895    JAJ64507.1    GDIP01154986    JAJ68416.1    GDIP01183585    JAJ39817.1    GDIP01205941    JAJ17461.1    GDIQ01247752    JAK03973.1    GDIQ01148388    JAL03338.1    GDIP01038606    JAM65109.1    GDIP01093446    JAM10269.1    GDIQ01268357    JAJ83367.1    GDIP01160237    JAJ63165.1    GDIP01182090    JAJ41312.1    GDIP01159238    JAJ64164.1    GDIP01039307    JAM64408.1    GDIP01254626    JAI68775.1    GDIP01061003    JAM42712.1    GDIQ01169764    JAK81961.1    GDIP01079940    JAM23775.1    AAMC01081998    AAMC01081999    AAMC01082000    AAMC01082001    BC148912    AAI48913.1    AEMK02000033    JSUE03007170    NBAG03000393    PNI29935.1    NDHI03003404    PNJ63525.1    CABD030085327    CABD030085328    CABD030085329    CABD030085330    CABD030085331    CABD030085332    CABD030085333    AJFE02026206    AJFE02026207    AJFE02026208    AJFE02026209    AACZ04072010    AACZ04072011    ADFV01185793    ADFV01185794    ADFV01185795    ADFV01185796    ADFV01185797    ADFV01185798    AQIA01011567    AQIA01011568   

Proteomes

UP000283053    UP000007151    UP000218220    UP000053268    UP000005204    UP000000311    + More
UP000242457    UP000005203    UP000078542    UP000027135    UP000078540    UP000007755    UP000005205    UP000235965    UP000075809    UP000078541    UP000076502    UP000078492    UP000245037    UP000053097    UP000002358    UP000007266    UP000008237    UP000279307    UP000053105    UP000215335    UP000054359    UP000283509    UP000000305    UP000076858    UP000008143    UP000008227    UP000233200    UP000009136    UP000006718    UP000233220    UP000001519    UP000240080    UP000002277    UP000001073    UP000233040    UP000233100    UP000233140   

PRIDE

H9JKT5   

Pfam

PF04153   NOT2_3_5

Interpro

IPR038635   CCR4-NOT_su2/3/5_N_sf        + More
IPR007282   NOT2/3/5_C       
IPR040168   Not2/3/5       

Gene 3D

2.30.30.1020    

ProteinModelPortal

A0A3S2LUQ6   S4PE40   A0A212FKC7   A0A2A4J8C6   A0A194Q300   A0A2W1BWB8   + More
A0A2A4J998   H9JKT5   A0A1B6LH48   E2B1P6   A0A2A3E1M6   A0A088A8W5   A0A195C3N8   A0A067QYU8   A0A151HZ87   F4WEW8   A0A158NNV3   A0A2J7R1T0   A0A151X7U7   A0A195FTE0   A0A154P5X1   A0A1B6E6A9   E9JBV7   A0A2J7R1T8   A0A151J3D5   A0A2P8ZAR8   A0A026WSY0   K7IWS6   D6WSE4   E2BZ69   A0A3L8DFU1   A0A2J7R1S6   A0A0C9RNF6   A0A0M8ZWX0   A0A232F5G0   A0A2R7WHL7   A0A1Y1L0Z2   A0A1B6GIH8   A0A1B6CNW3   A0A0P4W5Q9   A0A0P4W8U1   A0A087TRV2   A0A3R7MBS7   A0A0P5IN85   E9GPT2   A0A0P5BK94   A0A0N8A4Y1   A0A0P5BJQ4   A0A0P5JZF3   A0A0P6DBP8   A0A0P5DXF1   A0A0P5WS87   A0A0N7ZLS5   A0A0P5WH71   A0A0P5DAK3   A0A0P5EV11   A0A0N8A4E4   A0A0P4ZZH9   A0A0P5G3P6   A0A0P5NT15   A0A0P5ZW24   A0A0P5VYA7   A0A0P5ET17   A0A0P5D775   A0A0P5C0I8   A0A0P5DDD2   A0A0P5ZTK2   A0A0P4WMW6   A0A0P5Y9D5   A0A0P5MBE4   A0A0P5WY06   F6QSQ9   A6QNN2   A0A287AIC3   A0A2K6RBT8   F1MID5   A0A1D5Q3Q7   A0A2K6TJ86   A0A2J8K4I3   A0A2J8W167   A0A2I2ZNL5   A0A2R9CFR8   A0A2I3TWZ3   A0A2Y9EPL4   A0A2I3GTM0   A0A2K5RW14   A0A2K5WI00   A0A2K6A2T6  

PDB

4C0D     E-value=3.85231e-74,     Score=708

KEGG

101745492    K12605 CCR4-NOT transcription complex subunit 2 | (RefSeq) regulator of gene activity

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0030015   GO:0005634   GO:0006355   GO:0000932   GO:0017148   GO:0016021   GO:2000036   GO:0008061   GO:0004553   GO:0004568   GO:0006032   GO:0004672   GO:0048384  

PANTHER

PTHR23326  

Length:

423

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

11.17791

Exp number, first 60 AAs:

0.2132

Total prob of N-in:

0.04175

outside

1  -  423

 

 

Pi

192.275594

Theta

172.773085

Tajima's D

0.423133

CLR

1.047464

CSRT

0.493075346232688

Interpretation

Uncertain