Gene

KWMTBOMO03967

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr7(-):7246857-7248410      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.368

CDS

ATGATGATCCTGTTCTTCAAAAAAGGTGACAAAACCTTATTGAAGAACTATAGGCCCATAGCACTGCTGAGCCATATCTACAAGCTGTTCTCGAGAGTCATCACGAAGCGTCTCGAACGCAGGTTTGATGACTTCCAGCCTACCGAACAAGCCGGGTTCCGAAAAGGCTACAGTACCATAGACCACATACATACGCTGCGGCAGATTGTACAGAAGACCGAAGAGTACAATCGGCCATTATGCTTAGCGTTTGTGGACTATGAGAAAGCCTTTGATTCCGTCGAAACTTGGGCGGTCCTTAGATCTCTCCAGCGGTGCCGTATTGACCACCGGTACATCGAAGTATTGAAGTGTTTGTATAATAACGCCACCATGTCAGTCCGAGTACAGGAGCATTGCACGAAGGAAATCCCTGTAAAGAGAGGAGTGAGACAGGGAGATGTGATATCTCCGAAACTGTTTATCACTGCTCTGGAGGATTCCTTCAAGCTTCTGGAATGGCAAGGACTTGGCATCAATATTAACGGCGAATACATCACTCATCTTCGGTTTGCCGATGACATCGTGGTCATGGCAGAGTCGCTGGAAGATTTAGGGCGTATGCTCGGTGACCTCAGTAGGGTTTCTCAACAAGTGGGTCTTAAAATGAACATGGATAAAACAAAAATCATGTACAATGTCCATGTTGCACCCACCATAGTTACTGTTGGGAGCTCTACTCTTGAAGTTGTTGACGAATATATATACCTAGGACAGGCAGTCCGATTAGGTAGGTCCAACTTTGAGAGAGAGGTCAGTAGACGGATCCAACTCGGCTGGGCAGCGTTCGGTAAACTGCACAACGTCTTCTCGTCCAAAATACCTCAGTGCCTTAAGACAAAGGCGTACAACCAATGTGTGTTACCAGTGATGACTTACGGCTCTGAGACGTGGTGCTTCACTAGGGATCTTTTTAGAAGGCTCAAAGTCACGCAGCGAGCTATGGAGAGGGCTATGCTCGGCATTTCTCTACGGGATCGAATCCGAAATGAGGAGATCCGTAGAAGAACGAAGGTTGCTGACATAGCCCGTAGAATTAGTGAACTGAAGTGGCAATGGGCCGGCCACATAGCACGAAGAGAGGACGGTCGATGGGGCAGAAAGATCCTGGAGTGGCGACCACGTACTGGCAAGCGCAGTGTGGGACGGCCACCTACTAGATGGACCGACGACCTAGTAAAAAGCGCTGGGTCTCGTTGGATGCAGGTGGCAATGAACCGGTCGCACTGGAAATCTATTGGAGAGGCCTATGTTCAGCAGTGGACGGCGATAGGCTGA

Protein

MMILFFKKGDKTLLKNYRPIALLSHIYKLFSRVITKRLERRFDDFQPTEQAGFRKGYSTIDHIHTLRQIVQKTEEYNRPLCLAFVDYEKAFDSVETWAVLRSLQRCRIDHRYIEVLKCLYNNATMSVRVQEHCTKEIPVKRGVRQGDVISPKLFITALEDSFKLLEWQGLGININGEYITHLRFADDIVVMAESLEDLGRMLGDLSRVSQQVGLKMNMDKTKIMYNVHVAPTIVTVGSSTLEVVDEYIYLGQAVRLGRSNFEREVSRRIQLGWAAFGKLHNVFSSKIPQCLKTKAYNQCVLPVMTYGSETWCFTRDLFRRLKVTQRAMERAMLGISLRDRIRNEEIRRRTKVADIARRISELKWQWAGHIARREDGRWGRKILEWRPRTGKRSVGRPPTRWTDDLVKSAGSRWMQVAMNRSHWKSIGEAYVQQWTAIG

Uniprot

D7F158   D7F159   D7F164   A0A2W1BMB6   A4KWF2   A4KWG0   + More
A0A3S2TAR4   D7F157   D7F166   D7F165   D7F160   A0A3S2KX72   A4KWF4   W4YXJ1   A0A2G8JFM9   A0A2W1BLC9   A0A1E1X2U1   W4YXJ0   A0A2G8K4F2   D7F177   A0A2W1BCS2   A0A2W1BDX2   A0A0K0FAW8   A0A2W1B5F8   A0A2H1VY30   D7F176   D7F179   D7F178   A0A023GMF8   A0A023EXV2   A0A016TIA8   A0A3S2TRE0   A0A069DX96   A0A023EWU8   A0A016WEQ1   A0A0P4VWD0   A0A016S403   A0A016U784   A0A016WA79   A0A016S795   A0A016USZ5   A0A2W1BZV1   A0A016S5B2   A0A016VVN3   A0A016TQ81   A0A016TH80   A0A016VN75   A0A016VBB9   A0A016UUF2   A0A016VGM4   A0A016W5P9   A0A1E1XRS4   A0A2H1VS24   A0A016SSP6   A0A016UMK7   A0A016S1D2   A0A016UWI5   A0A016SGC3   A0A016UTS3   A0A016VMK8   A0A016UHW4   A0A016V7H3   A0A016VV56   A0A016RXU5   A0A016RYK0   A0A016UGM6   A0A016VTY8   A0A016SX67   A0A016T7J7   A0A016SM07   A0A016SL25   A0A016TXK2   A0A016VRX3   A0A016S5A1   A0A016SG46   A0A016V419   A0A016TK11   A0A016W4R1   A0A016RUR3   A0A016WVQ3   A0A016UEM0   A0A016T805   A0A016T5Z1   A0A016S4R3   A0A016WYN9   A0A016T636   A0A016VW83   A0A016US53   A0A016W1X2   A0A016SPR9   A0A016URH5   A0A016S524   A0A016U6B7   A0A016TK92   A0A016RRX8   A0A016SCL7   A0A016UYJ1   A0A016VGA0   A0A016SCZ8  

Pubmed

20470440    28756777    17360547    29023486    28503490    25474469    + More
25730766    26334808    27129103    29209593   

EMBL

FJ265543    ADI61811.1    FJ265544    ADI61812.1    FJ265549    ADI61817.1    + More
KZ150072    PZC74016.1    EF113398    EF113401    ABO45231.1    EF113402    ABO45239.1    RSAL01002362    RVE40503.1    FJ265542    ADI61810.1    FJ265551    ADI61819.1    FJ265550    ADI61818.1    FJ265545    ADI61813.1    RSAL01002130    RVE40575.1    EF113399    EF113400    ABO45233.1    AAGJ04144474    MRZV01002136    PIK34564.1    KZ149985    PZC75698.1    GFAC01005640    JAT93548.1    AAGJ04050748    MRZV01000899    PIK42833.1    FJ265562    ADI61830.1    KZ150485    PZC70710.1    KZ150108    PZC73382.1    KZ150317    PZC71439.1    ODYU01004982    SOQ45402.1    FJ265561    ADI61829.1    FJ265564    ADI61832.1    FJ265563    ADI61831.1    GBBM01001358    JAC34060.1    GBBI01004876    JAC13836.1    JARK01001434    EYC02684.1    RSAL01000016    RVE53061.1    GBGD01000453    JAC88436.1    GBBI01004877    JAC13835.1    JARK01000347    EYC38051.1    GDKW01001596    JAI54999.1    JARK01001639    EYB85201.1    JARK01001389    EYC11015.1    JARK01000460    EYC36749.1    JARK01001621    EYB86109.1    JARK01001364    EYC18031.1    KZ149907    PZC78256.1    JARK01001626    EYB85833.1    JARK01001340    EYC30828.1    JARK01001423    EYC04578.1    JARK01001438    EYC02012.1    JARK01001344    EYC28218.1    JARK01001349    EYC24735.1    JARK01001361    EYC19034.1    JARK01001346    EYC26784.1    JARK01000732    EYC35149.1    GFAA01001426    JAU02009.1    ODYU01004088    SOQ43598.1    JARK01001517    EYB93530.1    JARK01001370    EYC16151.1    JARK01001655    EYB84321.1    JARK01001362    EYC18843.1    JARK01001568    EYB89432.1    EYC18844.1    JARK01001343    EYC28635.1    JARK01001376    EYC14422.1    JARK01001351    EYC23395.1    EYC31295.1    JARK01001677    EYB83168.1    EYB83167.1    JARK01001378    EYC13977.1    JARK01001341    EYC30223.1    JARK01001500    EYB95040.1    EYC28825.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01001543    EYB91354.1    EYB91355.1    JARK01001406    EYC07496.1    EYC29807.1    JARK01001630    EYB85641.1    JARK01001565    EYB89683.1    JARK01001354    EYC21986.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001337    EYC34625.1    JARK01001711    EYB81734.1    JARK01000077    EYC43894.1    JARK01001380    EYC13322.1    JARK01001464    EYB98786.1    JARK01001470    JARK01000204    EYB98082.1    EYC40602.1    JARK01001636    EYB85342.1    JARK01000063    EYC44387.1    EYB98081.1    EYC40601.1    EYC31302.1    JARK01001365    EYC18010.1    EYC33297.1    JARK01001531    EYB92324.1    EYC18009.1    EYB85344.1    EYC10874.1    JARK01001432    EYC03125.1    JARK01001730    EYB81048.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001467    JARK01001463    JARK01001457    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001353    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    JARK01001359    EYC20046.1    EYC26445.1    JARK01001581    EYB88505.1   

Proteomes

UP000283053    UP000007110    UP000230750    UP000035680    UP000024635   

PRIDE

D7F158    D7F159    D7F164    D7F157    D7F166    D7F165    + More
D7F160    D7F177    D7F176    D7F179    D7F178   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01826   TIL
PF13855   LRR_8
PF10323   7TM_GPCR_Srv
PF01549   ShK

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR032675   LRR_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR019426   7TM_GPCR_serpentine_rcpt_Srv       
IPR017452   GPCR_Rhodpsn_7TM       
IPR003582   ShKT_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF57567   SSF57567       

Gene 3D

3.60.10.10     3.80.10.10    

ProteinModelPortal

D7F158   D7F159   D7F164   A0A2W1BMB6   A4KWF2   A4KWG0   + More
A0A3S2TAR4   D7F157   D7F166   D7F165   D7F160   A0A3S2KX72   A4KWF4   W4YXJ1   A0A2G8JFM9   A0A2W1BLC9   A0A1E1X2U1   W4YXJ0   A0A2G8K4F2   D7F177   A0A2W1BCS2   A0A2W1BDX2   A0A0K0FAW8   A0A2W1B5F8   A0A2H1VY30   D7F176   D7F179   D7F178   A0A023GMF8   A0A023EXV2   A0A016TIA8   A0A3S2TRE0   A0A069DX96   A0A023EWU8   A0A016WEQ1   A0A0P4VWD0   A0A016S403   A0A016U784   A0A016WA79   A0A016S795   A0A016USZ5   A0A2W1BZV1   A0A016S5B2   A0A016VVN3   A0A016TQ81   A0A016TH80   A0A016VN75   A0A016VBB9   A0A016UUF2   A0A016VGM4   A0A016W5P9   A0A1E1XRS4   A0A2H1VS24   A0A016SSP6   A0A016UMK7   A0A016S1D2   A0A016UWI5   A0A016SGC3   A0A016UTS3   A0A016VMK8   A0A016UHW4   A0A016V7H3   A0A016VV56   A0A016RXU5   A0A016RYK0   A0A016UGM6   A0A016VTY8   A0A016SX67   A0A016T7J7   A0A016SM07   A0A016SL25   A0A016TXK2   A0A016VRX3   A0A016S5A1   A0A016SG46   A0A016V419   A0A016TK11   A0A016W4R1   A0A016RUR3   A0A016WVQ3   A0A016UEM0   A0A016T805   A0A016T5Z1   A0A016S4R3   A0A016WYN9   A0A016T636   A0A016VW83   A0A016US53   A0A016W1X2   A0A016SPR9   A0A016URH5   A0A016S524   A0A016U6B7   A0A016TK92   A0A016RRX8   A0A016SCL7   A0A016UYJ1   A0A016VGA0   A0A016SCZ8  

PDB

5HHL     E-value=1.67282e-05,     Score=116

KEGG

101742651    no KO assigned | (RefSeq) uncharacterized LOC101742651

GO

GO:0004519   GO:0003964   GO:0016021  

Length:

438

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0846

Exp number, first 60 AAs:

0.03958

Total prob of N-in:

0.00549

outside

1  -  438

 

 

Pi

299.986955

Theta

203.45649

Tajima's D

1.517619

CLR

87.166168

CSRT

0.790460476976151

Interpretation

Uncertain