Gene

KWMTBOMO03952  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010234

Annotation

DNA-directed_RNA_polymerase_subunit_6-like_protein_[Bombyx_mori]

Location

Bomo_Chr7(+):6913194-6913995      View in EpiBrowser

Full name

Histone H2A      

Location in the cell

Nuclear   Reliability : 3.396

CDS

ATGGCAGATGAGGAGTACGAAGCCGATGATGGTGGTGCAGATTATGACGACATTGCAGAAGAAGATGATAACATTGAAGAAACAGAAGAACAGGAAGAAGATGGCTATAATGTGCAATGTCTGGCTTTGGGACAGGCTGGCGGTGGAGTTGACAAATCTAAACGTATAACTACTCGGTACATGACCAAATATGAGCGCGCGAGAGTTTTAGGAACCAGAGCTTTGCAAATAGCAATGTGTGCTCCTGTCATGGTGGAACTTGAAGGAGAAACTGATCCATTACAAATAGCCATGAAAGAGTTGAAGCATGGTAAAATTCCCATCATAATTCGAAGATATTTACCGGATCATTCATATGAAGACTGGAGCATAGATGAACTCATAATCATAGATCAATAA

Protein

MADEEYEADDGGADYDDIAEEDDNIEETEEQEEDGYNVQCLALGQAGGGVDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIIDQ

Subunit

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.

Similarity

Belongs to the histone H2A family.

Uniprot

H9JL33   Q2F660   A0A2A4JAX0   A0A2W1BXI5   A0A0L7LMJ0   A0A2H1WHJ2   + More
A0A1E1W0U4   A0A212EJG6   S4NWT5   A0A3S2LF80   A0A194QZQ3   A0A194PLJ5   T1PJ56   A0A0K8V0N6   A0A034W2N0   W8BXJ1   A0A0L0CDC8   A0A1A9WTY5   U5EWA4   V5GCG6   A0A1I8Q6R7   A0A1L8EDN7   D6WJA5   A0A1B0DIX6   A0A1L8DGY4   B8RJ41   A0A1Y1N7J3   Q17F62   A0A0L7R8W7   A0A2A3ECQ9   A0A088ARA0   J3JU72   A0A1B0G4N1   A0A1A9VG43   A0A1B0A1M8   A0A154P9Q4   A0A182N850   A0A023EGC1   B0XGQ1   A0A182XMB4   A0A182Q0H4   A0A182Y2Z1   A0A1C7CZ50   A0A182P9J8   A0A182UX15   A0A182K1Y5   A0A182UK83   Q7Q6F5   A0A182IUK0   A0A084WRT9   A0A1W4WHE8   A0A2J7PPI6   A0A067QUY8   A0A182RVZ4   A0A182MRA6   T1DQC7   A0A2M3Z9Y7   A0A182WI00   A0A2M4ANI2   A0A2M4C367   A0A182FCL8   A0A0M9ABB2   R4V4Z1   A0A2P8Z587   K7IWT4   A0A026W3T5   A0A195C1S3   W5JFU5   A0A151J0T9   F4WEY5   A0A195FRJ3   A0A2P8ZB98   E2AYL3   B4JSM8   A0A0J7L2I0   A0A151HZ96   A0A158NNK2   A0A232EZH8   E2BZT5   A0A2H8TYU7   C4WSH1   A0A1B6FMU3   A0A1B6DH13   A0A1B6I2K9   E2BQQ2   A0A1B6LZK0   A0A1S3CYH6   A0A182I248   A0A2R7WKP0  

Pubmed

19121390    28756777    26227816    22118469    23622113    26354079    + More
25315136    25348373    24495485    26108605    18362917    19820115    28004739    17510324    22516182    23537049    24945155    26483478    25244985    20966253    12364791    14747013    17210077    24438588    24845553    29403074    20075255    24508170    30249741    20920257    23761445    21719571    20798317    17994087    21347285    28648823   

EMBL

BABH01011543    DQ311212    ABD36157.1    NWSH01002306    PCG68570.1    KZ149930    + More
PZC77386.1    JTDY01000583    KOB76574.1    ODYU01008384    SOQ51934.1    GDQN01010471    JAT80583.1    AGBW02014474    OWR41615.1    GAIX01012422    JAA80138.1    RSAL01000161    RVE45421.1    KQ460930    KPJ10764.1    KQ459600    KPI94197.1    KA647943    AFP62572.1    GDHF01019966    JAI32348.1    GAKP01010587    GAKP01010585    JAC48365.1    GAMC01002561    GAMC01002558    JAC03998.1    JRES01000531    KNC30398.1    GANO01000653    JAB59218.1    GALX01000631    JAB67835.1    GFDG01001971    JAV16828.1    KQ971343    EFA03150.1    AJVK01063264    GFDF01008464    JAV05620.1    EZ000466    ACJ64340.1    GEZM01011790    JAV93438.1    CH477275    EAT45149.1    KQ414631    KOC67273.1    KZ288289    PBC29264.1    APGK01045269    BT126785    KB741033    KB632145    AEE61747.1    ENN74735.1    ERL89096.1    CCAG010017166    KQ434853    KZC08639.1    JXUM01157613    GAPW01005929    KQ572803    JAC07669.1    KXJ67991.1    DS233055    EDS27774.1    AXCN02000918    AAAB01008960    EAA11626.2    ATLV01026198    KE525407    KFB52933.1    NEVH01022660    PNF18257.1    KK852904    KDR14011.1    AXCM01002390    GAMD01002609    JAA98981.1    GGFM01004580    MBW25331.1    GGFK01009024    MBW42345.1    GGFJ01010625    MBW59766.1    KQ435711    KOX79649.1    KC741099    AGM32923.1    PYGN01000189    PSN51655.1    AAZX01000588    KK107447    QOIP01000001    EZA50717.1    RLU26972.1    KQ978344    KYM94797.1    ADMH02001620    ETN61755.1    KQ980603    KYN15181.1    GL888112    EGI67256.1    KQ981285    KYN43215.1    PYGN01000117    PSN53769.1    GL443930    EFN61464.1    CH916373    EDV94768.1    LBMM01001131    KMQ96858.1    KQ976693    KYM77662.1    ADTU01002753    NNAY01001516    OXU23729.1    GL451682    EFN78795.1    GFXV01007156    MBW18961.1    ABLF02010304    AK340187    AK341424    BAH70841.1    BAH71820.1    GECZ01018244    JAS51525.1    GEDC01016794    GEDC01012393    JAS20504.1    JAS24905.1    GECU01026540    JAS81166.1    GL450151    GL449798    EFN81440.1    EFN81971.1    GEBQ01010912    JAT29065.1    KK854999    PTY20203.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000007151    UP000283053    UP000053240    + More
UP000053268    UP000095301    UP000037069    UP000091820    UP000095300    UP000007266    UP000092462    UP000008820    UP000053825    UP000242457    UP000005203    UP000019118    UP000030742    UP000092444    UP000078200    UP000092445    UP000076502    UP000075884    UP000069940    UP000249989    UP000002320    UP000076407    UP000075886    UP000076408    UP000075882    UP000075885    UP000075903    UP000075881    UP000075902    UP000007062    UP000075880    UP000030765    UP000192223    UP000235965    UP000027135    UP000075900    UP000075883    UP000075920    UP000069272    UP000053105    UP000245037    UP000002358    UP000053097    UP000279307    UP000078542    UP000000673    UP000078492    UP000007755    UP000078541    UP000000311    UP000001070    UP000036403    UP000078540    UP000005205    UP000215335    UP000008237    UP000007819    UP000079169   

PRIDE

H9JL33    Q2F660   

Pfam

PF01192   RNA_pol_Rpb6        + More
PF16211   Histone_H2A_C
PF00125   Histone

Interpro

IPR020708   DNA-dir_RNA_polK_14-18kDa_CS        + More
IPR036161   RPB6/omega-like_sf       
IPR006110   Pol_omega/K/RPB6       
IPR012293   RNAP_RPB6_omega       
IPR006111   RpoK/Rpb6       
IPR028363   RPB6       
IPR009072   Histone-fold       
IPR032454   Histone_H2A_C       
IPR007125   Histone_H2A/H2B/H3       
IPR002119   Histone_H2A       
IPR032458   Histone_H2A_CS       

SUPFAM

SSF63562   SSF63562        + More
SSF47113   SSF47113       

Gene 3D

3.90.940.10     1.10.20.10    

CDD

cd00074  H2A

ProteinModelPortal

H9JL33   Q2F660   A0A2A4JAX0   A0A2W1BXI5   A0A0L7LMJ0   A0A2H1WHJ2   + More
A0A1E1W0U4   A0A212EJG6   S4NWT5   A0A3S2LF80   A0A194QZQ3   A0A194PLJ5   T1PJ56   A0A0K8V0N6   A0A034W2N0   W8BXJ1   A0A0L0CDC8   A0A1A9WTY5   U5EWA4   V5GCG6   A0A1I8Q6R7   A0A1L8EDN7   D6WJA5   A0A1B0DIX6   A0A1L8DGY4   B8RJ41   A0A1Y1N7J3   Q17F62   A0A0L7R8W7   A0A2A3ECQ9   A0A088ARA0   J3JU72   A0A1B0G4N1   A0A1A9VG43   A0A1B0A1M8   A0A154P9Q4   A0A182N850   A0A023EGC1   B0XGQ1   A0A182XMB4   A0A182Q0H4   A0A182Y2Z1   A0A1C7CZ50   A0A182P9J8   A0A182UX15   A0A182K1Y5   A0A182UK83   Q7Q6F5   A0A182IUK0   A0A084WRT9   A0A1W4WHE8   A0A2J7PPI6   A0A067QUY8   A0A182RVZ4   A0A182MRA6   T1DQC7   A0A2M3Z9Y7   A0A182WI00   A0A2M4ANI2   A0A2M4C367   A0A182FCL8   A0A0M9ABB2   R4V4Z1   A0A2P8Z587   K7IWT4   A0A026W3T5   A0A195C1S3   W5JFU5   A0A151J0T9   F4WEY5   A0A195FRJ3   A0A2P8ZB98   E2AYL3   B4JSM8   A0A0J7L2I0   A0A151HZ96   A0A158NNK2   A0A232EZH8   E2BZT5   A0A2H8TYU7   C4WSH1   A0A1B6FMU3   A0A1B6DH13   A0A1B6I2K9   E2BQQ2   A0A1B6LZK0   A0A1S3CYH6   A0A182I248   A0A2R7WKP0  

PDB

6O9L     E-value=1.07218e-32,     Score=343

KEGG

692837    K03014 DNA-directed RNA polymerases I, II, and III subunit RPABC2 | (RefSeq) DNA-directed RNA polyme

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0003899   GO:0003677   GO:0006351   GO:0005665   GO:0006366   GO:0006360   GO:0005666   GO:0005736   GO:0006383   GO:0005634   GO:0000786   GO:0046982   GO:0043565   GO:0016021   GO:0004672   GO:0048384  

Subcellular location

Chromosome  
Nucleus  

Length:

132

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.20492

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.22510

outside

1  -  132

 

 

Pi

20.071765

Theta

23.866808

Tajima's D

-0.358986

CLR

2.932925

CSRT

0.276786160691965

Interpretation

Uncertain