Gene

KWMTBOMO03951  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010139

Annotation

ribosomal_protein_S27_[Bombyx_mori]

Location

Bomo_Chr7(-):6910977-6912083      View in EpiBrowser

Full name

40S ribosomal protein S27      

Location in the cell

Nuclear   Reliability : 2.766

CDS

ATGCCGCTCGCAATTGATTTGTTGCATCCTTCCCCTGCGTCGGAGAGGAGGAAACATAAGCTTAAGCGGCTAGTGCCACATCCTAACTCTTATTTCATGGATGTTAAGTGCCCTGGCTGTTACAAGATTACAACAGTTTTTAGTCACGCACAGAGAGTGGTGGTCTGCGCTGGATGCTCAACGATCCTTTGTCAACCCACTGGTGGCCGTGCTAGATTAACTGAAGGATGTTCTTTTAGAAGAAAACAACATTAA

Protein

MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFRRKQH

Cofactor

Zn(2+)

Similarity

Belongs to the eukaryotic ribosomal protein eS27 family.

Uniprot

A0A3S2NUH1   E7DZ09   Q5UAL6   I4DMB4   I4DIN7   A0A2W1BW08   + More
A0A2A4J917   D1LYJ6   Q962Q3   A0A194R0J2   A7KCW8   G0ZEC8   A0A194PL86   A0A067RFC0   B1ABS8   A0A109NI12   A0A1B6G7W1   R4WD23   A0A1D2MPA5   A0A1B6MJZ8   Q0PXY2   A0A224XSC7   A0A0P4VSU8   A0A0V0G4G7   A0A069DVA7   R4FPB1   S4NLM7   A0A0U2T6K3   A0A0U2VE42   I3VPG0   A2IAD9   A0A164MKK9   E9H6T2   C8CLZ9   A6YPF9   A0A0P5YXE1   R9TEX5   T1E708   A0A182Y2Q1   A0A2C9GT49   A0A1C7CZ43   A0A2M3YXF2   A0A2M3ZYY4   A0A182PDQ8   A0A182M6H1   A0A182UNK9   A0A182NJV9   B6DDR7   A0A182WJV6   A0A182TRC2   A0A084WKZ7   A0A182WX24   Q7PT96   A0A182FEK3   A0A182RQW2   A0A182I2L6   A0A0P5Y828   A0A2C9GW49   A0A182IQD3   A0A0B4N6V1   A0A0K8TQF8   A0A0U2IG23   A0A2C9NEF2   A0A1A9XQ51   A0A1A9UNH3   A0A1B0BD92   A0A2C9NEH3   A0A2C9MDG7   T1E1W1   H2YUI4   Q5MIR3   B8XVN7   C6ZQX0   Q1HR58   A0A1W7R7R5   A0A0P6IGK0   A0A2K5KI02   A0A0U1SSQ5   A0A2I9LPQ1   A0A1Q3EUA1   A2I479   A0A1W7R9P3   B0WER7   Q29CR5   A0A1W4VLK2   B4M0L3   B4QUR4   B4K559   A0A3B0KDK0   B5DXH2   B4GLQ3   B3LWJ2   B4NIG1   B4IJJ1   B4JGZ0   B3P6N9   Q9VBU9   Q6XIL6   A0A1I8N9I7   A0A0L0BU32  

Pubmed

19121390    22651552    28756777    14668217    26354079    17603110    + More
24845553    23691247    27289101    27129103    26334808    23622113    26621068    28043022    23049752    17437641    21292972    19703296    18207082    25244985    20966253    19178717    20920257    23761445    24438588    12364791    14747013    17210077    26369729    24330624    17244540    20496585    17204158    17510324    29248469    15632085    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    23636399    26109357    26109356    14525923    17550304    25315136    26108605   

EMBL

RSAL01000183    RVE44871.1    HQ424712    ADT80656.1    BABH01011543    AY769342    + More
AAV34884.1    AK402432    BAM19054.1    AK401155    BAM17777.1    KZ149930    PZC77387.1    NWSH01002306    PCG68565.1    GU084270    ACY95303.1    AF400223    ODYU01008384    AAK92195.1    SOQ51933.1    KQ460930    KPJ10765.1    EF207957    ABS57436.1    JF265006    AEL28837.1    KQ459600    KPI94196.1    KK852669    KDR18843.1    EU439268    ACA24125.1    KC507323    AHB12446.1    GECZ01011396    JAS58373.1    AK417333    BAN20548.1    LJIJ01000734    ODM94909.1    GEBQ01003687    JAT36290.1    DQ673404    ABG81977.1    GFTR01001009    JAW15417.1    GDKW01000927    JAI55668.1    GECL01003552    JAP02572.1    GBGD01003650    JAC85239.1    ACPB03001653    GAHY01000969    JAA76541.1    GAIX01014626    JAA77934.1    KT755255    KT755257    ALS05089.1    KT755448    KY314211    KY314230    ALS05282.1    AQS22645.1    JW050242    AFK82399.1    EF179453    ABM55459.1    LRGB01002993    KZS05140.1    GL732598    EFX72565.1    GQ422296    ACV21023.1    EF638970    ABR27855.1    GDIP01051861    GDIQ01084569    JAM51854.1    JAN10168.1    KC989893    KT754261    KT754262    KT754263    KT754264    KT754266    AGN29666.1    ALS04095.1    GAMD01003437    JAA98153.1    GGFM01000191    MBW20942.1    GGFK01000443    MBW33764.1    AXCM01011251    EU934277    ADMH02000413    GGFL01004254    ACI30055.1    ETN66643.1    MBW68432.1    ATLV01024164    KE525350    KFB50891.1    AAAB01008807    EAA04241.2    APCN01000169    GDIP01062461    JAM41254.1    AXCN02000526    KJ877438    AIL48454.1    GDAI01001200    JAI16403.1    KT754265    ALS04099.1    CCAG010000387    JXJN01012382    GALA01001319    JAA93533.1    AY826147    AAV90719.1    FJ444820    ACJ74460.1    EZ114921    ACU30974.1    DQ440236    ABF18269.1    GEHC01000454    JAV47191.1    GDIQ01004742    JAN89995.1    EU252329    ACD11905.1    GFWZ01000364    MBW20354.1    GFDL01016151    JAV18894.1    EF070582    ABM55648.1    GFAH01000530    JAV47859.1    DS231911    EDS45830.1    CH475423    EAL29373.2    CH940650    EDW68392.1    CM000364    EDX14380.1    CH933806    EDW15059.1    OUUW01000008    SPP83816.1    CM000070    EDY68630.1    CH479185    EDW38477.1    CH902617    EDV41586.1    CH964272    EDW84784.1    CH480848    EDW51182.1    CH916369    EDV93768.1    CH954182    EDV53709.1    AE014297    AY118959    KX531981    AAF56428.1    AAM50819.1    ANY27791.1    AY231814    AY232000    CM000160    AAR09837.1    EDW98792.1    JRES01001345    KNC23521.1   

Proteomes

UP000283053    UP000005204    UP000218220    UP000053240    UP000053268    UP000027135    + More
UP000094527    UP000079169    UP000015103    UP000076858    UP000000305    UP000076408    UP000075881    UP000075882    UP000075885    UP000075883    UP000075903    UP000075884    UP000000673    UP000075920    UP000075902    UP000030765    UP000076407    UP000007062    UP000069272    UP000075900    UP000075840    UP000075886    UP000075880    UP000092444    UP000092443    UP000078200    UP000092460    UP000092445    UP000091820    UP000007875    UP000233060    UP000002320    UP000001819    UP000192221    UP000008792    UP000000304    UP000009192    UP000268350    UP000008744    UP000007801    UP000007798    UP000001292    UP000001070    UP000008711    UP000000803    UP000002282    UP000095301    UP000037069   

PRIDE

Q5UAL6    Q9VBU9   

Pfam

PF01667   Ribosomal_S27e

Interpro

IPR000592   Ribosomal_S27e        + More
IPR011332   Ribosomal_zn-bd       

SUPFAM

SSF57829   SSF57829       

ProteinModelPortal

A0A3S2NUH1   E7DZ09   Q5UAL6   I4DMB4   I4DIN7   A0A2W1BW08   + More
A0A2A4J917   D1LYJ6   Q962Q3   A0A194R0J2   A7KCW8   G0ZEC8   A0A194PL86   A0A067RFC0   B1ABS8   A0A109NI12   A0A1B6G7W1   R4WD23   A0A1D2MPA5   A0A1B6MJZ8   Q0PXY2   A0A224XSC7   A0A0P4VSU8   A0A0V0G4G7   A0A069DVA7   R4FPB1   S4NLM7   A0A0U2T6K3   A0A0U2VE42   I3VPG0   A2IAD9   A0A164MKK9   E9H6T2   C8CLZ9   A6YPF9   A0A0P5YXE1   R9TEX5   T1E708   A0A182Y2Q1   A0A2C9GT49   A0A1C7CZ43   A0A2M3YXF2   A0A2M3ZYY4   A0A182PDQ8   A0A182M6H1   A0A182UNK9   A0A182NJV9   B6DDR7   A0A182WJV6   A0A182TRC2   A0A084WKZ7   A0A182WX24   Q7PT96   A0A182FEK3   A0A182RQW2   A0A182I2L6   A0A0P5Y828   A0A2C9GW49   A0A182IQD3   A0A0B4N6V1   A0A0K8TQF8   A0A0U2IG23   A0A2C9NEF2   A0A1A9XQ51   A0A1A9UNH3   A0A1B0BD92   A0A2C9NEH3   A0A2C9MDG7   T1E1W1   H2YUI4   Q5MIR3   B8XVN7   C6ZQX0   Q1HR58   A0A1W7R7R5   A0A0P6IGK0   A0A2K5KI02   A0A0U1SSQ5   A0A2I9LPQ1   A0A1Q3EUA1   A2I479   A0A1W7R9P3   B0WER7   Q29CR5   A0A1W4VLK2   B4M0L3   B4QUR4   B4K559   A0A3B0KDK0   B5DXH2   B4GLQ3   B3LWJ2   B4NIG1   B4IJJ1   B4JGZ0   B3P6N9   Q9VBU9   Q6XIL6   A0A1I8N9I7   A0A0L0BU32  

PDB

4V6W     E-value=3.8893e-34,     Score=355

KEGG

692724    K02978 small subunit ribosomal protein S27e | (RefSeq) RpS27; ribosomal protein S27

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0046872   GO:0006412   GO:0003735   GO:0016021   GO:0022627   GO:0000028   GO:0022626   GO:0002181   GO:0005622   GO:0006325   GO:0043565   GO:0004672   GO:0048384  

PANTHER

PTHR11594  

Length:

84

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03823

Exp number, first 60 AAs:

0.02408

Total prob of N-in:

0.04820

outside

1  -  84

 

 

Pi

41.555008

Theta

54.769868

Tajima's D

-0.534427

CLR

230.526834

CSRT

0.230788460576971

Interpretation

Uncertain