Gene

KWMTBOMO03947

Pre Gene Modal

BGIBMGA002371

Annotation

PREDICTED:_uncharacterized_protein_LOC106715435_isoform_X1_[Papilio_machaon]

Location

Bomo_Chr7(+):6880184-6882975      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.21 Nuclear   Reliability : 1.123

CDS

ATGCTAAGCCGCAGAATTTTCAATTTTATCAGATACATCACCCGAACCCATGTAACGCTCGCAGGACGTGGTACGAGAAACTTTAGAATTCCAATTGCATTAGGAATATTTAGTGCTGCAAAATGCGACAACATTTTTGACGGTTTATCGAGTGCCGATACGTTAGAACACGAGTTTTTGATTAAGCAGGCGACAACAGTGAATGTTAATGCGGCCACACAGTTGCTGACCGTAACTCTAGTAGCTATACAAGATACAAGTGAACGATTACGTGATGCACTATCAAAAGAAATATGCTTAGTACAACAAGCACTTGAATGGGGGGAAGAAGGAACACCTCCTCATCATTGGGATCAACTTGTTGCAATTCGAGGATCTTTGAGTGACCTTAAGCACAATCTTCGTACTTTGATAAGTTATATGGATTATGCTGAAAAGCTGGCCACAGTTGCAGCAGAAATATCATATTTATCTGGCAATGTTATTGCTTCAGATGCTATTTGTGAAAGGATAGAGCATGCTAACAGGACATGCAACATTCAGAAACAGTTGAACCATGATCTTCAGCAAGAAAGTCTTGAACTTCAACAAAGAGCTATCATCACATCTCCACAGCTCGAAGAGAAACTGAAACAAGATTCAGCAAAGGATAAGTCTAATGCAAAGACTTGA

Protein

MLSRRIFNFIRYITRTHVTLAGRGTRNFRIPIALGIFSAAKCDNIFDGLSSADTLEHEFLIKQATTVNVNAATQLLTVTLVAIQDTSERLRDALSKEICLVQQALEWGEEGTPPHHWDQLVAIRGSLSDLKHNLRTLISYMDYAEKLATVAAEISYLSGNVIASDAICERIEHANRTCNIQKQLNHDLQQESLELQQRAIITSPQLEEKLKQDSAKDKSNAKT

Similarity

Belongs to the bacterial ribosomal protein bL20 family.

Uniprot

H9IYN7   I4DPD2   A0A3S2L3N0   A0A2H1W0E6   A0A0L7LLZ1   A0A2W1BSS4   + More
A0A212EJG8   A0A2A4JCC9   A0A067RC65   K7JJM2   A0A2J7RM67   A0A069DQ57   A0A0V0GC33   A0A2P8XZM8   A0A088ARD9   A0A2A3EEJ0   A0A1B6EQC5   A0A0P4VPS9   A0A1B6H6C1   T1HVR6   A0A1B6DEX6   A0A0M9A6H1   A0A2R7X2D7   E0VX58   T1JIK1   A0A1E1X5Z5   A0A023FDL2   A0A224YL04   A0A131YG21   A0A0K8RNR0   A0A2R5LCG1   A0A1A8UYA9   A0A1A8QB16   A0A1A8S0A2   A0A1Z5KXP1   A0A1A8E2K9   A0A1A8KW86   A0A1A8QTX8   A0A1A8GYN7  

Pubmed

19121390    22651552    26354079    26227816    28756777    22118469    + More
24845553    20075255    26334808    29403074    27129103    20566863    28503490    28797301    26830274    28528879   

EMBL

BABH01043948    AK403538    KQ459600    BAM19772.1    KPI94200.1    RSAL01000183    + More
RVE44868.1    ODYU01005440    SOQ46292.1    JTDY01000583    KOB76573.1    KZ149930    PZC77391.1    AGBW02014474    OWR41611.1    NWSH01002016    PCG69416.1    KK852559    KDR21352.1    NEVH01002572    PNF41927.1    GBGD01002899    JAC85990.1    GECL01000710    JAP05414.1    PYGN01001118    PSN37446.1    KZ288282    PBC29586.1    GECZ01029659    JAS40110.1    GDKW01003415    JAI53180.1    GECU01037494    GECU01034964    JAS70212.1    JAS72742.1    ACPB03006777    GEDC01013044    JAS24254.1    KQ435726    KOX78217.1    KK856530    PTY25969.1    DS235829    EEB17964.1    JH431693    GFAC01004491    JAT94697.1    GBBK01005067    JAC19415.1    GFPF01007182    MAA18328.1    GEDV01011132    JAP77425.1    GADI01001122    JAA72686.1    GGLE01003074    MBY07200.1    HADY01023341    HAEJ01011870    SBS52327.1    HAEI01004927    SBR90985.1    HAEH01021035    SBS11706.1    GFJQ02007252    JAV99717.1    HADZ01005976    HAEA01011922    SBQ40402.1    HAED01013416    HAEE01016403    SBR36453.1    HAEF01005264    HAEG01014199    SBR96972.1    HAEB01018339    HAEC01007497    SBQ75635.1   

Proteomes

UP000005204    UP000053268    UP000283053    UP000037510    UP000007151    UP000218220    + More
UP000027135    UP000002358    UP000235965    UP000245037    UP000005203    UP000242457    UP000015103    UP000053105    UP000009046   

PRIDE

H9IYN7   

Pfam

PF09057   Smac_DIABLO        + More
PF00078   RVT_1
PF00453   Ribosomal_L20

Interpro

IPR009062   Smac/DIABLO-like_sf        + More
IPR015142   Smac_DIABLO       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR005813   Ribosomal_L20       
IPR035566   Ribosomal_protein_L20_C       

SUPFAM

SSF46984   SSF46984        + More
SSF56219   SSF56219       
SSF74731   SSF74731       

Gene 3D

3.60.10.10     1.10.1900.20    

CDD

cd07026  Ribosomal_L20

ProteinModelPortal

H9IYN7   I4DPD2   A0A3S2L3N0   A0A2H1W0E6   A0A0L7LLZ1   A0A2W1BSS4   + More
A0A212EJG8   A0A2A4JCC9   A0A067RC65   K7JJM2   A0A2J7RM67   A0A069DQ57   A0A0V0GC33   A0A2P8XZM8   A0A088ARD9   A0A2A3EEJ0   A0A1B6EQC5   A0A0P4VPS9   A0A1B6H6C1   T1HVR6   A0A1B6DEX6   A0A0M9A6H1   A0A2R7X2D7   E0VX58   T1JIK1   A0A1E1X5Z5   A0A023FDL2   A0A224YL04   A0A131YG21   A0A0K8RNR0   A0A2R5LCG1   A0A1A8UYA9   A0A1A8QB16   A0A1A8S0A2   A0A1Z5KXP1   A0A1A8E2K9   A0A1A8KW86   A0A1A8QTX8   A0A1A8GYN7  

KEGG

101743712    no KO assigned | (RefSeq) uncharacterized LOC101743712

GO

GO:0005739   GO:0006919   GO:0006915   GO:0005840   GO:0003735   GO:0019843   GO:0006412   GO:0016573   GO:0006325   GO:0043565   GO:0016021   GO:0004672   GO:0048384  

PANTHER

PTHR32247   PTHR10986  

Length:

223

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03581

Exp number, first 60 AAs:

0.01224

Total prob of N-in:

0.05155

outside

1  -  223

 

 

Pi

243.195773

Theta

196.732205

Tajima's D

0.562683

CLR

0.302284

CSRT

0.534373281335933

Interpretation

Uncertain