Gene

KWMTBOMO03946

Pre Gene Modal

BGIBMGA009968

Annotation

PREDICTED:_F-box/WD_repeat-containing_protein_4-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr7(+):6871214-6878164      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.168 Nuclear   Reliability : 1.432 PlasmaMembrane   Reliability : 1.232

CDS

ATGTCGATCAATATTTTGCAGTTGCCTATACATATTTTAGCTAATATCTTAAGAAATTTAAAACTAGGAGATATCAGAAATGTGATATTAACATGTAAAACTTTCAAGAATTTAATAGTTAACGATAATGGAGTATGGAGAGCGATTTGTGAAGATAGATTAATTTTGCATAATAACTCTGAAAGAAATGACACAAGTACATGGTACAACAAATGTCGTATTTCAAAGAACTGGTGGAATGGCATTTATAAGAGAAAGGTAATTTTACAAACCTCATCAAACTACATGCCATGGCTGAAATACCACAATTCAGAATTCTTGATCTTCTCGCTTGGCTCAGAACTTTTCTGCCATGCTTCGGACCAAAAAGGATTCCCAAACAGTAGAGCAAACTGGAAAATTAACGTTCCCACAGTGAAGAGAAGTGATGTGAGGACCAATGATATATCTCGATTTGTTGTTAGTGACAATATGATAGCCTGCGGAAATAGAGATGGTAGCTTGTCAATATATAAAGTGAAAAAAATGAAAAAAAGGCCTCGATTAATCCAGCATATTAAAGACTGTCATGAGGAAGGTCAAGTAGAAGTATCAGCTGTAGAAATTATAGAAAGTGTAGATGGTTACTTCATAGTGACTGCATCTGGGAAAAGTCCTAGTGTTGTACTTTGGCAGTCAAATGAACGTTGCTTATTTCAAAGTGAAATAGATATAGCTATACCCAATGGTAATGCAGTTAAATCTCTAGCTGTCTCTAACACAAAGGATATGCTTGCTGTTGGTCTTGATGGAAACAGTTGGCCCATTTTGCTTGACGTTAATACGGCCACTATATTGATGACAGCTGAAAGAACTGTGAATGTAAGGCAAGTAGTGCGAGATATTCAGTGGCGTAATGAAAACACTATTATATATGTGACACATTCAGGAATGCTAAATCAGATAGACACAAGAATCCAAAAAATTGTCTATGACGCCAAAGATCCTTTTCTATCTCGATTGTACTGTGTAAAAACTGACCACAACAATGCAATATTGGTTGGGTCATCAGAGTATTCGCGCTGCGTACTCTTCGACGCAAGAAATCGTTCTAGTCATGTACAGATGTATTTCACCCAACGACGACCATCTCCTGTTTATAGTCTTGACTTCGATTCTACAAAATTAATTGCTGCCGCCGATCGTGGATTGACTGTGCTGAATTTTAACATCAATGGAAAAGCAATACGGCAACGTGACTATTCGCATGTTTTTCACTCGATGTAA

Protein

MSINILQLPIHILANILRNLKLGDIRNVILTCKTFKNLIVNDNGVWRAICEDRLILHNNSERNDTSTWYNKCRISKNWWNGIYKRKVILQTSSNYMPWLKYHNSEFLIFSLGSELFCHASDQKGFPNSRANWKINVPTVKRSDVRTNDISRFVVSDNMIACGNRDGSLSIYKVKKMKKRPRLIQHIKDCHEEGQVEVSAVEIIESVDGYFIVTASGKSPSVVLWQSNERCLFQSEIDIAIPNGNAVKSLAVSNTKDMLAVGLDGNSWPILLDVNTATILMTAERTVNVRQVVRDIQWRNENTIIYVTHSGMLNQIDTRIQKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSRCVLFDARNRSSHVQMYFTQRRPSPVYSLDFDSTKLIAAADRGLTVLNFNINGKAIRQRDYSHVFHSM

Uniprot

A0A1E1WEW5   A0A1E1WQG5   A0A2A4JBD5   A0A2H1VZT4   A0A212EJG9   A0A194PL91   + More
A0A0L7LMA6   A0A1B6KIY8   A0A1B6HXB9   A0A0C9RU82   A0A1B6GCN2   E2APS2   D6WCF8   A0A1Y1M7G8   A0A026X3J2   A0A2C9JZ40   E0VG18   A0A1S3JJL5   A0A151ILQ8   A0A1S3K004   A0A232FE56   A0A023GJK2   A0A0L8G4T3   V4A5Z5   R7U835   G3MRF3   A0A3L8DZY1   A0A158NVH5   G3NI25   A0A026WN60   A0A154PLR3   A0A2R5LLA1   K7J5C0   U4UJ18   T1JH75   A0A3Q2Q6R0   A0A3P8NPY8   A0A151I3G9   A0A3Q0SPV0   A0A151JA15   E2C1K0   A0A3B4EZU1   A0A195FKU0   A0A3Q2WS35   B4LD67   V5HXC8   A0A088A4G6   B5XCQ6   A0A3B4Y7Y6   A0A210PP80   A0A1B6EE02   A0A0N0BFH3   A0A2A3EGA0   A0A293N009   A0A1A8MJ79   A0A1B0DE46   B7PX78   A0A3Q3RYK5   A0A0F8BW69   H2L5M5   A0A1A7WXX4   A0A146NDS6   A0A0M4EDU2   A0A1E1X5D5   A0A3B4DKR6   A0A1A8DFF1   A0A1A8GGE2   A0A1A8QTX4   A0A131YNN6   A0A224YX45   L7M8G0   A0A3Q3FKT8   I3K633   A0A0P6GQ39   A0A0P5JJY8   A0A3P9J834   A0A2D0QRF3   A0A023FGR5   A0A1A8IFK1   A0A0P6GH21   A0A0P5KP63   A0A0L7QMV0   A0A3P8YGS9   A0A0P6GK23   A0A162P9P1   A0A1L8DN95   A0A0K8TS47   B4KYY8   A0A2U9CDB5   A0A1A9WBN7   A0A131XMV5   V9L020   A0A3B3RBP9   F6YLQ4  

Pubmed

22118469    26354079    26227816    20798317    18362917    19820115    + More
28004739    24508170    30249741    15562597    20566863    28648823    23254933    22216098    21347285    20075255    23537049    17994087    25765539    20433749    28812685    25835551    17554307    28503490    26830274    28797301    25576852    25186727    25069045    26369729    28049606    24402279    29240929    20431018   

EMBL

GDQN01005555    JAT85499.1    GDQN01001897    JAT89157.1    NWSH01002016    PCG69417.1    + More
ODYU01005440    SOQ46293.1    AGBW02014474    OWR41610.1    KQ459600    KPI94201.1    JTDY01000583    KOB76577.1    GEBQ01028557    JAT11420.1    GECU01028393    JAS79313.1    GBYB01012315    GBYB01012316    JAG82082.1    JAG82083.1    GECZ01009706    JAS60063.1    GL441581    EFN64548.1    KQ971311    EEZ99019.2    GEZM01042412    JAV79876.1    KK107019    QOIP01000007    EZA62628.1    RLU20144.1    DS235131    EEB12324.1    KQ977104    KYN05809.1    NNAY01000342    OXU29066.1    GBBM01001296    JAC34122.1    KQ423941    KOF71868.1    KB202444    ESO90405.1    AMQN01008910    KB304204    ELU02316.1    JO844454    AEO36071.1    QOIP01000002    RLU25368.1    ADTU01027159    KK107163    EZA56539.1    KQ434948    KZC12394.1    GGLE01006092    MBY10218.1    AAZX01004900    KB632345    ERL93077.1    JH432222    KQ976494    KYM83294.1    KQ979348    KYN21851.1    GL451937    EFN78176.1    KQ981512    KYN40877.1    CH940647    EDW69948.1    GANP01005285    JAB79183.1    BT048825    ACI68626.1    NEDP02005569    OWF38310.1    GEDC01001145    JAS36153.1    KQ435803    KOX73091.1    KZ288266    PBC30249.1    GFWV01020991    MAA45719.1    HAEF01015280    SBR56439.1    AJVK01032546    ABJB010915642    DS812038    EEC11200.1    KQ042127    KKF18750.1    HADW01009161    HADX01011168    SBP10561.1    GCES01156727    JAQ29595.1    CP012525    ALC43821.1    GFAC01004716    JAT94472.1    HADZ01018707    HAEA01003139    SBQ31619.1    HAEB01011055    HAEC01002753    SBQ70830.1    HAEH01013369    SBR97230.1    GEDV01008389    JAP80168.1    GFPF01007727    MAA18873.1    GACK01004704    JAA60330.1    AERX01042180    AERX01042181    AERX01042182    AERX01042183    AERX01042184    AERX01042185    AERX01042186    GDIQ01030215    JAN64522.1    GDIQ01201873    JAK49852.1    GBBK01004569    JAC19913.1    HAED01008958    SBQ95170.1    GDIQ01033271    JAN61466.1    GDIQ01182575    JAK69150.1    KQ414885    KOC59869.1    GDIQ01032283    JAN62454.1    LRGB01000512    KZS18658.1    GFDF01006146    JAV07938.1    GDAI01000630    JAI16973.1    CH933809    EDW18880.2    CP026257    AWP14561.1    GEFH01001690    JAP66891.1    JW872413    AFP04931.1    AAMC01062444    AAMC01062445    AAMC01062446    AAMC01062447    AAMC01062448    AAMC01062449    AAMC01062450   

Proteomes

UP000218220    UP000007151    UP000053268    UP000037510    UP000000311    UP000007266    + More
UP000053097    UP000279307    UP000076420    UP000009046    UP000085678    UP000078542    UP000215335    UP000053454    UP000030746    UP000014760    UP000005205    UP000007635    UP000076502    UP000002358    UP000030742    UP000265000    UP000265100    UP000078540    UP000261340    UP000078492    UP000008237    UP000261460    UP000078541    UP000264840    UP000008792    UP000005203    UP000087266    UP000261360    UP000242188    UP000053105    UP000242457    UP000092462    UP000001555    UP000261640    UP000001038    UP000092553    UP000261440    UP000261660    UP000005207    UP000265200    UP000221080    UP000053825    UP000265140    UP000076858    UP000009192    UP000246464    UP000091820    UP000261540    UP000008143   

Pfam

PF12937   F-box-like        + More
PF00646   F-box
PF00400   WD40

Interpro

IPR036047   F-box-like_dom_sf        + More
IPR036322   WD40_repeat_dom_sf       
IPR001810   F-box_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR020472   G-protein_beta_WD-40_rep       
IPR019775   WD40_repeat_CS       
IPR032675   LRR_dom_sf       

SUPFAM

SSF50978   SSF50978        + More
SSF81383   SSF81383       

Gene 3D

2.130.10.10     3.80.10.10    

ProteinModelPortal

A0A1E1WEW5   A0A1E1WQG5   A0A2A4JBD5   A0A2H1VZT4   A0A212EJG9   A0A194PL91   + More
A0A0L7LMA6   A0A1B6KIY8   A0A1B6HXB9   A0A0C9RU82   A0A1B6GCN2   E2APS2   D6WCF8   A0A1Y1M7G8   A0A026X3J2   A0A2C9JZ40   E0VG18   A0A1S3JJL5   A0A151ILQ8   A0A1S3K004   A0A232FE56   A0A023GJK2   A0A0L8G4T3   V4A5Z5   R7U835   G3MRF3   A0A3L8DZY1   A0A158NVH5   G3NI25   A0A026WN60   A0A154PLR3   A0A2R5LLA1   K7J5C0   U4UJ18   T1JH75   A0A3Q2Q6R0   A0A3P8NPY8   A0A151I3G9   A0A3Q0SPV0   A0A151JA15   E2C1K0   A0A3B4EZU1   A0A195FKU0   A0A3Q2WS35   B4LD67   V5HXC8   A0A088A4G6   B5XCQ6   A0A3B4Y7Y6   A0A210PP80   A0A1B6EE02   A0A0N0BFH3   A0A2A3EGA0   A0A293N009   A0A1A8MJ79   A0A1B0DE46   B7PX78   A0A3Q3RYK5   A0A0F8BW69   H2L5M5   A0A1A7WXX4   A0A146NDS6   A0A0M4EDU2   A0A1E1X5D5   A0A3B4DKR6   A0A1A8DFF1   A0A1A8GGE2   A0A1A8QTX4   A0A131YNN6   A0A224YX45   L7M8G0   A0A3Q3FKT8   I3K633   A0A0P6GQ39   A0A0P5JJY8   A0A3P9J834   A0A2D0QRF3   A0A023FGR5   A0A1A8IFK1   A0A0P6GH21   A0A0P5KP63   A0A0L7QMV0   A0A3P8YGS9   A0A0P6GK23   A0A162P9P1   A0A1L8DN95   A0A0K8TS47   B4KYY8   A0A2U9CDB5   A0A1A9WBN7   A0A131XMV5   V9L020   A0A3B3RBP9   F6YLQ4  

PDB

6CVZ     E-value=0.0481487,     Score=86

KEGG

105841663    K10262 F-box and WD-40 domain protein 4 | (RefSeq) F-box/WD repeat-containing protein 4-like

GO

GO:0019005   GO:0031146   GO:0005515   GO:0005740   GO:0006348   GO:0016573   GO:0006325   GO:0043565   GO:0016021   GO:0004672   GO:0048384  

Length:

421

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00678

Exp number, first 60 AAs:

0.00117

Total prob of N-in:

0.00166

outside

1  -  421

 

 

Pi

254.37713

Theta

204.56909

Tajima's D

2.438275

CLR

0.143836

CSRT

0.937753112344383

Interpretation

Uncertain