SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03940  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA010142
Annotation
_putative_cuticle_protein_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.375 PlasmaMembrane   Reliability : 1.147
 

Sequence

CDS
ATGGCCTTCAAGCTCGCTGTCCTGGTCTGCGCATTTGCGGCTGTTCGAGCAGGCTTTGTTCCTGCGGCATACACCGCACATCCTGCTCCAGTCGCATATGCAGCTGCTCCCGTGGTACATGCTGCTCCGGCTGCTCATCTCATACACGCTAGTCCCGTAGCGTACGCCGCCCCATTCGCCAAAGTTGCCGCTGTCGCCCCGGTCGCTAAAGTCGAGGAATACGACGCTCATCCTCAGTACAGCTTCGCTTACGACGTGCAAGACAGTCTAACTGGTGACTCGAAGACTCAACACGAGACCCGCGATGGCGACGTCGTTCAAGGCTCCTACTCCGTCGTTGACCCCGATGGCACCAAGCGCACTGTTGACTACACCGCCGACCCCCACAACGGTTTCAATGCTGTCGTGCACAAGGAGCCCCTCGCCCACGTTGCTAAAGTTGCCAAAATTGCCGCCCCTCTGACCTATGCCGCAGGTCCCCTTGTGCACGCCGCACCCGTTGTGCACGCCGCTCCTATTGTGCACGCCGCTCCCGTGGCCTACTCTGCTCCAATCTACCATCATTAA
Protein
MAFKLAVLVCAFAAVRAGFVPAAYTAHPAPVAYAAAPVVHAAPAAHLIHASPVAYAAPFAKVAAVAPVAKVEEYDAHPQYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPHNGFNAVVHKEPLAHVAKVAKIAAPLTYAAGPLVHAAPVVHAAPIVHAAPVAYSAPIYHH

Summary

Pfam
PF00379   Chitin_bind_4
Interpro
IPR000618   Insect_cuticle        + More
IPR031311   CHIT_BIND_RR_consensus       

Ontologies

Topology

SignalP
Position:   1 - 17,         Likelihood:  0.915755
 
 
Length:
188
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
19.8194
Exp number, first 60 AAs:
17.67672
Total prob of N-in:
0.61583
POSSIBLE N-term signal
sequence
outside
1  -  188
 
 

Population Genetic Test Statistics

Pi
322.908424
Theta
229.069282
Tajima's D
1.597389
CLR
42.459352
CSRT
0.815209239538023
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28467696 TVDYSADSVNGFNAVVR 96.15 4e-12
28467696 VEEKEGIPPQQQR 95.83 1e-10
27102218 GIEIGGSR 100.00 7e-07
28467696 DGDVVQGSYSVVDPDGTK 100.00 7e-07
29197581 YVISSGIAGAAAWAVDMDDFR 100.00 7e-07
28467696 DGDVVQGSYSVVDPDGIKR 100.00 6e-06
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