Silkworm Genome Informatics Database

Gene

KWMTBOMO03939 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010143

Annotation

cuticular_protein_RR-2_motif_70_precursor_[Bombyx_mori]

Location

Bomo_Chr7(-):6822804-6824063 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 1.566

CDS

ATGGCTTTTAAGGTCGTTGTATTCTCCTGCCTGGTTGCCATGGCTTGTGCCAGCGCTCCTCTCGTTGCCGAGCCTGTAGTGGCGGCCCCAGCCGTAGCGGCCAGACTTGAAGAATTTGACCCACTCCCTCAATATAGATTCGGATACGACGTAGCGGACTCTCTCACTGGTGACTACAAAAGCCAACAAGAAGAACGCAACGGCGACTTAGTGCAGGGTTCCTACTCGCTCGTTGAACCTGACGGTACCCGTCGTACTGTTGATTATTCTGCTGACTCTGTGAATGGGTTCAACGCGGTAGTACGCAAGGAGCCTCTTGTGGCTGCCGCTCCTGCTGTAGTCGCCGAGCCTGCCGTAGTACCAGCCCGCATCGCTGCTGCTCGCGTTGTGGCCGCACCCGTAGCTGCCCCTGTTGTTCCTGTTGCGGCACGTTTGGCTGCTGCGCCGGTCGTTGCTGCCCCCGTCGCGAAGTACACCGCTGCCTATACAGCTCCTCTTGCGTATAGTGCTCCAGTTGCTGCTGCCTACCCGGCCCCACTAAGAGCAGCGTACCCTGCTCCCATCGCCAGATACGTCGCTCTCTAA

Protein

MAFKVVVFSCLVAMACASAPLVAEPVVAAPAVAARLEEFDPLPQYRFGYDVADSLTGDYKSQQEERNGDLVQGSYSLVEPDGTRRTVDYSADSVNGFNAVVRKEPLVAAAPAVVAEPAVVPARIAAARVVAAPVAAPVVPVAARLAAAPVVAAPVAKYTAAYTAPLAYSAPVAAAYPAPLRAAYPAPIARYVAL

Uniprot

NA

ProteinModelPortal

NA

KEGG

100379402 no KO assigned | (RefSeq) CPR70, BmorCPR70; cuticular protein RR-2 motif 70

GO

GO:0042302 GO:0005634 GO:0006348 GO:0016573 GO:0006325 GO:0043565 GO:0016021 GO:0004672 GO:0048384

SignalP

Position: 1 - 23, Likelihood: 0.981397

Length:

194

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

19.33475

Exp number, first 60 AAs:

16.10326

Total prob of N-in:

0.70280

POSSIBLE N-term signal

sequence

inside

1 - 4

TMhelix

5 - 27

outside

28 - 194

Pi

201.643365

Theta

181.452518

Tajima's D

0.422962

CLR

0.001002

CSRT

0.494325283735813

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
21761556	KEPLVAAAPAVVAEPAVVPAR	100.00	2e-06
21761556	KEPLVAAAPAVVAEPAVVPAR	100.00	2e-06
28556443	NGDLVQGSYSLVEPDGTR	100.00	2e-06
28556443	NGDLVQGSYSLVEPDGTR	100.00	2e-06
28556443	LEEFDPLPQYR	100.00	2e-06
28556443	NGDLVQGSYSLVEPDGTR	100.00	2e-06
28556443	KEPLVAAAPAVVAEPAVVPAR	100.00	2e-06
28556443	KEPLVAAAPAVVAEPAVVPAR	100.00	2e-06
24093152	TTYEEIK	100.00	5e-05
27102218	YTAAYTAPIAYSAPVAAAYPAPIR	100.00	5e-05
28467696	TVDYAAGAEGFNAVVR	100.00	5e-05
21761556	NGDLVQGSYSLVEPDGTR	100.00	5e-05
28556443	SAPVAAAYPAPLR	100.00	5e-05
28556443	SAPVAAAYPAPLR	100.00	5e-05
28556443	FGYDVADSLTGDYK	100.00	0.002
28556443	FGYDVADSLTGDYK	100.00	0.002
28556443	EPLVAAAPAVVAEPAVVPAR	100.00	0.002
28556443	FGYDVADSLTGDYK	100.00	0.002
28556443	EPLVAAAPAVVAEPAVVPAR	100.00	0.002
28556443	EPLVAAAPAVVAEPAVVPAR	100.00	0.002

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree