SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03939  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA010143
Annotation
cuticular_protein_RR-2_motif_70_precursor_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 1.566
 

Sequence

CDS
ATGGCTTTTAAGGTCGTTGTATTCTCCTGCCTGGTTGCCATGGCTTGTGCCAGCGCTCCTCTCGTTGCCGAGCCTGTAGTGGCGGCCCCAGCCGTAGCGGCCAGACTTGAAGAATTTGACCCACTCCCTCAATATAGATTCGGATACGACGTAGCGGACTCTCTCACTGGTGACTACAAAAGCCAACAAGAAGAACGCAACGGCGACTTAGTGCAGGGTTCCTACTCGCTCGTTGAACCTGACGGTACCCGTCGTACTGTTGATTATTCTGCTGACTCTGTGAATGGGTTCAACGCGGTAGTACGCAAGGAGCCTCTTGTGGCTGCCGCTCCTGCTGTAGTCGCCGAGCCTGCCGTAGTACCAGCCCGCATCGCTGCTGCTCGCGTTGTGGCCGCACCCGTAGCTGCCCCTGTTGTTCCTGTTGCGGCACGTTTGGCTGCTGCGCCGGTCGTTGCTGCCCCCGTCGCGAAGTACACCGCTGCCTATACAGCTCCTCTTGCGTATAGTGCTCCAGTTGCTGCTGCCTACCCGGCCCCACTAAGAGCAGCGTACCCTGCTCCCATCGCCAGATACGTCGCTCTCTAA
Protein
MAFKVVVFSCLVAMACASAPLVAEPVVAAPAVAARLEEFDPLPQYRFGYDVADSLTGDYKSQQEERNGDLVQGSYSLVEPDGTRRTVDYSADSVNGFNAVVRKEPLVAAAPAVVAEPAVVPARIAAARVVAAPVAAPVVPVAARLAAAPVVAAPVAKYTAAYTAPLAYSAPVAAAYPAPLRAAYPAPIARYVAL

Summary

Uniprot
ProteinModelPortal

Ontologies

Topology

SignalP
Position:   1 - 23,         Likelihood:  0.981397
 
 
Length:
194
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
19.33475
Exp number, first 60 AAs:
16.10326
Total prob of N-in:
0.70280
POSSIBLE N-term signal
sequence
inside
1  -  4
TMhelix
5  -  27
outside
28  -  194
 
 

Population Genetic Test Statistics

Pi
201.643365
Theta
181.452518
Tajima's D
0.422962
CLR
0.001002
CSRT
0.494325283735813
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
21761556 KEPLVAAAPAVVAEPAVVPAR 100.00 2e-06
21761556 KEPLVAAAPAVVAEPAVVPAR 100.00 2e-06
28556443 NGDLVQGSYSLVEPDGTR 100.00 2e-06
28556443 NGDLVQGSYSLVEPDGTR 100.00 2e-06
28556443 LEEFDPLPQYR 100.00 2e-06
28556443 NGDLVQGSYSLVEPDGTR 100.00 2e-06
28556443 KEPLVAAAPAVVAEPAVVPAR 100.00 2e-06
28556443 KEPLVAAAPAVVAEPAVVPAR 100.00 2e-06
24093152 TTYEEIK 100.00 5e-05
27102218 YTAAYTAPIAYSAPVAAAYPAPIR 100.00 5e-05
28467696 TVDYAAGAEGFNAVVR 100.00 5e-05
21761556 NGDLVQGSYSLVEPDGTR 100.00 5e-05
28556443 SAPVAAAYPAPLR 100.00 5e-05
28556443 SAPVAAAYPAPLR 100.00 5e-05
28556443 FGYDVADSLTGDYK 100.00 0.002
28556443 FGYDVADSLTGDYK 100.00 0.002
28556443 EPLVAAAPAVVAEPAVVPAR 100.00 0.002
28556443 FGYDVADSLTGDYK 100.00 0.002
28556443 EPLVAAAPAVVAEPAVVPAR 100.00 0.002
28556443 EPLVAAAPAVVAEPAVVPAR 100.00 0.002
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