Gene

KWMTBOMO03938

Pre Gene Modal

BGIBMGA010144

Annotation

PREDICTED:_tetratricopeptide_repeat_protein_25-like_[Amyelois_transitella]

Location

Bomo_Chr7(-):6819633-6821613      View in EpiBrowser

Full name

Tetratricopeptide repeat protein 25      

Location in the cell

Cytoplasmic   Reliability : 1.322 Mitochondrial   Reliability : 1.603 Nuclear   Reliability : 1.302

CDS

ATGGAGGAAAAACAACTCTACGGTGCGTTGACAGTTTATCGTGAACGTGGGGCTTATTTGCGACGCCTCGAACAGTTCGAAAAAGCAAAGGCATCTTATGACGAAGCCTTTAAAAGCAGTCCTGAAGATGTCAGAACATTAACAGGTCGCAGTCAAGTTTGCGCAGATGCTGTGCAACCAATACAAGCATATTCTGATGCAGAACTTGCACTAAAACTTGAACCAGAGAATATGAATGCCCGTAACATGCAGTCCAGAGCAATGTATACAATGTCTGATTTCGAAAGATCAGTCGTTATGAATTTTCGAGGAGCCCGAATCCGAAAACAGCCTCCTTACTTCATGGAAGGTATTAATCAGGGAGTGGAAACTATACAAGACTGCATAGGGGTTAATGCTGGTTCAGTTATGGTAGATTTTTTGCCACTTATCAAACAAAATGAAGCTCTTCGTCCAGACGATGACGAACCTCTAAAGCCAGTACATATTTCAAGAATTCCTAAGCCTGAACGAAAACGTAAACTTACGCAAATGGAAGCACGGAAACATTTGACTTTAGCGCGCGTATTGGCTATGAAATACTTGGGACCGATGGCTTATGATAAGTTTTTCCTCCAAGAACTTACTGAGGACCCCCGTATTAACTCAGCTAATTCTGTCGGTAGCACAGAACTGAAGGCGTTAGTCAAAGAAGCTTTACGTTCTCTTAGCGAACGACAAGACATGCTTCGTTCTCAAAAACCTTACTATTCTATTAAACTAGCTGAAAAGGCCGAATCAAAACACCAAAATCAATACCGAGAAGCTGTACTAGTTAAAGAAAGAGAAATCGGTGCACATACCGCTGAAAGACTTTTGAAATCAATAGATAAAAGCTTACGTGCTAATCGAGTGATGGAAGTAATAGCGCAAGCTGAACGAATGCAACTTTTCTTAGATAACAAAACTCCACGAACTTTACCTGACAAGGATTTATATACTGATCGACTATATAGAGCCGTAGGAGAAGCTTATTTGTCTCAACATCGACTATCTTACACACTAAGTGATAGAGGCAATAAACGTAGAATCGCATTCCTCATGGGCTTGCCGGTAGGGCGACCGCAGTCTTTCGACTCTGTGATGGCAAATTATCCTTACAAATTTATAGATATCAAACAAGCAACTGAAAAAGTAGTATTAACGCTCGAAATGTGTGAAAACTCTACAATGAAATGCTGGTTAATGTACGAACTAGCTAGACTGCTTTGCTTACAAAAAAATTATGCTTTAGCGAAATTTTATGCGAAACGTTGTCAGCGAGAAGCTCAAGAATTAGCCAACGTTACATGGTGGCTGAATGGATGTTTTGTGCTAATGAGCGGTGATATGCAACAAGGCAATGCAAATGAGGTGCGAATACAAGTAGAAGAAGCATATGAATGGTCTAAAAAGATGCAGGATCCAGAACGAGTTCAGGCCTTTTTGGGGAAATGTGCTGAAATGGCAGCCGAAGCTGTGTCCGCTGATGAACGTAAAGCAATAGTTCAAAGAGAACGGCAAATTGTTGGTGTGATGGACGAGGAGCAAAAGATCGAAACACAAGTATTATTCAAACGCATGTCTACAGTACCAGCTGGACGAAGGTTCTCTGTGTTACCGCGCAAGCAAGATGCCGGAGAAGCAAAATCTGAACGAAAGCGACGACGGCAGCGCGGCCTATCTGTTATCCCTGGACCGGAACAAGCTTTGCCACCGCCTCCGCAATCCGACACTCGCGGTTTTCAAATCTTTGACATTTAG

Protein

MEEKQLYGALTVYRERGAYLRRLEQFEKAKASYDEAFKSSPEDVRTLTGRSQVCADAVQPIQAYSDAELALKLEPENMNARNMQSRAMYTMSDFERSVVMNFRGARIRKQPPYFMEGINQGVETIQDCIGVNAGSVMVDFLPLIKQNEALRPDDDEPLKPVHISRIPKPERKRKLTQMEARKHLTLARVLAMKYLGPMAYDKFFLQELTEDPRINSANSVGSTELKALVKEALRSLSERQDMLRSQKPYYSIKLAEKAESKHQNQYREAVLVKEREIGAHTAERLLKSIDKSLRANRVMEVIAQAERMQLFLDNKTPRTLPDKDLYTDRLYRAVGEAYLSQHRLSYTLSDRGNKRRIAFLMGLPVGRPQSFDSVMANYPYKFIDIKQATEKVVLTLEMCENSTMKCWLMYELARLLCLQKNYALAKFYAKRCQREAQELANVTWWLNGCFVLMSGDMQQGNANEVRIQVEEAYEWSKKMQDPERVQAFLGKCAEMAAEAVSADERKAIVQRERQIVGVMDEEQKIETQVLFKRMSTVPAGRRFSVLPRKQDAGEAKSERKRRRQRGLSVIPGPEQALPPPPQSDTRGFQIFDI

Description

Required for the docking of the outer dynein arm to cilia, hence plays an essential role in cilia motility.

Keywords

Alternative splicing   Cell projection   Cytoplasm   Cytoskeleton   Repeat   TPR repeat   Complete proteome   Reference proteome  

Feature

chain  Tetratricopeptide repeat protein 25
splice variant  In isoform 2.

Uniprot

A0A212FAI4   H9JKU3   A0A2W1BST4   A0A2A4K0Z3   A0A0L7K4M2   A0A194PSW0   + More
A0A194QZ96   A0A194PMJ7   A0A194R0K7   A0A194R4J5   A0A212FK56   A0A0N1IPW1   A0A2A4K4T4   N6TQL8   A0A194QBB0   H9JC11   E0VQD2   A0A087ZZW3   F4WAC2   A0A2A3EQJ1   A0A1B6GWY4   A0A026WQ21   A0A1B6LBS6   A0A1B6JPQ7   A0A195CU39   A0A0L7R1S1   A0A158NL91   A0A195E4A3   A0A151I1S9   A0A0C9RB81   K7JTX5   A0A154P325   A7S020   A0A1B6CII3   F7CPE2   W5N4I5   Q68BM1   A0A1S3R7K0   A0A210QRH4   A0A232ERZ9   K1RRA8   A0A3P8YQS2   W4YIM3   Q32NU8-2   A0A1L8ERM3   Q32NU8   A0A0K8SPJ1   A0A0A9WKE7   E9IZ16   H2LFB6   V4AU95   F6XJ23   A0A2G8K737   A0A3P9GZW2   E2AQ16   A0A060W2G2   A0A0X3P6K7   F6TBG8   A0A0X3P955   A0A2D0T403   A0A2C9JRJ3   A0A2C9JRK0   A0A1X7UHK0   A0A2C9JRJ4   A0A3B4DE83   F1RBQ8   A0A3M7PSB1   M3XJ02   H3AJE1   Q7ZU45   A0A151PCH1   A0A151PC66   G1KTE2   A0A3B3Q711   A0A3Q3MZH0   A0A3Q0HIJ4   A0A1W5AWJ5   A0A2C9JRJ2   F6T4B2   A0A3N0Y2F9   A0A0K8SPX2   A0A096P5R0   A0A3P8NFY4   H0WQC9   A0A226EPZ8   A0A1D2N735   F6ZC29   A0A093I7T7   A0A3Q1H2G2   A0A384CXH9   A0A337S391   A0A2K6G721  

Pubmed

22118469    19121390    28756777    26227816    26354079    23537049    + More
20566863    21719571    24508170    21347285    20075255    17615350    20431018    16546127    28812685    28648823    22992520    25069045    17961536    27486780    27762356    25401762    21282665    17554307    23254933    18464734    29023486    20798317    24755649    19892987    15562597    23594743    30375419    9215903    25860617    22293439    29240929    27289101    17495919    17975172   

EMBL

AGBW02009472    OWR50741.1    BABH01011540    KZ149930    PZC77401.1    NWSH01000258    + More
PCG77941.1    JTDY01011566    KOB55545.1    KQ459600    KPI94215.1    KQ460930    KPJ10782.1    KPI94213.1    KPJ10780.1    KPJ10781.1    AGBW02008157    OWR54089.1    KQ459998    KPJ18502.1    NWSH01000129    PCG79265.1    APGK01024667    KB740558    KB632357    ENN80353.1    ERL93466.1    KQ459232    KPJ02828.1    BABH01014627    DS235418    EEB15588.1    GL888048    EGI68805.1    KZ288194    PBC33977.1    GECZ01002821    JAS66948.1    KK107152    EZA57199.1    GEBQ01018856    JAT21121.1    GECU01006507    JAT01200.1    KQ977306    KYN03649.1    KQ414667    KOC64783.1    ADTU01019003    ADTU01019004    KQ979701    KYN19684.1    KQ976551    KYM80850.1    GBYB01005580    JAG75347.1    AAZX01006212    KQ434809    KZC06271.1    DS469559    EDO42886.1    GEDC01024024    JAS13274.1    AAMC01088081    AAMC01088082    AHAT01029063    AB117794    BAD38896.2    NEDP02002300    OWF51288.1    NNAY01002549    OXU21076.1    JH816585    EKC36966.1    AAGJ04060413    BC108468    BC068935    CM004482    OCT62008.1    GBRD01010656    JAG55168.1    GBHO01035713    JAG07891.1    GL767078    EFZ14190.1    KB200650    ESP00853.1    MRZV01000823    PIK43821.1    GL441649    EFN64473.1    FR904376    CDQ61282.1    GEEE01015641    JAP47584.1    GEEE01019509    JAP43716.1    BX901973    REGN01009072    RNA02032.1    AFYH01171241    AFYH01171242    AFYH01171243    AFYH01171244    AFYH01171245    BC051126    AKHW03000499    KYO46680.1    KYO46681.1    RJVU01053643    ROL27965.1    GBRD01010655    JAG55169.1    AHZZ02010377    AHZZ02010378    AAQR03042756    AAQR03042757    AAQR03042758    AAQR03042759    LNIX01000002    OXA59227.1    LJIJ01000172    ODN01080.1    KL206986    KFV87915.1    AANG04000144   

Proteomes

UP000007151    UP000005204    UP000218220    UP000037510    UP000053268    UP000053240    + More
UP000019118    UP000030742    UP000009046    UP000005203    UP000007755    UP000242457    UP000053097    UP000078542    UP000053825    UP000005205    UP000078492    UP000078540    UP000002358    UP000076502    UP000001593    UP000008143    UP000018468    UP000087266    UP000242188    UP000215335    UP000005408    UP000265140    UP000007110    UP000186698    UP000001038    UP000030746    UP000002279    UP000230750    UP000265200    UP000000311    UP000193380    UP000002281    UP000221080    UP000076420    UP000007879    UP000261440    UP000000437    UP000276133    UP000008672    UP000050525    UP000001646    UP000261540    UP000261640    UP000189705    UP000192224    UP000028761    UP000265100    UP000005225    UP000198287    UP000094527    UP000002280    UP000053584    UP000265040    UP000261680    UP000011712    UP000233160   

PRIDE

H9JKU3    H9JC11   

Pfam

PF13181   TPR_8        + More
PF17874   TPR_MalT
PF07719   TPR_2
PF13176   TPR_7
PF01477   PLAT
PF05881   CNPase

Interpro

IPR013026   TPR-contain_dom        + More
IPR011990   TPR-like_helical_dom_sf       
IPR019734   TPR_repeat       
IPR040111   TTC25       
IPR041617   TPR_MalT       
IPR013105   TPR_2       
IPR037060   Catalase_core_sf       
IPR001024   PLAT/LH2_dom       
IPR036392   PLAT/LH2_dom_sf       
IPR008431   CNPase       
IPR009097   cNuc_Pdiesterase       
IPR027417   P-loop_NTPase       

SUPFAM

SSF48452   SSF48452        + More
SSF49723   SSF49723       
SSF52540   SSF52540       
SSF55144   SSF55144       

Gene 3D

1.25.40.10     2.40.180.10    

ProteinModelPortal

A0A212FAI4   H9JKU3   A0A2W1BST4   A0A2A4K0Z3   A0A0L7K4M2   A0A194PSW0   + More
A0A194QZ96   A0A194PMJ7   A0A194R0K7   A0A194R4J5   A0A212FK56   A0A0N1IPW1   A0A2A4K4T4   N6TQL8   A0A194QBB0   H9JC11   E0VQD2   A0A087ZZW3   F4WAC2   A0A2A3EQJ1   A0A1B6GWY4   A0A026WQ21   A0A1B6LBS6   A0A1B6JPQ7   A0A195CU39   A0A0L7R1S1   A0A158NL91   A0A195E4A3   A0A151I1S9   A0A0C9RB81   K7JTX5   A0A154P325   A7S020   A0A1B6CII3   F7CPE2   W5N4I5   Q68BM1   A0A1S3R7K0   A0A210QRH4   A0A232ERZ9   K1RRA8   A0A3P8YQS2   W4YIM3   Q32NU8-2   A0A1L8ERM3   Q32NU8   A0A0K8SPJ1   A0A0A9WKE7   E9IZ16   H2LFB6   V4AU95   F6XJ23   A0A2G8K737   A0A3P9GZW2   E2AQ16   A0A060W2G2   A0A0X3P6K7   F6TBG8   A0A0X3P955   A0A2D0T403   A0A2C9JRJ3   A0A2C9JRK0   A0A1X7UHK0   A0A2C9JRJ4   A0A3B4DE83   F1RBQ8   A0A3M7PSB1   M3XJ02   H3AJE1   Q7ZU45   A0A151PCH1   A0A151PC66   G1KTE2   A0A3B3Q711   A0A3Q3MZH0   A0A3Q0HIJ4   A0A1W5AWJ5   A0A2C9JRJ2   F6T4B2   A0A3N0Y2F9   A0A0K8SPX2   A0A096P5R0   A0A3P8NFY4   H0WQC9   A0A226EPZ8   A0A1D2N735   F6ZC29   A0A093I7T7   A0A3Q1H2G2   A0A384CXH9   A0A337S391   A0A2K6G721  

KEGG

101743608    no KO assigned | (RefSeq) tetratricopeptide repeat protein 25-like

GO

GO:0016021   GO:0005737   GO:0005856   GO:0042995   GO:0020037   GO:0004096   GO:0032474   GO:0060271   GO:0061371   GO:0004113   GO:0016020   GO:0009214   GO:0005515   GO:0005634   GO:0006348   GO:0016573   GO:0006325   GO:0043565   GO:0004672   GO:0048384  

PANTHER

PTHR23040  

Subcellular location

   In addition to ciliary axonemes, also detected in foci, presumably basal bodies, at the apical cell surface.   With evidence from 1 publications.

Length:

593

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00502999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00061

outside

1  -  593

 

 

Pi

277.491812

Theta

208.610646

Tajima's D

1.039497

CLR

0.271377

CSRT

0.667816609169542

Interpretation

Uncertain