Silkworm Genome Informatics Database

Gene

KWMTBOMO03934

Pre Gene Modal

BGIBMGA010146

Annotation

male-specific_lethal_3_[Bombyx_mori]

Location

Bomo_Chr7(-):6772914-6788904 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.068

CDS

ATGGTCTCTACACGGGGGCTACGATATAAATTCACTGAGGGGGAACGAGTCCTGTGCTACGAGCCAGACCCTACTAAAGCCAAGGTGCTTTATGATTCCAAGGTTCTTGAAGTCGTAGAGAGCAAAGACAAACGAGGGCGTAGAACTGTTGAGTATCTAATCCATTTCCAAGGATGGAACTCTTCGTGGGATCGCTGTGTCAGTGAAGACTTCGTTCTCAAAGATACAGAGGAAAATCGACAGCTGCAACGTGATTTAGCTGAAAAATCACAGCTTCAGTTAGGGGCTTACTTGTACCGTCGGGAACGAAAGAAGGGTGGTAGTACAAGCGCCGCCGGGGCGGGGCCCGCCAAGCGCACCCGTCATGGCTTTAGCGACGACGGCTCTTCGACAAGTACCCAGCCAGACGAAGTCGAAACGGCCGACACGGATTCATCGTCTGCTTCGGCTGCCAACTCTCAGCCTCGTTCTCCGCCGCCTAACAATAACCCTCCAGTCGGGAGAGCTCACATCACGTTACCATTCCCTATCAGGGATCGGCTCACGTTCGATTTCCACATAGTGGTGAAACGCGGTCGGCTGTCTAGACTGCCGGCCAGCCCCTGTGTTGTCGAGATCCTAGAGTCGTTCGTGAAATGGTATGCGCGCGCCGGGGCCTGGCACCAGCCGAGGGCGCGGCACGACCCGCCACAAAGGCCAGACCTACAGGACGTCTCATGCAGGTTAAACCTTGTACGTGAAGTCGCGGACGGGATCCGTGTGTACTTCGACTTCATTCTCCGCGGCCATCTCCTCTACAAGCAAGAACTGCATCAGTACCATGAGATCTGCGGGAAATTCATAGACGAGCAAGAAGGTGAGAAACTGAAATATGTGTTTGAAGAAGAAGAATGTCACTCCCAGGACGAGTCCACCGTCGTTTCGGTCGAAGAAGATCTCAAGAGCCCAAAGATACCCGAGTATTCTCACTTGCCGCCGGATCCAACCGACTGCGAAAATAATGAAGAGGAAGAGATCGAAGAAGGTTCTGTAACTATGGAAGAGAACAATCAGGAGGACGAAGAAGTGATGACCGGTGAAAGCGTCGAGAAAGAAACTTCTAAGACTGATTCGGCCGCCGAGGAGACCGTCGCTGATGACGTCAGCGAGGACGGCGCCCCCGCCCCCGCCTCCGCCCCCGCCGGCGCCGCGCGTCGCATCGGAGCCAGGAGGCTTCGTTCTCACAAGTCCGTTGTTTCGCAATCTGAAAACGAGGAGCCGGCACCTTCGACCTCGACTGGCGAACCGAGGACATTCGAAACACTTTCCTCCAGCGTGGGAAGTAGCGGCTCGTCCATGAGCGAAGGTTGGACCCATCCACCGAAAACAGCTCCCGTATCCACCAGCACTCGCACTCCGCTCTCGCTGCTCTTGGAAAAGGTCGCTAAATGGCAAATGATTCCTCGCGACGGCACCGAACACTTGCCGTGCCGCGTCTACGGCGCTATTCATCTTGCCCGCCTCTTTGTGCGATTACCGGACTTTTTAAACGCTTCTCAAATGCCGGACTGCAAGCTGCGGCTCATTGTCAGGCACATTGACATGTTTGTTCAGTATCTGAACGAACACAGCGAGTGGTTCGGCGAATCTTACTACGTGGCAGACAGCATCTCGCGATCTCATTAA

Protein

MVSTRGLRYKFTEGERVLCYEPDPTKAKVLYDSKVLEVVESKDKRGRRTVEYLIHFQGWNSSWDRCVSEDFVLKDTEENRQLQRDLAEKSQLQLGAYLYRRERKKGGSTSAAGAGPAKRTRHGFSDDGSSTSTQPDEVETADTDSSSASAANSQPRSPPPNNNPPVGRAHITLPFPIRDRLTFDFHIVVKRGRLSRLPASPCVVEILESFVKWYARAGAWHQPRARHDPPQRPDLQDVSCRLNLVREVADGIRVYFDFILRGHLLYKQELHQYHEICGKFIDEQEGEKLKYVFEEEECHSQDESTVVSVEEDLKSPKIPEYSHLPPDPTDCENNEEEEIEEGSVTMEENNQEDEEVMTGESVEKETSKTDSAAEETVADDVSEDGAPAPASAPAGAARRIGARRLRSHKSVVSQSENEEPAPSTSTGEPRTFETLSSSVGSSGSSMSEGWTHPPKTAPVSTSTRTPLSLLLEKVAKWQMIPRDGTEHLPCRVYGAIHLARLFVRLPDFLNASQMPDCKLRLIVRHIDMFVQYLNEHSEWFGESYYVADSISRSH

Uniprot

A5JPL9 C0RWX1 H9JKU5 A0A2A4K1P2 A0A2H1W0F6 A0A3S2NWA5 + More
A0A194R0L1

Pubmed

19121390 26354079

EMBL

EF554692 ABQ51916.1 DQ887343 DQ887344 ABK63250.1 BABH01011536 + More
BABH01011537 BABH01011538 NWSH01000258 PCG77946.1 ODYU01005440 SOQ46302.1 RSAL01000049 RVE50424.1 KQ460930 KPJ10785.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000053240

PRIDE

A5JPL9 C0RWX1 H9JKU5

Pfam

PF11717 Tudor-knot + More
PF05712 MRG

Interpro

IPR038217   MRG_C_sf        + More
IPR026541   MRG_dom
IPR000953   Chromo/chromo_shadow_dom
IPR025995   Tudor-knot
IPR008676   MRG
IPR016197   Chromo-like_dom_sf
IPR037921   MSL3

SUPFAM

SSF54160 SSF54160

Gene 3D

1.10.274.30

CDD

cd00024 CHROMO

ProteinModelPortal

A5JPL9 C0RWX1 H9JKU5 A0A2A4K1P2 A0A2H1W0F6 A0A3S2NWA5 + More
A0A194R0L1

PDB

3OA6 E-value=2.15443e-28, Score=314

KEGG

100101215 K18403 male-specific lethal 3 | (RefSeq) Msl3; male-specific lethal 3

GO

GO:0005634 GO:0006355 GO:0006325

PANTHER

PTHR10880 PTHR10880:SF26

Length:

554

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000590000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00363

outside

1 - 554

Pi

278.842089

Theta

179.350785

Tajima's D

1.767989

CLR

0.003696

CSRT

0.84230788460577

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics