Silkworm Genome Informatics Database

Gene

KWMTBOMO03928

Annotation

Chitin_synthase_regulatory_factor_2_[Operophtera_brumata]

Location

Bomo_Chr7(-):6724959-6728284 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.428 Nuclear Reliability : 1.459

CDS

ATGTCCTACCTTGTCACATATTTTAGAATTGAGAAAATTATCAGTACATTTACTCCTTCTGTCCATTCCATTTCTAATGAAAAGATTGAAGAAAGTGAAGAAAATTTAACTGAAAGGAAAAATTCAAGTGAAAATGATCTGGGACAAGTCTTAAATTCTATTGAGAATCAGCTGGGTTTAGCTGCTATAGAAAATGGACATTATGAAGATGGACTCAATCTTCTAAGGTCAGCTGCAAATCGTGATCATGCACCAGCACTGTATAATTTAGGCTTATGTTATGAAATGGGTCTGGGAGTGTCTGTTAATGAGAAAATGGCAATGGAGTTATATAAATCGGCTGCGACATTGCATCATCCAGGCGCTCTATACAACTTGGGTATTTATTACGGCCAGGGTCGAGGTGGGCTTCAGCAAAACTCTGAAACGGCTACGCGTTTGCTCCGTCTTGCCGCCGCTCAAGGCCAGAAAGATGCTGTAGAAGCATTAAAAACGCTCAATTTGAATTCTGTAGAGCCACCAGCCGAAAATCACGCGGACACGCGTATTTTGCTTCATAATTATTCAGCACAAAATAATCTTTACATACCAACGCAGACAACTCTTTTTGTTGACAACTTTAATCATTTGAAACACCAAAACTATAGAGCAACAATGTGCTAG

Protein

MSYLVTYFRIEKIISTFTPSVHSISNEKIEESEENLTERKNSSENDLGQVLNSIENQLGLAAIENGHYEDGLNLLRSAANRDHAPALYNLGLCYEMGLGVSVNEKMAMELYKSAATLHHPGALYNLGIYYGQGRGGLQQNSETATRLLRLAAAQGQKDAVEALKTLNLNSVEPPAENHADTRILLHNYSAQNNLYIPTQTTLFVDNFNHLKHQNYRATMC

Uniprot

A0A0L7LIE9 A0A2W1BRE2 A0A212FAK0 A0A3S2LNG4 A0A194PLB5 A0A2H1WIL4 + More
I4DKI3 I4DMC1 A0A194QZA6 S4P7K3 A0A182SPE4 A0A2M4BN63 A0A2M4BN29 A0A2M4BN13 A0A182JY72 A0A182VQQ2 A0A0J7KYI7 A0A151I872

Pubmed

26227816 28756777 22118469 26354079 22651552 23622113 + More

EMBL

JTDY01000944 KOB75333.1 KZ149942 PZC76881.1 AGBW02009471 OWR50743.1 + More
RSAL01000049 RVE50431.1 KQ459600 KPI94226.1 ODYU01008814 SOQ52742.1 AK401801 BAM18423.1 AK402439 BAM19061.1 KQ460930 KPJ10792.1 GAIX01004554 JAA88006.1 GGFJ01005262 MBW54403.1 GGFJ01005263 MBW54404.1 GGFJ01005261 MBW54402.1 LBMM01002043 KMQ95358.1 KQ978390 KYM94300.1

Proteomes

UP000037510 UP000007151 UP000283053 UP000053268 UP000053240 UP000075901 + More
UP000075881 UP000075920 UP000036403 UP000078542

Pfam

PF08238 Sel1

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR006597   Sel1-like
IPR013783   Ig-like_fold
IPR003599   Ig_sub
IPR036179   Ig-like_dom_sf

SUPFAM

SSF48726 SSF48726

Gene 3D

1.25.40.10 2.60.40.10

ProteinModelPortal

A0A0L7LIE9 A0A2W1BRE2 A0A212FAK0 A0A3S2LNG4 A0A194PLB5 A0A2H1WIL4 + More
I4DKI3 I4DMC1 A0A194QZA6 S4P7K3 A0A182SPE4 A0A2M4BN63 A0A2M4BN29 A0A2M4BN13 A0A182JY72 A0A182VQQ2 A0A0J7KYI7 A0A151I872

PDB

4BWR E-value=0.000417671, Score=100

KEGG

100862780 no KO assigned | (RefSeq) Casp-4, caspase-X; caspase-4

GO

GO:0016021 GO:0005515 GO:0003676 GO:0016020 GO:0006355 GO:0008270 GO:0043565 GO:0004672 GO:0048384

Length:

220

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.10557

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.10694

outside

1 - 220

Pi

234.545499

Theta

203.599063

Tajima's D

0.514078

CLR

4.877952

CSRT

0.524473776311184

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics