Gene

KWMTBOMO03924  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010225

Annotation

peroxisomal_biogenesis_factor_3_[Bombyx_mori]

Location

Bomo_Chr7(+):6672495-6674318      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.922

CDS

ATGTTTTCTAACATCAAAAACTTTTTAAATCGTCATAGAAGAAAGTTCTTTGTGACTGGAGCAGTTGTAGGTGGGCTTTATGTACTCACAAGCTATGCTCAGAAAAAATTAAGAGATTGGCAGGAGAAAGAAGCAAAAAAGTTCTTTGAGATGACTCGCAAAAAACAGCATTTTGAAGGCACTGAGAGAACATGCAACCAAACAATACTTTCACTTTCTAAAATTGTATCTGAAAGTATTTTGAGTTTGCTAAACACAGAGGAGATTGTACAAAAACTGCAAGAGAATCCTGAAGATAAATTGGCACTATGGGAACAATTGAAAATCACAATTTTTACAAGAATTTGTGTTTTAGTCTATGGCCTGTGCATGCTTCAAGTTGCACTCAGAGTTCAATTAAATGTCATTGGTGGTTATCTATATAAAGACTCTGTACAAGAAGGAGATCCAATTGTAGATAGTAACTTACAAACAAAATACCTGTCTCTGTGCCACTATTTTGTAGGACAAGGTATAGAAGACTTGATCAAGAGAATTGAAAAAATTGTTAAAAGAGTTGTAGAACCAGTTTTGCTTAAAAAAAAGATCACTTTACAGGAAGTAGAGCAGATGTTCTGGTCTATTCAAACTATTTTGTGTACTGACACCGTTGAAGGTGATCCTCTAAAAAACATGGTGTATTATTTAATTGGTCACAATGAAATAAATGATTCGAAATTGGATACAATTGTTAAAGAAACAATGGACATTTTAGAAAGTGATGAAGTAATTTCAGTTACAATGTCATCAGTTAGCAGAAGTTTTTCATGTGTCATTGATGAAGTTGCAAATTTATTTGTGACCAAATCGATACCACCAAGTAAGAATCAATTAGAAGTAGAAGATCATGTCATCACAAGTGGAGTATTAAAATTGAAGAGCGAGCCTTTTGTTGATGTGAACAAAGTAGAGATTTACTTTGTTAAATTGTTACCTGTTATCAATGACCTTATTACTAAGAACATGTGCAAAGGTGACAACAACATTCCAGATTTATTAACACAACAGCTAACACTTAATGAAAAGTTGAAGCTATTAGGTGCAAACATTTATGAAGTATTTAGTAATTCATAA

Protein

MFSNIKNFLNRHRRKFFVTGAVVGGLYVLTSYAQKKLRDWQEKEAKKFFEMTRKKQHFEGTERTCNQTILSLSKIVSESILSLLNTEEIVQKLQENPEDKLALWEQLKITIFTRICVLVYGLCMLQVALRVQLNVIGGYLYKDSVQEGDPIVDSNLQTKYLSLCHYFVGQGIEDLIKRIEKIVKRVVEPVLLKKKITLQEVEQMFWSIQTILCTDTVEGDPLKNMVYYLIGHNEINDSKLDTIVKETMDILESDEVISVTMSSVSRSFSCVIDEVANLFVTKSIPPSKNQLEVEDHVITSGVLKLKSEPFVDVNKVEIYFVKLLPVINDLITKNMCKGDNNIPDLLTQQLTLNEKLKLLGANIYEVFSNS

Uniprot

H9JL24   Q2F5N6   A0A1E1WCD5   A0A194R4L0   A0A194PLC0   A0A2W1BW52   + More
A0A2A4J7Q4   A0A0L7LLQ4   S4P8S0   A0A212EVG8   A0A2J7R1Y4   A0A0K8TT58   A0A067R150   A0A1B6CP06   D6WI62   A0A1Y1JYL7   A0A182TEE8   B4L129   E0VLZ5   A0A2M3ZAA9   B0X106   A0A1I8NNP8   A0A1Q3FAI1   A0A2M4BQS4   A0A182LEY5   A0A182UTA0   Q7PR10   A0A2M4CRW1   A0A2M4CS27   A0A2M4BQS7   Q16P32   A0A182QC91   B4LGU5   A0A1A9UG35   A0A182GA89   A0A1W4VB45   A0A1A9ZKF3   A0A084VAQ4   T1HU64   U5EXC5   A0A3B0JTH9   A0A2M4ASI1   A0A2M4ASE8   A0A0A1XEB1   A0A0K8T9J8   A0A224XIM3   A0A0A1WKA4   A0A0A9X500   A0A1B0AQS5   A0A023EX34   A0A1A9WE08   A0A182NRR3   A0A182JW62   D3TNY6   A0A0V0G8T8   A0A0K8VZM4   A0A034W8K7   Q9VUL8   J3JTQ4   A0A1I8N0W9   B4PKE8   B4N520   B4HI57   A0A182T636   B3M731   A0A0L0C0F4   B3NHZ8   T1P8G1   Q2M1A4   B4GUE2   A0A232EUA3   A0A182HSV1   A0A1J1IKM2   B4QKK8   B4IZG3   A0A1L8E3I0   A0A087ZX77   A0A182XHW9   N6UCN4   A0A1L8E3V9   K7ITR7   A0A182P975   A0A0M4F198   A0A182MA46   A0A026W9D6   A0A1W4WL11   A0A2A3EBT7   A0A0N0U518   A0A182FRP4   W8CAC8   A0A336N0L8   A0A336LIW5   A0A151WP20   A0A195ERB8   A0A195DMN6   A0A1B6J9X2   A0A182YHM3   A0A182VWR9   A0A151I7Y7   A0A1A8EK35  

Pubmed

19121390    26354079    28756777    26227816    23622113    22118469    + More
26369729    24845553    18362917    19820115    28004739    17994087    18057021    20566863    20966253    12364791    14747013    17210077    17510324    26483478    24438588    25830018    25401762    26823975    25474469    20353571    25348373    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22516182    25315136    17550304    26108605    15632085    28648823    22936249    23537049    20075255    24508170    30249741    24495485    25244985   

EMBL

BABH01011524    DQ311387    ABD36331.1    GDQN01006533    JAT84521.1    KQ460930    + More
KPJ10796.1    KQ459600    KPI94231.1    KZ149942    PZC76886.1    NWSH01002496    PCG68157.1    JTDY01000606    KOB76488.1    GAIX01009350    JAA83210.1    AGBW02012187    OWR45486.1    NEVH01008202    PNF34845.1    GDAI01000061    JAI17542.1    KK852818    KDR15659.1    GEDC01022118    JAS15180.1    KQ971321    EFA00035.1    GEZM01103135    JAV51537.1    CH933809    EDW18186.1    KRG06061.1    DS235283    EEB14401.1    GGFM01004715    MBW25466.1    DS232250    EDS38398.1    GFDL01010516    JAV24529.1    GGFJ01006294    MBW55435.1    AAAB01008859    EAA08024.4    GGFL01003896    MBW68074.1    GGFL01003897    MBW68075.1    GGFJ01006295    MBW55436.1    CH477797    EAT36113.1    AXCN02000008    CH940647    EDW70560.1    JXUM01008452    KQ560261    KXJ83490.1    ATLV01004135    KE524190    KFB35048.1    ACPB03003462    GANO01000135    JAB59736.1    OUUW01000002    SPP76001.1    GGFK01010410    MBW43731.1    GGFK01010378    MBW43699.1    GBXI01005489    JAD08803.1    GBRD01003986    JAG61835.1    GFTR01005532    JAW10894.1    GBXI01015176    JAC99115.1    GBHO01027797    GDHC01007764    JAG15807.1    JAQ10865.1    JXJN01002025    GBBI01004914    JAC13798.1    EZ423138    ADD19414.1    GECL01001779    JAP04345.1    GDHF01030911    GDHF01022786    GDHF01018410    GDHF01017055    GDHF01007987    GDHF01002788    GDHF01002765    GDHF01000141    JAI21403.1    JAI29528.1    JAI33904.1    JAI35259.1    JAI44327.1    JAI49526.1    JAI49549.1    JAI52173.1    GAKP01007046    JAC51906.1    AE014296    AY051934    AAF49658.1    AAK93358.1    AGB94564.1    BT126611    AEE61575.1    CM000159    EDW94846.1    CH964101    EDW79459.1    CH480815    EDW41553.1    CH902618    EDV40896.1    JRES01001072    KNC25780.1    CH954178    EDV52084.1    KA644927    AFP59556.1    CH379069    EAL30671.1    CH479191    EDW26225.1    NNAY01002149    OXU21933.1    APCN01000366    CVRI01000048    CRK99001.1    CM000363    CM002912    EDX10519.1    KMY99711.1    CH916366    EDV97738.1    GFDF01000784    JAV13300.1    APGK01034655    APGK01034656    APGK01034657    KB740914    ENN78396.1    GFDF01000785    JAV13299.1    CP012525    ALC44670.1    AXCM01004352    KK107321    QOIP01000002    EZA52717.1    RLU25971.1    KZ288309    PBC28669.1    KQ435794    KOX74021.1    GAMC01005871    JAC00685.1    UFQS01001759    UFQT01001759    SSX12236.1    SSX31688.1    UFQS01000027    UFQT01000027    SSW97688.1    SSX18074.1    KQ982892    KYQ49616.1    KQ982021    KYN30424.1    KQ980724    KYN14160.1    GECU01011699    JAS96007.1    KQ978397    KYM94200.1    HAEB01000720    HAEC01016151    SBQ47191.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000218220    UP000037510    UP000007151    + More
UP000235965    UP000027135    UP000007266    UP000075902    UP000009192    UP000009046    UP000002320    UP000095300    UP000075882    UP000075903    UP000007062    UP000008820    UP000075886    UP000008792    UP000078200    UP000069940    UP000249989    UP000192221    UP000092445    UP000030765    UP000015103    UP000268350    UP000092460    UP000091820    UP000075884    UP000075881    UP000000803    UP000095301    UP000002282    UP000007798    UP000001292    UP000075901    UP000007801    UP000037069    UP000008711    UP000001819    UP000008744    UP000215335    UP000075840    UP000183832    UP000000304    UP000001070    UP000005203    UP000076407    UP000019118    UP000002358    UP000075885    UP000092553    UP000075883    UP000053097    UP000279307    UP000192223    UP000242457    UP000053105    UP000069272    UP000075809    UP000078541    UP000078492    UP000076408    UP000075920    UP000078542   

PRIDE

H9JL24    Q2F5N6    Q9VUL8   

Pfam

PF04882   Peroxin-3        + More
PF02953   zf-Tim10_DDP
PF00853   Runt
PF00400   WD40

Interpro

IPR006966   Peroxin-3        + More
IPR035427   Tim10-like_dom_sf       
IPR004217   Tim10-like       
IPR008967   p53-like_TF_DNA-bd       
IPR013524   Runt_dom       
IPR000040   AML1_Runt       
IPR012346   p53/RUNT-type_TF_DNA-bd_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       

SUPFAM

SSF144122   SSF144122        + More
SSF49417   SSF49417       
SSF50978   SSF50978       

Gene 3D

1.10.287.810     2.60.40.720     2.130.10.10    

ProteinModelPortal

H9JL24   Q2F5N6   A0A1E1WCD5   A0A194R4L0   A0A194PLC0   A0A2W1BW52   + More
A0A2A4J7Q4   A0A0L7LLQ4   S4P8S0   A0A212EVG8   A0A2J7R1Y4   A0A0K8TT58   A0A067R150   A0A1B6CP06   D6WI62   A0A1Y1JYL7   A0A182TEE8   B4L129   E0VLZ5   A0A2M3ZAA9   B0X106   A0A1I8NNP8   A0A1Q3FAI1   A0A2M4BQS4   A0A182LEY5   A0A182UTA0   Q7PR10   A0A2M4CRW1   A0A2M4CS27   A0A2M4BQS7   Q16P32   A0A182QC91   B4LGU5   A0A1A9UG35   A0A182GA89   A0A1W4VB45   A0A1A9ZKF3   A0A084VAQ4   T1HU64   U5EXC5   A0A3B0JTH9   A0A2M4ASI1   A0A2M4ASE8   A0A0A1XEB1   A0A0K8T9J8   A0A224XIM3   A0A0A1WKA4   A0A0A9X500   A0A1B0AQS5   A0A023EX34   A0A1A9WE08   A0A182NRR3   A0A182JW62   D3TNY6   A0A0V0G8T8   A0A0K8VZM4   A0A034W8K7   Q9VUL8   J3JTQ4   A0A1I8N0W9   B4PKE8   B4N520   B4HI57   A0A182T636   B3M731   A0A0L0C0F4   B3NHZ8   T1P8G1   Q2M1A4   B4GUE2   A0A232EUA3   A0A182HSV1   A0A1J1IKM2   B4QKK8   B4IZG3   A0A1L8E3I0   A0A087ZX77   A0A182XHW9   N6UCN4   A0A1L8E3V9   K7ITR7   A0A182P975   A0A0M4F198   A0A182MA46   A0A026W9D6   A0A1W4WL11   A0A2A3EBT7   A0A0N0U518   A0A182FRP4   W8CAC8   A0A336N0L8   A0A336LIW5   A0A151WP20   A0A195ERB8   A0A195DMN6   A0A1B6J9X2   A0A182YHM3   A0A182VWR9   A0A151I7Y7   A0A1A8EK35  

PDB

3MK4     E-value=5.91311e-35,     Score=369

KEGG

692959    K13336 peroxin-3 | (RefSeq) peroxisomal biogenesis factor 3

PATHWAY

04146    Peroxisome - Bombyx mori (domestic silkworm)

GO

GO:0007031   GO:0005779   GO:0046872   GO:0005739   GO:0015031   GO:0030674   GO:0045046   GO:2000304   GO:0030497   GO:0005777   GO:0005524   GO:0003700   GO:0003677   GO:0005634   GO:0004170   GO:0006355   GO:0008270   GO:0043565   GO:0016021   GO:0004672   GO:0048384  

PANTHER

PTHR28080   PTHR11950  

Length:

370

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.3486399999999

Exp number, first 60 AAs:

14.75457

Total prob of N-in:

0.65267

POSSIBLE N-term signal

sequence

inside

1  -  15

TMhelix

16  -  33

outside

34  -  370

 

 

Pi

211.51138

Theta

199.269854

Tajima's D

0.192356

CLR

0.872324

CSRT

0.417479126043698

Interpretation

Uncertain