SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03923
Annotation
PREDICTED:_uncharacterized_protein_LOC105388498_[Plutella_xylostella]
Location in the cell
Nuclear   Reliability : 4.096
 

Sequence

CDS
ATGGACAAACTTGAACTTCAATCAACTTGTTTCGAGAATATCAAGACTTTGTGTACAAACTACCGCAAAGATTCTTCGTCTCGAAAAACTGAAGAGTACCTCAACATACGTTTGTCATCTTTGGAAGAACAGTGGAGAGACTTCGAGGCGAGAAATGCCTTATTACTACTGGAACTGGAAGACAAAACTATACATTATTTCTCTGAAGACGTTTACAACAAAACTAAAGAAATGTATCTAGCAACAAAAACAGACATAAACAACAGACTTAAATACTTGAAACAGCAAAAACATAGTGTGAATTTTGATTTAAGTGACATTTCTGTTGACTACACTCAAGACTGCGAGGACGGAAAATCTGAAAAAATACAACAACTTTTAAATAAACAAGAATGCAATTTTAATGCGATTTATCATGCATTGTCTAAAATTGACATCATTAGAACTAGTGAAAAGTGGGAGCTGGAAGATAATTTTAACATTTTAAAATCGAAGTGGGAGTCCATCGACAAACTGCACTGGGAAATTGACTTTCAGCTGAAGGGGTCTAACGATCACTATTACCGCATGTACTCAGATATCGAAGAAAAATATGATGAATTGAGAAAACAACTTCAATCTAAAATTTGGTCGAATGCACACTATCAGCAGTCGACACCGAGAATGGAATTACCTGATTTTTACGGAAACTACAGTAAGTGGATCTCTTTTAAGGATCTGTTTCTCGAAACCATCCATAACAACCCAACAATTAACAAAGCGCAAAAAATGAAACACCTGAAAACCAAATTGAAGGGGGAAGCAGAAAGTCTGGTACAGCATTTATCCGTCTCTGCTGAAAACTACAACTCCTGCTGGGATATTTTAGTGCAACGGTATGATAATCGCCGCCTACAATTTTCATCGTTTTTCAACACAATGATGAGTCTCCCTGTTATACATCAACCCGACGCTAACAATCTCAAGAAAATGCATGACGTCATTAAGGAATGCATGAACGGCATAGCTAACATCGGGCTGGATACGACAACGTGGGATCCAATGATCGTGCATTTAATGTTGCCGAAATTAGATTCAACAACTTTAAATGATTATATGAACGAAATACGAGATCACAGAGAATTACAAAACTTGCAAGATTTTTTATATTTTTTGGAGTGCAAGTTTATGGCATATGAAACTGCAAAATCAACAAAATCTGTAAAAGATACCACTTCCGAAAAAACATCTCATTGGAAACCGGCTAACAACAAACAACCTGTAAAAAAATTTACATATGACTCTAAGAAAACTTATAACTATCACGCTACTTATGGAAAATGCCCGAATTGTAATGGAAATCATGTTTTAATGCAATGTGCTAAATTTATTAACATGGATACTGCACAGCGAAACCACACTGTTGCGAAATTGAAACTCTGCAAAAATTGTCTCTATAGCCACAATAACGAAGAATGTAAATCAGCGAAAACGTGTAAGGAGTGTAACATGAAACATCATACCATGTTGCACAACGTGAACTGGAAAATTCCAGCGAATGGTAAAAATAACTTTGGACAACAAGCCTCCTCTTCTCAGCAACAAGCTTCGAATCACTTATCATCGGATAAAACTGAAATTTTACTAACTACAACTCTACTGAAAATAAAGGCTTATGATGGCACTTATGTAAAACTTAGGGCCCTCTTGGATCAGGGCTCGCAAGTAAACTTAATAACAGAAAATGCTGCTCAGGTATTACGCCTGCCGAGGAAAAGGTTCGCTGCTACCATCTCGGGGGTTGGTTCAGTATCTGGTGATTGCAGGGGTCAACTAAACTTATCTTGTAAATCAATAAACTCTGAATACGACTTCGAAATACAAGCACTTATAATGAAAAAACTTACAAATAACTTACCGAATGCTACTTTCGAAAAATCGAATTGGCCTCATTTGGAAAACTTAAAGCTGGCTGATCCTGACTTCAACATCTCTCGCCCCATCGACTTACTACTGGGTGCCGATGTTTATTCAGACATTATACTCAATGGAGTTTTAAAATACAACGTGCTCCCGACGGAAAATATATTGTGA
Protein
MDKLELQSTCFENIKTLCTNYRKDSSSRKTEEYLNIRLSSLEEQWRDFEARNALLLLELEDKTIHYFSEDVYNKTKEMYLATKTDINNRLKYLKQQKHSVNFDLSDISVDYTQDCEDGKSEKIQQLLNKQECNFNAIYHALSKIDIIRTSEKWELEDNFNILKSKWESIDKLHWEIDFQLKGSNDHYYRMYSDIEEKYDELRKQLQSKIWSNAHYQQSTPRMELPDFYGNYSKWISFKDLFLETIHNNPTINKAQKMKHLKTKLKGEAESLVQHLSVSAENYNSCWDILVQRYDNRRLQFSSFFNTMMSLPVIHQPDANNLKKMHDVIKECMNGIANIGLDTTTWDPMIVHLMLPKLDSTTLNDYMNEIRDHRELQNLQDFLYFLECKFMAYETAKSTKSVKDTTSEKTSHWKPANNKQPVKKFTYDSKKTYNYHATYGKCPNCNGNHVLMQCAKFINMDTAQRNHTVAKLKLCKNCLYSHNNEECKSAKTCKECNMKHHTMLHNVNWKIPANGKNNFGQQASSSQQQASNHLSSDKTEILLTTTLLKIKAYDGTYVKLRALLDQGSQVNLITENAAQVLRLPRKRFAATISGVGSVSGDCRGQLNLSCKSINSEYDFEIQALIMKKLTNNLPNATFEKSNWPHLENLKLADPDFNISRPIDLLLGADVYSDIILNGVLKYNVLPTENIL

Summary

Pfam
PF03564   DUF1759        + More
PF05585   DUF1758
PF17921   Integrase_H2C2
PF00230   MIP
PF12259   Baculo_F
PF05380   Peptidase_A17
PF00665   rve
PF18701   DUF5641
PF00078   RVT_1
PF13843   DDE_Tnp_1_7
Interpro
IPR005312   DUF1759        + More
IPR029060   PIN-like_dom_sf       
IPR008737   Peptidase_asp_put       
IPR001995   Peptidase_A2_cat       
IPR021109   Peptidase_aspartic_dom_sf       
IPR001584   Integrase_cat-core       
IPR000425   MIP       
IPR008042   Retrotrans_Pao       
IPR012337   RNaseH-like_sf       
IPR040676   DUF5641       
IPR023271   Aquaporin-like       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR022048   Envelope_fusion-like       
IPR000477   RT_dom       
IPR029526   PGBD       
IPR001969   Aspartic_peptidase_AS       
IPR001878   Znf_CCHC       
SUPFAM
SSF88723   SSF88723        + More
SSF53098   SSF53098       
SSF81338   SSF81338       
SSF50630   SSF50630       
Gene 3D

Ontologies

Topology

Length:
690
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01124
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00033
outside
1  -  690
 
 

Population Genetic Test Statistics

Pi
331.250787
Theta
188.853094
Tajima's D
2.353785
CLR
1.889563
CSRT
0.933303334833258
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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