Gene

KWMTBOMO03905

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr7(+):6135216-6138660      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon X-element      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.991 Nuclear   Reliability : 1.504

CDS

ATGGAGGTCGACCTTTCCCCCGCCGCCGCGACTGATGGATTCACAGTAGTCCAAAAAGGTAAAAAGCGCGCTGCGGAGGCCCGAGCTCCCGCGGTCGCTAAAGTAAGCAAAGCCGCGAACGCGTCGCGTCCCCGCCCTCCAACCCCCGTCGCTCCCGCTGTCCGTGCCACACCGTCGCCGCGTCCAGTGGCACAACCTAAAACTCAGACCCCTCCCCCGGTAATCCTTCAAGAGAAGGCAGCTTGGGACCGAGTTTCCCTGGCCCTTAAGGCCAAAAATATTAATTTTGTCAGCGCCCGTAATCTCGCCAACGGGATTCAAATAAAAGTAACGACACCCGACGAACATAGGGCCCTCTCAAGTTACCTCCGAAAGGAGCGTATAAGCTTCCACACTTATACGCTCCAGGAGGAGCGCGAACTCCGCGTTGTCATACGTGGAATCCCGAAGGAGCTAGATGCCGATCTCGTCAAGGCTGATCTGATAGAACAAGGCCTACCAGTAAATTCCGTGCACCGCATGCACACCGGCCGCGGTAGGGAGCCATACAATATGGTTCTAGTCGCCCTCCAGCCTACCCCCGAGGTGCAGGAGACCCTACTTAAGCCCGCGCGCCGTGACCCTAAAATCGCGAACTATAATATGGTCAGGAACGACAGGCTCTCTGCTCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCTGCGCTCACTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGCATGGGAAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTGGCTCCGCTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGATATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCAATTCCGTTCCCGTCATGAGGACTGTGGTGGATTGGCACACGCTGGGCATTAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTACCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCAACATTAGATAGATCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTGCGATGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGTGGAAAATCGTACTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCACCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCTCAAAGATCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAGCTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGATGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTTGGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGATTTGATCAAAGACCTACGTCCTCGCAAAGCTCCCGGTTCCGACGGTATATCTAACCGCGTTATTAAACTTCTACCCATCCAACTCATCGTGATGTTAGCATCTATCTTCAATGCCGCTATGGCTAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGAACGTTATCGGCATACACAAACCCGGTAAACCAAAAAATCATCCGACGAGTTACCGCCCGATTAGCCTCCTCATGTCTCTGGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCATCTCATCAAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTGCAAATCACTCATGCGTACAACAGGTGCACCGCCTCACGGAGCACATTCTCGTGGGACTTAACCGACCAAAACCGATCTACACGGGAGCCCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGTCTCGTGCTCATCATACGGGACTTCTTGTCTAACCGCTCTTTTCGATATCGAGTAG

Protein

MEVDLSPAAATDGFTVVQKGKKRAAEARAPAVAKVSKAANASRPRPPTPVAPAVRATPSPRPVAQPKTQTPPPVILQEKAAWDRVSLALKAKNINFVSARNLANGIQIKVTTPDEHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDADLVKADLIEQGLPVNSVHRMHTGRGREPYNMVLVALQPTPEVQETLLKPARRDPKIANYNMVRNDRLSARGGGTVIYYRRALHCVPLDPPALTNIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRAPNSVPVMRTVVDWHTLGISLAESDPPSLPFNPDSTPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLCDDIRELLRAKNASIRAYDRYPTVENRTRMRALQRDVKSRITEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVAMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPLDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPIQLIVMLASIFNAAMANCIFPAVWKEANVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFISSKGILIDEQFGFRANHSCVQQVHRLTEHILVGLNRPKPIYTGALFFDVAKAFDKVWHNVSCSSYGTSCLTALFDIE

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

At least 30 copies of X-element are present in the genome and some elements are polymorphic between different strains.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon X-element

Uniprot

Q9BPQ0   Q93137   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   A0A139WA11   A0A087THU2   A0A087UCW3   A0A023EYS8   K7IN67   A0A1Y1K0C8   X1WVL6   A0A2S2QEE0   A0A2S2PPK8   A0A2S2PEZ9   X1WNI2   A0A2S2NJB5   A0A2S2PJ52   A0A224XB44   A0A224X6Q4   X1WLB2   V5GNF3   A0A087U3K8   A0A2S2N6Q7   A0A2J7R7D0   X1WZH0   A0A087T3W0   A0A1B6C2V8   J9MAC6   A0A2J7PU96   A0A224X6S1   A0A224X6T4   A0A2J7QR37   A0A2J7PBY3   J9KLB1   A0A2J7QY69   A0A2S2NCK2   A0A2J7RE85   J9LFC9   A0A2S2Q383   J9M522   A0A2S2P6S3   A0A224X6U5   A0A224XJI0   A0A2J7PP17   A0A224X7Z3   A0A224XI99   A0A2H8TKI9   A0A023F069   A0A2S2Q2R8   A0A023EZE6   A0A224X6W2   A0A1Y1KFT3   J9LYS0   A0A2S2PA10   A0A2M4CV52   A0A1Y1KFR3   A0A2S2QDN9   A0A232ENU1   X1X0M4   A0A2A4IUM2   A0A2J7Q0S7   A0A2S2P3X8   A0A1Y1MT28   A0A224XIB0   J9LBF1   A0A2J7Q6J2   A0A2S2NPG3   A0A2S2N814   A0A0H3UA66   A0A3S2NJ07   A0A2M4CV42   A0A224XHW8   A0A2J7QB68   A0A0V0G5B6   Q9NBX4   A0A2S2P698   X1WQ25  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
25474469    20075255    28648823    26812285    11405632   

EMBL

AB055391    BAB21761.1    U07847    AAA17752.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    KK115285    KFM64681.1    KK119261    KFM75202.1    GBBI01004395    JAC14317.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    ABLF02042385    GGMS01006359    MBY75562.1    GGMR01018716    MBY31335.1    GGMR01015412    MBY28031.1    ABLF02008153    ABLF02008462    ABLF02008464    GGMR01004661    MBY17280.1    GGMR01016297    MBY28916.1    GFTR01008262    JAW08164.1    GFTR01008279    JAW08147.1    ABLF02042518    ABLF02057746    GALX01005359    JAB63107.1    KK118005    KFM71947.1    GGMR01000226    MBY12845.1    NEVH01006736    PNF36716.1    ABLF02034467    KK113281    KFM59799.1    GEDC01029594    JAS07704.1    ABLF02007779    ABLF02007782    ABLF02050375    NEVH01021205    PNF19912.1    GFTR01008271    JAW08155.1    GFTR01008261    JAW08165.1    NEVH01011985    PNF31054.1    NEVH01027074    PNF13841.1    ABLF02040174    ABLF02040183    ABLF02055266    NEVH01009134    PNF33528.1    GGMR01002322    MBY14941.1    NEVH01005277    PNF39135.1    ABLF02023911    GGMS01002992    MBY72195.1    ABLF02024246    GGMR01012443    MBY25062.1    GFTR01008251    JAW08175.1    GFTR01008257    JAW08169.1    NEVH01023280    PNF18085.1    GFTR01007929    JAW08497.1    GFTR01008256    JAW08170.1    GFXV01002840    MBW14645.1    GBBI01003810    JAC14902.1    GGMS01002786    MBY71989.1    GBBI01004571    JAC14141.1    GFTR01008260    JAW08166.1    GEZM01084970    JAV60359.1    ABLF02041861    GGMR01013409    MBY26028.1    GGFL01004957    MBW69135.1    GEZM01084969    JAV60363.1    GGMS01006655    MBY75858.1    NNAY01003095    OXU19992.1    ABLF02065839    NWSH01007753    PCG62823.1    NEVH01019963    PNF22185.1    GGMR01011511    MBY24130.1    GEZM01021881    JAV88842.1    GFTR01008246    JAW08180.1    ABLF02012739    ABLF02012741    NEVH01017470    PNF24199.1    GGMR01006408    MBY19027.1    GGMR01000676    MBY13295.1    KF280391    AIE77315.1    RSAL01000708    RVE41206.1    GGFL01005012    MBW69190.1    GFTR01008254    JAW08172.1    NEVH01016302    PNF25823.1    GECL01003538    JAP02586.1    AF237761    AAF81411.1    GGMR01012305    MBY24924.1    ABLF02013806    ABLF02016612   

Proteomes

UP000053268    UP000007266    UP000054359    UP000002358    UP000007819    UP000235965    + More
UP000215335    UP000218220    UP000283053   

PRIDE

Q9BPQ0    Q93137    Q9XXW0    Q9NBX4   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF07727   RVT_2
PF03372   Exo_endo_phos
PF04937   DUF659

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR037220   BED_dom       
IPR012337   RNaseH-like_sf       
IPR007021   DUF659       

SUPFAM

SSF56219   SSF56219        + More
SSF140996   SSF140996       
SSF53098   SSF53098       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q9BPQ0   Q93137   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   A0A139WA11   A0A087THU2   A0A087UCW3   A0A023EYS8   K7IN67   A0A1Y1K0C8   X1WVL6   A0A2S2QEE0   A0A2S2PPK8   A0A2S2PEZ9   X1WNI2   A0A2S2NJB5   A0A2S2PJ52   A0A224XB44   A0A224X6Q4   X1WLB2   V5GNF3   A0A087U3K8   A0A2S2N6Q7   A0A2J7R7D0   X1WZH0   A0A087T3W0   A0A1B6C2V8   J9MAC6   A0A2J7PU96   A0A224X6S1   A0A224X6T4   A0A2J7QR37   A0A2J7PBY3   J9KLB1   A0A2J7QY69   A0A2S2NCK2   A0A2J7RE85   J9LFC9   A0A2S2Q383   J9M522   A0A2S2P6S3   A0A224X6U5   A0A224XJI0   A0A2J7PP17   A0A224X7Z3   A0A224XI99   A0A2H8TKI9   A0A023F069   A0A2S2Q2R8   A0A023EZE6   A0A224X6W2   A0A1Y1KFT3   J9LYS0   A0A2S2PA10   A0A2M4CV52   A0A1Y1KFR3   A0A2S2QDN9   A0A232ENU1   X1X0M4   A0A2A4IUM2   A0A2J7Q0S7   A0A2S2P3X8   A0A1Y1MT28   A0A224XIB0   J9LBF1   A0A2J7Q6J2   A0A2S2NPG3   A0A2S2N814   A0A0H3UA66   A0A3S2NJ07   A0A2M4CV42   A0A224XHW8   A0A2J7QB68   A0A0V0G5B6   Q9NBX4   A0A2S2P698   X1WQ25  

KEGG

105841788    no KO assigned | (RefSeq) predicted GPI-anchored protein 58

GO

GO:0003964   GO:0004519   GO:0016021   GO:0006313  

Length:

778

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

9.24702999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00021

outside

1  -  778

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

1.093618

CSRT

0

Interpretation

Uncertain