Gene

KWMTBOMO03897

Pre Gene Modal

BGIBMGA010211

Annotation

PREDICTED:_golgin_subfamily_A_member_5_[Amyelois_transitella]

Location

Bomo_Chr7(+):6012456-6024428      View in EpiBrowser

Full name

Golgin subfamily A member 5      

Alternative Name

Cell proliferation-inducing gene 31 protein
Golgin-84
Protein Ret-II
RET-fused gene 5 protein

Location in the cell

Nuclear   Reliability : 3.538

CDS

ATGGCTTGGTTTGCGGACTTAGCTGGAAAAGCTGAGACACTTCTTAATAATTTAGACGAGCAAACAGGAGCAGCCCTACGCAATCACAATGTTGTGAAGGCACGTAAACAAGAAAACTCCGATTTTATCTTACATCCAGACCCTTCCTGGAACCAAAGAAAAAGGCCAATACCACGAAATTTAAAGAAAATTTCACCCGTTCCCGAGCCACGTTCAAATTACACTCCTGCTCGAAAGATTTCTCCTATACAGAATTTGAATAAATCTCCTGTAAAAGGCAATCAAGAGCCAGTAAGAAATGGAGTTGTAAAAACGAAGAAACCCTTAAAAAAATCTAACCAGTATACCTTGGACAACTGTCCTGATACATTAGTCTGTGATACTAAAGGTAGCAATACTGACCATTTTGGTTTGAGGCAAAGAAGACATAGTTTGCCAGTTGACCTAGAAATAGTAAGTGATGAAGAATGGACGTACAGAATGCAAAATTTGGAAGTTGAAAATGTGATGTTGAAAAATGAACTCAATGTGTTGAATAGAGAAGTCGCAGATTTGCTTGAGAAACTCCGCAAAACACAGGATGGTAATAAAGTAGAGAAAGTAGCTAATGGTCATGCAGAATTCAATAGTATACAAACTGAAATTAAATTGGCTAAGCAAGAAAATAATGATGTTAGTTCTGAAAAAGATTCATTGAGAGCTCAACTGGAACAGATAAAGCGAAAAGTGGATGATTTGGTGAACATTGAAGTTGTTAATCATAAAGAGAGGATTCGGATTTTGGAAAATGAGCTGTGTGCGCAAAAGGATCAAAATACTGAATTAGAAGATAGGATAAAAGAGCTTACAGAAAAAACGAATGAAAAAGAAACGACCCATTTAAAATTAGAATCCGAGTTACGGCATGCACAATCAACCATAACTGAATTACAATACAATTTAGGCAAGTCGAATGCTGAATGCCACAGATTGGAAAAAGATTGGGAGACATATAAAGTAAGAGTGAAAAGTATGTTACACGCCAAAGATGATGAGATTAAATCATTACAAAACGGACTGAATATAAACGAAGAAAGTAAATTTTTGATTGAGCAGTTAGAAAGTGTGAGAGACGAGCGTGATGAGCTCTCCGTGGTGTTAGACCAAGCGAGGTCGGAGCTGGATGAAATGAAACAGCTCGTTGGACAGCTGGAGTCGCGCCACGTGGCCGCCGAGCGCGTCGTCGCCGCGCTGCGAGACGCTCTGAAGGAAGAACGTGCCGCCAGGAATCGAGCAGAATCACAATCTGCAGCTCTATCTAACGAACTAAAAACATTCCAAGAAGAAACAAATCAAACAATATCTAACCTCAGTGATTCTCTGAGGGAGAAAGAAGCCGAACTAACGAGGATGAGAGAATCCTCGACCTCCGTACGCACCAGCGACAGTAGCGCCCTCAACGTCGCCGACTATGACGTCACGCAGGATACCATAGACAACGATAAAATTTACTATCTAACGCAGTCTCTTGTGCAAAAACAAGGGAAAATTGACTCGTTATTGGCTGATAATAACACGCTTAGGATCCAATTAGATAAATTGGAGTCAAAATACAAAGCTGAGTTATCAAAGCAACGCGCGACCAACACTCATAGCGTGGTGCACTTTCAAGACGACTGTCGCGCTCGTTCAAGGAACTACGTGTCCGACTCCAGCGTTGCCACCCTCTCGATGAGGATCGGGCTCCTGATGCGGAGGTATCCTATATTCAGGCTGTTCATCCTGGTGTATATGATTGGATTACATCTATGGGTGTTCACAGTGTTGCTGTCGAATACACCAGATACCTATATCACGAGAGCGATGAAGTCATGA

Protein

MAWFADLAGKAETLLNNLDEQTGAALRNHNVVKARKQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSPVKGNQEPVRNGVVKTKKPLKKSNQYTLDNCPDTLVCDTKGSNTDHFGLRQRRHSLPVDLEIVSDEEWTYRMQNLEVENVMLKNELNVLNREVADLLEKLRKTQDGNKVEKVANGHAEFNSIQTEIKLAKQENNDVSSEKDSLRAQLEQIKRKVDDLVNIEVVNHKERIRILENELCAQKDQNTELEDRIKELTEKTNEKETTHLKLESELRHAQSTITELQYNLGKSNAECHRLEKDWETYKVRVKSMLHAKDDEIKSLQNGLNINEESKFLIEQLESVRDERDELSVVLDQARSELDEMKQLVGQLESRHVAAERVVAALRDALKEERAARNRAESQSAALSNELKTFQEETNQTISNLSDSLREKEAELTRMRESSTSVRTSDSSALNVADYDVTQDTIDNDKIYYLTQSLVQKQGKIDSLLADNNTLRIQLDKLESKYKAELSKQRATNTHSVVHFQDDCRARSRNYVSDSSVATLSMRIGLLMRRYPIFRLFILVYMIGLHLWVFTVLLSNTPDTYITRAMKS

Description

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Subunit

Homodimer. Interacts with RAB1A that has been activated by GTP-binding, and possibly also with OCRL1. Interacts with isoform CASP of CUX1.

Keywords

Acetylation   Alternative splicing   Chromosomal rearrangement   Coiled coil   Complete proteome   Golgi apparatus   Membrane   Methylation   Phosphoprotein   Polymorphism   Reference proteome   Transmembrane   Transmembrane helix  

Feature

chain  Golgin subfamily A member 5
splice variant  In isoform 2.
sequence variant  In dbSNP:rs17128572.

Uniprot

H9JL10   A0A2A4K027   A0A2H1WN89   A0A2A4JZD1   A0A212EVE5   A0A194PLE5   + More
A0A0N0PDA0   C3XR61   A0A067R7F0   A0A0V0G6R5   A0A2J7QQL8   A0A2J7QQM7   V4AXJ3   A0A341AR70   A5D7A5   L8HV06   A0A384AAH5   G1P0S2   A0A2Y9NCT1   H0WYV7   A0A096NJF2   A0A1U7UZG8   I3M428   A0A1S3J8P8   U3ENU1   A0A2U4A0W9   U3D181   A0A2U3ZZZ1   F6U0M8   A0A2K6RYS5   H0UVL9   A0A210Q510   A0A3Q7NUE9   W4YU02   A0A0D9RFQ7   A0A093C7G6   A0A250YKX7   F7GEH2   A0A0P4VMS9   A0A2Y9JTN5   E2QWJ2   G7MZ12   A0A182HE71   A0A2K6P3W3   A8KAL2   A0A2K5ZT44   A0A2K5M8N6   G1S5S9   M3XWV4   A0A2K5TVH1   F6U7C5   A0A2K6EAP7   B4E1D4   Q8TBA6   H2NM29   A0A093FB88   A0A2J8TLV2   A0A2K5KF96   A0A2Y9G8R0   U6CU85   A0A2U3VI65   A0A2R9BM95   K7DI42   G3SJM4   A0A093GS08   A0A091IRC3   A0A0A9XYI4   G1NKD1   A0A2Y9R7F3   L9JZK3   A0A091TIH5   E1C947   A0A2Y9DM50   A0A182P590   A0A087R528   A0A0A9XQV6   K1QB39   G5B2Y2   A0A1B6GEN0   A0A182JYJ3   A0A091PDC3   A0A0L8G2C7   A0A093REK3   W5PUW5   R0JRZ4   A0A091UP14   A0A094L7C8   A0A2A3ECA8   A0A093C0H6   A0A091LHG7   A0A093P9A0  

Pubmed

19121390    22118469    26354079    18563158    24845553    23254933    + More
19393038    22751099    21993624    25243066    28812685    28087693    17495919    27129103    16341006    22002653    26483478    25362486    17431167    25319552    9915833    12508121    15489334    2734021    9443391    12538640    15144186    15592455    15718469    17081983    18669648    21269460    21406692    22223895    24275569    22722832    22398555    25401762    20838655    23385571    15592404    22992520    21993625    20809919   

EMBL

BABH01011459    BABH01011460    NWSH01000329    PCG77376.1    ODYU01009759    SOQ54402.1    + More
PCG77375.1    AGBW02012217    OWR45431.1    KQ459600    KPI94256.1    KQ460317    KPJ16001.1    GG666456    EEN69179.1    KK852894    KDR14209.1    GECL01002672    JAP03452.1    NEVH01012087    PNF30874.1    PNF30873.1    KB200294    ESP02313.1    BC140485    AAI40486.1    JH882982    ELR47686.1    AAPE02040912    AAQR03046190    AAQR03046191    AAQR03046192    AAQR03046193    AAQR03046194    AHZZ02032607    AHZZ02032608    AGTP01100776    GAMQ01006997    GAMP01006523    JAB34854.1    JAB46232.1    GAMR01009783    JAB24149.1    GAMT01008048    GAMS01008018    JAB03813.1    JAB15118.1    AAKN02053401    AAKN02053402    NEDP02004994    OWF43826.1    AAGJ04043352    AAGJ04043353    AQIB01047145    KL234879    KFV08227.1    GFFW01000493    JAV44295.1    GDKW01000100    JAI56495.1    AAEX03005595    CM001259    EHH28121.1    JXUM01131165    JXUM01131166    JXUM01131167    JXUM01131168    JXUM01131169    JXUM01131170    KQ567676    KXJ69330.1    AK293077    BAF85766.1    ADFV01193549    ADFV01193550    ADFV01193551    ADFV01193552    AEYP01037887    AQIA01065874    AQIA01065875    AQIA01065876    AQIA01065877    AQIA01065878    JSUE03040337    JU323005    JU478099    JU478100    AFE66761.1    AFH34903.1    AK303789    BAG64746.1    AF085199    AY644768    AL132987    CH471061    BC023021    X15786    AJ132949    BX248744    ABGA01238759    ABGA01238760    ABGA01238761    KK391560    KFV54967.1    NDHI03003491    PNJ34017.1    HAAF01002454    CCP74280.1    AJFE02118016    AJFE02118017    AJFE02118018    GABC01001971    GABF01008239    GABD01006539    GABE01003390    NBAG03000028    JAA09367.1    JAA13906.1    JAA26561.1    JAA41349.1    PNI97603.1    CABD030093838    CABD030093839    CABD030093840    CABD030093841    KL217073    KFV73103.1    KK500874    KFP11254.1    GBHO01021259    JAG22345.1    KB320925    ELW55813.1    KK474422    KFQ58546.1    AADN05000303    KL226108    KFM08582.1    GBHO01021261    GBHO01021260    GBRD01008791    JAG22343.1    JAG22344.1    JAG57030.1    JH816865    EKC18746.1    JH168155    GEBF01004103    EHB03640.1    JAN99529.1    GECZ01008882    JAS60887.1    KK672198    KFQ05927.1    KQ424423    KOF71024.1    KL442076    KFW94462.1    AMGL01042924    AMGL01042925    KB743257    EOA99891.1    KL409832    KFQ92132.1    KL276861    KFZ66665.1    KZ288309    PBC28671.1    KL454148    KFV07943.1    KK752789    KFP42331.1    KL225497    KFW72981.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000001554    + More
UP000027135    UP000235965    UP000030746    UP000252040    UP000009136    UP000261681    UP000001074    UP000248483    UP000005225    UP000028761    UP000189704    UP000005215    UP000085678    UP000245320    UP000008225    UP000233220    UP000005447    UP000242188    UP000286641    UP000007110    UP000029965    UP000002280    UP000248482    UP000002254    UP000069940    UP000249989    UP000233200    UP000233140    UP000233060    UP000001073    UP000000715    UP000233100    UP000006718    UP000233120    UP000005640    UP000001595    UP000233080    UP000248481    UP000245340    UP000240080    UP000001519    UP000053875    UP000053119    UP000001645    UP000248480    UP000011518    UP000000539    UP000075885    UP000053286    UP000005408    UP000006813    UP000075881    UP000053454    UP000002356    UP000053283    UP000242457    UP000054081   

PRIDE

H9JL10    A8KAL2    B4E1D4    Q8TBA6   

Pfam

PF09787   Golgin_A5

Interpro

IPR019177   Golgin_subfamily_A_member_5       

ProteinModelPortal

H9JL10   A0A2A4K027   A0A2H1WN89   A0A2A4JZD1   A0A212EVE5   A0A194PLE5   + More
A0A0N0PDA0   C3XR61   A0A067R7F0   A0A0V0G6R5   A0A2J7QQL8   A0A2J7QQM7   V4AXJ3   A0A341AR70   A5D7A5   L8HV06   A0A384AAH5   G1P0S2   A0A2Y9NCT1   H0WYV7   A0A096NJF2   A0A1U7UZG8   I3M428   A0A1S3J8P8   U3ENU1   A0A2U4A0W9   U3D181   A0A2U3ZZZ1   F6U0M8   A0A2K6RYS5   H0UVL9   A0A210Q510   A0A3Q7NUE9   W4YU02   A0A0D9RFQ7   A0A093C7G6   A0A250YKX7   F7GEH2   A0A0P4VMS9   A0A2Y9JTN5   E2QWJ2   G7MZ12   A0A182HE71   A0A2K6P3W3   A8KAL2   A0A2K5ZT44   A0A2K5M8N6   G1S5S9   M3XWV4   A0A2K5TVH1   F6U7C5   A0A2K6EAP7   B4E1D4   Q8TBA6   H2NM29   A0A093FB88   A0A2J8TLV2   A0A2K5KF96   A0A2Y9G8R0   U6CU85   A0A2U3VI65   A0A2R9BM95   K7DI42   G3SJM4   A0A093GS08   A0A091IRC3   A0A0A9XYI4   G1NKD1   A0A2Y9R7F3   L9JZK3   A0A091TIH5   E1C947   A0A2Y9DM50   A0A182P590   A0A087R528   A0A0A9XQV6   K1QB39   G5B2Y2   A0A1B6GEN0   A0A182JYJ3   A0A091PDC3   A0A0L8G2C7   A0A093REK3   W5PUW5   R0JRZ4   A0A091UP14   A0A094L7C8   A0A2A3ECA8   A0A093C0H6   A0A091LHG7   A0A093P9A0  

PDB

1I84     E-value=0.00326332,     Score=98

KEGG

101739426    no KO assigned | (RefSeq) golgin subfamily A member 5

GO

GO:0007030   GO:0016021   GO:0000139   GO:0031985   GO:0000301   GO:0042803   GO:0017137   GO:0005801   GO:0048193   GO:0030133   GO:0016020   GO:0005794   GO:0006751   GO:0031515   GO:0006412   GO:0007219   GO:0007275   GO:0004672   GO:0048384  

PANTHER

PTHR13815  

Subcellular location

Golgi apparatus membrane  

Length:

617

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.48521

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00319

outside

1  -  580

TMhelix

581  -  603

inside

604  -  617

 

 

Pi

27.636908

Theta

193.444324

Tajima's D

1.172849

CLR

0.015935

CSRT

0.709714514274286

Interpretation

Uncertain