SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03895
Pre Gene Modal
BGIBMGA010163
Annotation
PREDICTED:_ralA-binding_protein_1_isoform_X2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.294
 

Sequence

CDS
ATGCATCACCTACGTAGCGTGTTTACGAAGGAAAAAGAAGAGAAGGCCAAATTCAAATTTGAATCTAGAGAAAAACTTAAGGACGAGAAAAAAGAAAAGGTAAAGGACAAAGATAAGGAAAAGTCCAAAGAGAAAGAGAAAGAAAAGGTGAAGGAAAAAGACAAAGATAAAAAAGACAAGAAATTGACGAAAATACAGTCAACGGTGACATCAGGTGTTCCTTTTGAAGAAATTTTCACATTGGGAGTTGCGCTCCCTATATTCGGTGTACCACTGCAACAGTCTGTGGAGCGCTCTCGTTGCCATGACGACACCGGTCTACCGCTGGTCGTCCGAGACAGCATCGATTACTTACAGGCACACGGATTAAAATCGAAAGATATATACCGGACCGAACCGGATAAGATAAAGTTTCAACAACTGAGGAAACTGTTCACGGATCGAGGGCCTACATTCCCGTATCACTGGGACGTTCCTGTCGCTTGCGCTATGCTCAAAGCTTTCATCAGTGAACTCCCGGAATCGATACTAACACAAGAGCTGCACGGTCAGTTCGAACAAGCCACCGCTATAGCCGAACCTCAGCGAGAAGCGACGATGACGAACCTCATCAATAAGCTGCCGAACTGTAACCACAATCTGCTGGCTTGGCTGATGAGACATTTCCAACACGTTGTCTCCAATGAGCAGGTGAATCAAGCGAACATACAAACGATAATGGCAGCTATGGGAGCGGCTTTGAATATGTCACTCAATCTGCTGACTTACCTCGTAACGAAATCGGAAAAACTGTTCCCTAACGTCCGACTCACGAAATACGTGCCGCCTCTCCACTCGCTGCCGGCCGACTTCCCCGACTCCGCCGCCGAGATGAGCGCGGAGCTGCGGAAACAAGAATCTCTTCTCAGTCAGATCCACGCGGAGATGCACGCCGGCTTCATAACGGCCGCCAGAGATCAACAACTATGGGAGGCGCAGCGAATTGTAACACAACTCAAGCGTAAACTTCGTTCGGTACAAAAGTCAACGGAGCCTAACGCGGTGCCCACGCAGCAATCATCCGTAGACGAGAAGCAACCGGACGAGGAGACTACGCGAGTGTGCTCGCAGCCGACCGAAGCCGAGAAGCCGGTCCGCGAAGTCGAAAGGCCAGGCCGCGAAGTCGAGAGGCCAGTCCGCGAAGTCGAGAGGCCAGTCCGCGAAGTCGAGAGGCCAGTCCGCGAAGTCGAGAGGCCAATCGACGCGTTCGAGCCCAAGGAATCGCCGCTCGACCAAGACGCGACCTTCGAGGCGGAATTCGAAGACAACTTCGACTTCAAGCCGGACAAAAAAACGACCACAGATGAGACACAAGCTACGGAACCCGTCCAAGATAAACCGAAACTCACCGAGAAAGAACTCAAAGTGCTGCGTCTCGAATTAGAGAACGCTGAATACCTGCAACTGAAGTCGTTGTTGCAAGCGAAGATCAATTCGGAACAATTCGAGATTGTCAAGCTGAGGAGCTACGTCGCTCTGAAGAACAAACAGGAATGCAACCTACAGAATAACAAAGATGCCAAAGAAAACTCCAGCGTCGACGAGCAAGAGTTAAAACAGAGGCTGATGAAAGAAAACGCTTTGCTCGAGCAGAAAAGACTGAATTTGATCAACCAGATCTTTCAAGAGAGGGTCGCGTGCATCCAGCTGAAGATAGAGCTCGCGATGAAAGAGATTCTGTCTAAATCATAA
Protein
MHHLRSVFTKEKEEKAKFKFESREKLKDEKKEKVKDKDKEKSKEKEKEKVKEKDKDKKDKKLTKIQSTVTSGVPFEEIFTLGVALPIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTDRGPTFPYHWDVPVACAMLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLINKLPNCNHNLLAWLMRHFQHVVSNEQVNQANIQTIMAAMGAALNMSLNLLTYLVTKSEKLFPNVRLTKYVPPLHSLPADFPDSAAEMSAELRKQESLLSQIHAEMHAGFITAARDQQLWEAQRIVTQLKRKLRSVQKSTEPNAVPTQQSSVDEKQPDEETTRVCSQPTEAEKPVREVERPGREVERPVREVERPVREVERPVREVERPIDAFEPKESPLDQDATFEAEFEDNFDFKPDKKTTTDETQATEPVQDKPKLTEKELKVLRLELENAEYLQLKSLLQAKINSEQFEIVKLRSYVALKNKQECNLQNNKDAKENSSVDEQELKQRLMKENALLEQKRLNLINQIFQERVACIQLKIELAMKEILSKS

Summary

Pfam
PF00620   RhoGAP
Interpro
IPR039767   RALBP1        + More
IPR008936   Rho_GTPase_activation_prot       
IPR000198   RhoGAP_dom       
SUPFAM
SSF48350   SSF48350       
Gene 3D
PDB
2MBG     E-value=5.83064e-39,     Score=406

Ontologies

Topology

Length:
576
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.75645
Exp number, first 60 AAs:
0
Total prob of N-in:
0.03264
outside
1  -  576
 
 

Population Genetic Test Statistics

Pi
231.032517
Theta
164.449449
Tajima's D
1.125768
CLR
0.024788
CSRT
0.696165191740413
Interpretation
Uncertain
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