Silkworm Genome Informatics Database

Gene

KWMTBOMO03886

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr7(-):5872186-5877624 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.425 Nuclear Reliability : 1.249

CDS

ATGTATTGTTCTCCTAACCCAAAAAAAACTGATGAAAGTGTGGGCGGCAACACGGGCCGCGAAATATCTACGGCACCGTTTAAGGTGCCAACCGTGGCAGCAAAAGCTGTAAGATGCGAGAGCGCACTCTCGATGCGGTCGGGAAGTGCTGCTTCCGTGAGGAGTAGCGCCTCGAGTGACCGAGGGTCGCTCTCGGTAGATGAAATGAATAGTACGATTGTAGGAGGAAGAGCACTCCGCAAACGTAAAACGGCTCCGCGAGCGGCGGCTTCCCGCCCTTCTGACTCCTCGGAGGGGGAACCCGCACCGCCCGCGAAATTCCTCGCCTTAGAGGAAACCACGGCACCAGTCGGTGGTCGCCAGGTGGCAACGGACTCTGCCAGTGCAGAGGTCGAGCGACTCGTCCGCTCCCTCACCGAGGTGGGGTTCGAAGACTCCACAAAACTATTTAGGGTCGCCTCGGATATTGTATCCAGTGTGGCAGCCAAATCGGGCAGGGGTTTTAAGGGCATATACCTGCATGCTCTTAAGTGCTTGGGTGCCACAATTGAAGACTACCTTAACATAGTTACTCACAAGACGAGCGGCGAGAACGAGGAATGCGTGCGACTGCAGAGAGACCAGCTCAAGGCACAAAACGCCGAGCTGCAAAATAATAATCTTGAGCTACGGGCGGAGATCGCGACCCTACACATGCGGGTGGACGAACTCATGGCGGAGATACGTAGCCCGGCTCCACCCGATGTCGAGGAGGTAGCTGAGCTAAAGCGGCGGATCGCCATTTTAGAGGCGCGCAGTTCGCCAGTGGAGCGTGCAAGACCACTGCTCGCACACGAGCGGAGAGCTGGCACCCAGGTCAAGCCCCAGTCTGCCAAACAGAATAAGCAGCCTGCCAAGCACGATCAAACCCAGCCGATCACCCTGGCCAAGCTTCATGTAGCTAAGCAAGCCAAGGCCCAGCAGCCGGTCCCTACCAAGCCACAGCCTGCCGTAGCGCGTACTGGAAGGGACCGAACGAAGAAGAAAGGCGTGAATGCTGCCAAAGTGATGCAGTACCCTCAGCCCTGCCCGCTGCCTCCGGTCCCATCCAGCATGGACGTAGCGTGGACGACAGTGGTAAAGCGGGGACAAAGAAAGACGAAGGAAGGACAAAGAAGCCCTCGGTCTGTCCAGGCAGTTGGCGCTCCCCGCGTAGAGGGTCCAGCGGTGAAGATACGGAAGAACCGTCGAGGAGGAAGATCCGGCAAGACACGCGCTCCGCGGTCGGCTGCAGTTGTTTTAGAATTGCTGCCGGCCGCTAAAGACAAGGGTATCACTTACGAAGAAGTGATGGCCCGGGCGCGTGGTGGCGTGGATATTGACGCCATCGGAGTGGAAGGCGGACTGAAGGTTCGACACACGGCTAACGGCGCTCGTTTGCTCGAATGTCCCGGTGCTGACTCAGGAGCGGTTGCGGACCGACTTATGGCCCGGCTCCGCGAGATCTTGCCTGATCCGGAGGTGGTGAGGATCGACAGGCCTGTCAGAATGGCGGAGATCAAGGTGACGGGCCTGGACGAGTGCGCCACGAAAGAGGAGGTGGCTGCCGCTATCGCATTGCAGGGGAACTGTGCTCTTGCAAACGTCAAGGTGGGGGAGCTTCGGAGTACATATTCCGGAACTCGCTCTGTATGGGCGCGGTGCCCCGTACAGACAGCCACCCTACTGGCTACGCCTGCACAGGGAAAGCCCGCTGACACGCCCGGTAGGCTACGCGTGGGGTGGGTTATTGCCCACGTGCAGTTGCAGGAAGCTCGACCATGGCGATGCCTTCGATGTTTCGGCACCGGGCACGGCCTCGCCAAGTGCTCGTCAGCTGTTGACCGCAGCGGACTATGTTTCCGGTGCGGCCAATCTGGGCACAAGGCCGCTTCCTGCACTGCCGCCATGCCACACTGTGTATTGTGCGACGCGGAGAAGCGGCGGGCCAACCACCGGGTTGGTGGCCCAGCATGTCATTTTACATCTTTCTCATCCAAGAGGAGGAAGGGTAAAATAAATAAAAAGAAACCGGTTGCAAATAAAGCAGCTGGCGAGTCAGTTCCCGCCGCGGTCCTAGAGCCGGAGGGCGGGACGGACGAAGGAGCAATGGACGCGAATTTGAACCACTCCGCCAGGGCGCAGGATCTCCTCGTCCACACCATGGTGGAGTGGTCAATCGATGTTGCCATAGCCGCGGAGCCGTACTTCGTCCCTGCGGACCAGGATGCCTGGATCGGGGACGTCGACGGCTCCGTGGCTATTACTATCAGGCAGGCCGCGGCGTTACCCCCCCTGGTGATGGTGGCCAGGGGATCCGGTTATGTCGCGGCCAGGGTCGACGAAACCGTCGTGATCGGGGTATACTTCTCTCCGAATAGACATCTCGCCGAGTTCGAGCAGTTCCTGGGCGGGCTTGAGGTGTTGGTTCACCGCCTCGGGTCCCGCCCGGTTATCTTAGCGGGAGACCTCAACGCAAAATGGGTGACTTGGGGTTCCCCCCGCTCGGACTCACGCGGCAGGATGCTCTCGGAGTGGGCGATCGCGGCTGGTCTCTGTCTTTTGAACAGAGGTTCGGTCGCGACTTGCGTGCGATGGAACGGCGAATCTCACGTGGACGTGACATTCGCATCTCCGTCCATCGCACGCCGCACACGTGGCTGGCGCGTTCTTGAGGGGGCGGAGACGCTCTCGGACCATCGATACGTCCGATTTGAGCTCTCAGCCTCCTCTCGATCCGCGTCGGCTATGAACGCCCGCGGTGAGGAGGAGCTCCCGCGAAGTGCTCCTCGGTCATTCCCCAGGTGGGCACTGAAGCGCCTGAATAAGGAGCTCCTGGTGGAGGCAGCCACGGTGGCTGCGTGGGCACCCGTGCCTACTAGCCCCGTGGACGTGGAGTCAGAGGCTGACTGGTTCCGGGGAACGATGGGTCGTATTTGTGACTCAGCGATGCCCCGGGTAGGCAGCAGTGCTCCGCGTGGCGGTGCGTACTGGTGGTCGCCCGAAATCGCGCAACTCCGCGAGGAGTGCGTGCGGGCGCGCCGCCGGAGCGCTCGCCATCGCCGCCGCCGCCTTCGCGATGAGGACTTCGCGGAGGTAGCGGACCGGTTGCGCGCCGACTGCCGCCAAAAGCAGGAAGCGTTGCGACTGGCCATCGGTGAGGCCAAATCTCAGGGCATGCAGACTCTCTTGGAGATGCTCGATCAGGATCCCTGGGGGCGCCCGTACCAAACGGTCCGCAAGAAATTGCGGCCGTGGGCGCTCCCAGTGACGGAGCGTCTCCAGCCTCAGCAGCTGCGGGAGATTGTCTCCGGGCTGTTCCCGCAGATGGAGAGGGACTTTGAGCCTCCCTCCATGGGCGCGCCGCCTCGCAGTGACGTGAGCGGTGTTGCTGAGGTGGTCCCTCCGAGCATTTTGGAGGAAGAGATTCATGCGGCCGTGTTGAGGATGCGGAGAAAAGACGCGGCCCCCGGCCCTGACGGTGTTCACGGCCGGGTCTGGGATTTGGCCTTCGGTGCCCTTGGGGACCGGCTCGTGCGGCTCTTTGAAGCCTGCTTCGAGTCGGGACGGTTTCCTAAGCAGTGGAAGACGGGCAGACTCGTCCTTCTGAGGAAGGAGGGGCGCCCCGCAGACTCACCTGCGGGGTACCGCCCCATCGTGTTGCTGGACGAGGCGGGAAAATTGTTGGAGCGAGTTATCGCCGCCCGCATCGTCCGGCACCTGACCGGGACGGGTCCCGATCTGTCGGAGGAACAGTATGGCTTCAGAGAGGGCCGCTCTACTATCGACGCGATTATGCGCGTGCGTGCCCTCTCTGACGAAGCTGTCGCCTGCGGTGGGGTGGCCTTGGCGGTGTCCCTGGATATCGCCAACGCTTTTAACACCTTGCCCTGGTCAGTGATCGCGGGGGCGCTCGAATATCATGGCGTCCCCGCGTACCTCCGCCGACTGATCGGGTCCTATCTCGAGGACAGATCGGTCGTGTGCACCGGACACGGTGGTGCGGTGCTCCGCTTTCCGGTCGAGCGCGGTGTTCCACAGGGGTCGGTCCTTGGCCCTCTCCTGTGGAATATCGGTTACGACTGGGCTCTGAGGAGCGCCCTGCACGGCCCTCTCCCGGGCCTAAGCGTTGTGTGTTACGCGGATGACACGTTGGTCGTGGCCCGGGGGAGGAACTACCAAGAGTCTGCTCGTCTTGCCTGCGCAGGGGTGGCATTCGTCGTCGGTAAGATCCGAAGGCTGGGCCTCGACGTGGCCCTCGAGAAATCCCAGGCCCTGCTGTTTCACAGGGCTGGGAGAGAGCCGCCACCCGGGGCCCACCTGGTGATTGGAGGCGTCCGCGTCGAGGTCGGGGTGACTGGGTTACGGTACCTCGGTCTCGAATTGGACGGTCGTTGGAACTTCCGCGCTCATTTCGAGAAGTTGGCCCCCCGACTGATGGCGACGGCTGGATCGCTGAGTCGGCTCTTGCCAAACGTCGGAGGGCCTGACACGGTGGTGCGCCGCCTCTACGTGGGGGTGGTGCGGTCTATTGCATTATACGGAGCCCCCGTGTGGTGCCGCGCCTTGACTCGCAGAAACGTCGTGGCGCTGCGACGCCCGCAGCGTGCAATCGCAGTCAGGGCGATTCGTGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCGTTCTCGCCGGGACGCCTCCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTATGCGTGGCGTTGTGACCTTCGCGACAGGGGGGAACCACGTCCCGGAGAAGGAGCAATTAGAGCGCGGAGGCTCCAATCTCGGCGGTCTGTGTTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGTCTCCGGACCGTCGAGGCGGTGCGCCCGGTCCTCGCGAAATGGGCGAACCGTGACCAAGGGCGTCTCACCTTCCGGTTGACGCAAATGCTTACCGGCCATGGGTGTTTTGGCCGGTACCTGCATCGCGTTGCCCGGAGGGAACCGACGATGGAGTGTCACCACTGTGACTGCGACGAGGACACGGTCGAGCATACGCTCGCATATTGCCCCGCATGGGTGGAGCAACGCCGTGTCCTTGTCTCGCAAATAGGACCGGACTTGTCGCTGCCGACTGTCGTGGCTACGATGCTCGGCAGCGATGAGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGAACGAGAGAGGGAGAGCTCATCCCTCTCCGCACCTATCCGTCGCCGCCGAGCCGGGGGCCGCAGAAGGGCTTTTGTCCGACTTCGGCCCCTGTAA

Protein

MYCSPNPKKTDESVGGNTGREISTAPFKVPTVAAKAVRCESALSMRSGSAASVRSSASSDRGSLSVDEMNSTIVGGRALRKRKTAPRAAASRPSDSSEGEPAPPAKFLALEETTAPVGGRQVATDSASAEVERLVRSLTEVGFEDSTKLFRVASDIVSSVAAKSGRGFKGIYLHALKCLGATIEDYLNIVTHKTSGENEECVRLQRDQLKAQNAELQNNNLELRAEIATLHMRVDELMAEIRSPAPPDVEEVAELKRRIAILEARSSPVERARPLLAHERRAGTQVKPQSAKQNKQPAKHDQTQPITLAKLHVAKQAKAQQPVPTKPQPAVARTGRDRTKKKGVNAAKVMQYPQPCPLPPVPSSMDVAWTTVVKRGQRKTKEGQRSPRSVQAVGAPRVEGPAVKIRKNRRGGRSGKTRAPRSAAVVLELLPAAKDKGITYEEVMARARGGVDIDAIGVEGGLKVRHTANGARLLECPGADSGAVADRLMARLREILPDPEVVRIDRPVRMAEIKVTGLDECATKEEVAAAIALQGNCALANVKVGELRSTYSGTRSVWARCPVQTATLLATPAQGKPADTPGRLRVGWVIAHVQLQEARPWRCLRCFGTGHGLAKCSSAVDRSGLCFRCGQSGHKAASCTAAMPHCVLCDAEKRRANHRVGGPACHFTSFSSKRRKGKINKKKPVANKAAGESVPAAVLEPEGGTDEGAMDANLNHSARAQDLLVHTMVEWSIDVAIAAEPYFVPADQDAWIGDVDGSVAITIRQAAALPPLVMVARGSGYVAARVDETVVIGVYFSPNRHLAEFEQFLGGLEVLVHRLGSRPVILAGDLNAKWVTWGSPRSDSRGRMLSEWAIAAGLCLLNRGSVATCVRWNGESHVDVTFASPSIARRTRGWRVLEGAETLSDHRYVRFELSASSRSASAMNARGEEELPRSAPRSFPRWALKRLNKELLVEAATVAAWAPVPTSPVDVESEADWFRGTMGRICDSAMPRVGSSAPRGGAYWWSPEIAQLREECVRARRRSARHRRRRLRDEDFAEVADRLRADCRQKQEALRLAIGEAKSQGMQTLLEMLDQDPWGRPYQTVRKKLRPWALPVTERLQPQQLREIVSGLFPQMERDFEPPSMGAPPRSDVSGVAEVVPPSILEEEIHAAVLRMRRKDAAPGPDGVHGRVWDLAFGALGDRLVRLFEACFESGRFPKQWKTGRLVLLRKEGRPADSPAGYRPIVLLDEAGKLLERVIAARIVRHLTGTGPDLSEEQYGFREGRSTIDAIMRVRALSDEAVACGGVALAVSLDIANAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEDRSVVCTGHGGAVLRFPVERGVPQGSVLGPLLWNIGYDWALRSALHGPLPGLSVVCYADDTLVVARGRNYQESARLACAGVAFVVGKIRRLGLDVALEKSQALLFHRAGREPPPGAHLVIGGVRVEVGVTGLRYLGLELDGRWNFRAHFEKLAPRLMATAGSLSRLLPNVGGPDTVVRRLYVGVVRSIALYGAPVWCRALTRRNVVALRRPQRAIAVRAIRGYRTVSFEAACVLAGTPPWDLEAEALAADYAWRCDLRDRGEPRPGEGAIRARRLQSRRSVLEAWSRRLADPSAGLRTVEAVRPVLAKWANRDQGRLTFRLTQMLTGHGCFGRYLHRVARREPTMECHHCDCDEDTVEHTLAYCPAWVEQRRVLVSQIGPDLSLPTVVATMLGSDESWKAMLDFCECTISQKEAAERERESSSLSAPIRRRRAGGRRRAFVRLRPL

Uniprot

A0A0J7KQK3 A0A3S2LNH8 A0A0J7KFH2 A0A0J7N0R3 A0A0J7NFZ0 A0A0J7KRB8 + More
J9KJG8 J9KT61 X1WZ64 X1WJY4 J9KM84 J9LA43 A0A139W940 A0A139W9B3 J9LQQ1 A0A139W939 A0A139WAH4 A0A139WNC9 A0A139WN93 J9KNS1

Pubmed

18362917 19820115

EMBL

LBMM01004272 KMQ92618.1 RSAL01003504 RVE40273.1 LBMM01008278 KMQ89009.1 + More
LBMM01012412 KMQ86235.1 LBMM01005474 KMQ91485.1 LBMM01003988 KMQ92922.1 ABLF02041886 ABLF02009073 ABLF02030702 ABLF02042963 ABLF02011183 ABLF02041884 ABLF02011238 ABLF02018942 ABLF02041885 ABLF02018098 KQ972691 KXZ75806.1 KQ972544 KXZ75869.1 ABLF02030663 ABLF02041312 KXZ75807.1 KQ971388 KYB24913.1 KQ971310 KYB29500.1 KYB29499.1 ABLF02018808

Proteomes

UP000036403 UP000283053 UP000007819 UP000007266

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01421   Reprolysin
PF00098   zf-CCHC
PF00075   RNase_H

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom
IPR024079   MetalloPept_cat_dom_sf
IPR001590   Peptidase_M12B
IPR000663   Natr_peptide
IPR012337   RNaseH-like_sf
IPR002156   RNaseH_domain
IPR036397   RNaseH_sf

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756
SSF53098   SSF53098

Gene 3D

3.60.10.10 3.40.390.10 3.30.420.10

ProteinModelPortal

A0A0J7KQK3 A0A3S2LNH8 A0A0J7KFH2 A0A0J7N0R3 A0A0J7NFZ0 A0A0J7KRB8 + More
J9KJG8 J9KT61 X1WZ64 X1WJY4 J9KM84 J9LA43 A0A139W940 A0A139W9B3 J9LQQ1 A0A139W939 A0A139WAH4 A0A139WNC9 A0A139WN93 J9KNS1

PDB

1WDU E-value=2.98172e-09, Score=154

KEGG

101743524 no KO assigned | (RefSeq) uncharacterized LOC101743524

GO

GO:0008270 GO:0003676 GO:0003964 GO:0016021 GO:0005179 GO:0005576 GO:0004523 GO:0031515 GO:0006412 GO:0007219 GO:0007275 GO:0004672 GO:0048384

Length:

1775

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04633

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00004

outside

1 - 1775

Pi

0

Theta

0

Tajima's D

0

CLR

277.817233

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree