SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03885
Annotation
PREDICTED:_uncharacterized_protein_LOC106113369_[Papilio_xuthus]
Location
Bomo_Chr7(-):5860554-5866434      View in EpiBrowser
Location in the cell
Mitochondrial   Reliability : 1.245 Nuclear   Reliability : 1.526
 

Sequence

CDS
ATGGAAACCAATGAAGATGTCCAGTTTGCAAAGAGTAATACCCCAGGAGGGTACCCGCCAAGCGGGAGAATCCCTCCGTACTACCGACTCGTCGGTAGTGCGCAGCCCCTCGTATTCTGGGGGGGGGGCACAAACTGCACTGAGATAAGGTCCGGGAAGGACGGAGTTAAAAAAGGAGCAGGGTCCGGGAAGGACGTAAGTAGGAAGAACGGGTCCGCGAAGGACGTAGTAGCAGAAGGGTCCGTTAAGGACAGTGAGGGGAGATCGTCCAGAACCACTCTGGTGTCAGATGATAGCATGACCACAGCTGGGTCGGCCCACTCGTCAGCCCGCTCTTCGCCGACACGCAGACAGCGAAAAAGAGTCCTGACGATCAGCAGTGATGAGTTTGGAAGCAGCTCCGGCTCGGATGAAACAGCTACTACTGGTAAATGTGGTGTCAAGCCGCAATCGAAGAGAGGTCGCGGTCGTCCGACGACCACTGGTCAGTACGGTCTGACTGCGGACGAACAGGCGTATCTTAAAGCTCAGCGCTCTGAGATAAAGGATGCCGGTAGCGTGCGTAGTATGCGCGAATTAAGAAGCGCAAAAATCATGGAAGGGAGCTCTAAGAAAGATCCCGAGTGTCGTCTAAAGGAGAGTGCCGCGATGGCTCTGAAGGTATGTAGTAAGCCCGGAAACCTGAAGGGCACGTACCAACGTGTCCTAAAGGAATTGGCGGTGACAATAACGGAAGTCACAGAAGAACTGGCGAACCGCCCCGCGACCGAAGAGATGGAAAAGCTGCGTGCGGTAAACGCCTGTCAGCAGGAAGAGATTTTACAGCTCCGGCAGGAGCTGCAGAAGGTGCACAAGGAGCTGGCGCGCATATCACAGGCATTGACGTTGTCCAATCCAGTCGAAACCCCAGCCCCAGCTTCAACCACAGAGGACCAGGAGGAGTTGCGTGTCCAACGCATTATGCGTGCCGTCGGCACCATGCTTGACGCTCGCATTGCGAGTCTGGAGATGCGGCTACCCCCGGAGCCTCGCATCAGGCCACCCTTAGCGGCGGATAAGCGGAAGAGCTGTGAGAAATCGCCGAATTCTCCTCTCCTCGTTGACGCTACGCTGGAGTCGACAACGGCACAAGCAGCACTACCGTCCACGGTGAACAAGAAGACACGAGGCCCTAGACAAAAGGCCACAGTGTTAGCGCCTCCACCCGAACCGCGTGCCTTCCCTCCGGCTCCAGCTGTCGTGACCGAAAGCTGGTCTACGGTCACCCGTAGGCGCGCTAAGCCGAGAGGGGAGACCGTGAGAACGGCCACAGCCGTTCCACCCACTAGGGTGTCGGAGAAAGTCCCGTCTTCAAAGAAGAGGACAAAGAAGCGGCTCCGAGCTCCGCGTTCTCAGGCTGTGGTATTAAAACTACAGCCTGAAGCGATAAATAGCGGTCTCACATATCGGTTCATCCTTGCGGACGCGAGGGCGAAGCTCGACCTAGAATCGCTGGGTATCCCGCTCCAGAGGATCCGATCCTCTCTGACGGGTGCCAAGGTCCTGGTGGTGGACGGAGACGATCAAGTAGAGAAAGCCAACCTCCTGGCGAGCAAACTGAAAAAGATTCTGCCCGCTGAGGGCGTCGAGGTCTCCAGGCCATTGGTGACTGCAGCGATGCGCATCAGTGGCCTCGACGACTCGATATCGCGTGAAGAAATCGCTGATGAGCTCGCCAAAATTGGGGGGTGTCCACCCGAGATTATCAAGATCGGGGAAATAAAAACCGGTCCAGGCGGGATGGGACAAGTCTTAGTTCGTTGTCCGATCTCAACAGCGGCGAAAATCGCAGCAGTTCCCAAGCTAAGGATTGGCTGGAGCGTGCTCCGCGCTCATTTGCTGGAGGCCAGGAGGCTGCAGTGTTTCCGGTGCCACGAGTTGGGCCACGTGAGCGCTCGTTGCCCGTCGTCGGTCGATCGCAGCCGGGAATGCTACCGATGCGGCCAGGCCGGTCACGTGGCTTCTGGCTGCTCGCTGGCGCCGCGCTGCACTGTTTGTGTCTCCGCCGGCAGACCAGCGGACCACGTTTCCGGGGGCAAGGCCTGTGCCAAGCCCCCGAGACAGAGACAACGTCGGCAGGATCTCGCGTCGCTTGAGGGCGGGAACCTCAATCACTCCGCCAGAGCTCAAGATCTTTTGTTTCAGAGCATGGCGGAAGGGTTGACTCACCTTGCGGTGGTCGCAGAGCCGTACCGGGTCCTTTTGGGTCCCGATTGGGCAGGTGACCTTGACGGCCGGGTTGCCATTGTCAGGCGTGGCTGTGTGGGTGCTCCGCCCGGATTCGACCTCGTTGAAAGGGGTCGCGGCTTCGTCGCCGTCCTCTGGGCCGAGATGATCGTGGTGGGAGTATACTTCTCCCCCAACAGGACGCTCGCCGAGGGCCTCCTCCTTGAGCTCGGTCGCGTCATTGGGAGGTCACATTCCCGTCGGATTCTCGTCCTTGGGGACCTCAATGCCAAGTCATTGGCTTGGGGTTCCTCGAGGACGTGCCCCAGAGGAACGGCGGTGGAGGAGTGGCTGGTCGGAGGCGGCCTCGTTATTCTCAACCGTGGCACGGAACTTACGTGCGTGAGACGATTAGGCGGGTCCGTGGTGGACGTCACGTTCGCATCTCCCGATGTCGCGAGTCGCATCCGTGGTTGGACGGTGATGGTTGGTGAGGAGACGCTTTCCGACCATCGCTACATCCGTTTCAGCATTGCTGTAGCCCCAGAAGTGACATCAACTTCTTTATTCTGCGGCGGCGGAGTGGAGGGTCCTCGTTGGGCCCAGAAGCGCCTCGATGTCGAACGGCTGAATGAGGCGGCTGTCGCTAGCGCGCAATGCGCTTGGCCCATGGGCTCCCCCTACGACCAGCACACTGCCACCCGAGACATTGCACCGGGTGGTCGGGGGTCTATTTCCGGACTCATCCCGAACGGCCTTCATCCCCCTGTAATGGCAACGGCGCAGGTCGCTGACGGCGGAGAGCTGGAAGGTGTGTCCCAGGCGGAATTTGAGGCGGCAGTGGCGAGGATGCGCGTGAAGCGTACAGCACCAGGCCCCGACGGCCTGTCGAGTCGAGCATGGGCTCTCGCTTTAACTGAGGATGGTTTGGGACCTGCACTTCGAAGGCTGTTTAGCAGGTGCCTCCGCGAGGGCAGGTTCCCGGAGCCGTGGCGCACGGGCCGGCTGGTGCTTATCCCGAAGGACGGTCGCCCTAGAGACGAGCCCTCCGGATATCGCCCGATAGTAGTGTTGGACGAGGCCGGTAAGCTCCTTGAGCGTGTGGTTGCCGGGCGTCTTGTTCAGCACCTGGAGAACATTGGGCCGGATCTCGCGTCCAACCAATATGGCTTCCGGAGAGGTCGGTCGACCGTGGACGCGGTCTTACGGGTCCGCGATCTTTCCGACCAGGCGTGCTCTGGGGGAGGTGTACTGTTGGCTGTGTCGATTGATATTGCCAACGCCTTCAACACGATCCCCTGGAGCACGATTGTGGAGTCATTACGGTTTCACCGCGTCCCCACCGGTCTCCGTAATCTGATTGAGGATTATCTCTCAGGGCGGGCGGTGATCTTCCCCGAGCGGAGTGGGTGGGGACGAAAAACAGTGTCGCGTGGGGTTCCACAAGGGTCGGTACTGGGTCCACTCCTTTGGAATATAGGCTTTGACTGGGTCCTCCGCGGGGCTAACCTGCCTGGCGTCGAAGTGGTTTGCTACGCTGACGACACGCTGGTGACGGCTTGCGGAGACGACTACCGGTCAGCAGCCGTCCTGATTGTGGCTGCAGTGGCAACTGTGGTAAGACGAATAAAGAGACTCGGTCTCGAGGTGGCCCTCCAAAAATCCGAAGCAGTGTGCTTCCACGCAGCTCGGAAAGGGCCACCTCAAGGCGCGAATCTCGTAGTCGGGGGTGTCACCATTGCTGTCCAGCCGAAGCTCAAGTATTTGGGCCTCGTGCTGGACAGCAAATGGAGATTCGACCACCATTTTAAAGCGCTGGTTCCGAGGCTCATGGGGGCGGCAGGTGCGCTGACCCGTCTTCTTCCCAACGTCGGAGGATGCAGCGCCGGTACTCGGCGACTGTACCTTGGGGTGGTGCGCAGTATGGCCCTGTACGGTGCTCCCGTGTGGTCGCCCGCACTCTCCGCGAGAAACGCGGCTCTGCTGCTCAGAGCTCAGCGGGCGCTCGCGGTGAGGGTCATCAGGGGGTACCGCACCATCTCTCAAGATGTGGCCTGCGCTCTCGCCGGATCCCTACCCTGGGACCTCGAGGCCGAAATCTTGGCTGCGGTATATCGGCGTAGGGCGCAGGCCTTTAGTCGGGGACGGTCGCCCGGCCCGTCGGCTGTCGGTCGGTGGAAGCGTGCTGCGCGTCATGTAGCATACGCTAAGTGGAGAGAGCGATTGCTGAAGGAACTTGGCCAAACTTCAGCCACCCGCCGTCGCACTCTCGAGGCCCTGGTGCCCGTGCTGGAGGCATGGTCGGATCGGCGTCACGGCGTACTCTCCTTTCACCTTGCGCAGGTCCTCTCGGGACATGGCTGTTTCGGGAGGTACCTGTGGAAGGTCTGCAGGAGAGAGCCACATCCGGGCTGCCACCAGTGCGGGCACCCAGACGATGACGCGCAGCACGCGCTCGAAACGTGCCCGCGTTGGGAGCACTCGCGGCGAGATCTCGTCGCGGTGCTGGGGAGAAACCTCTCCCTGCGGGCTGTCGTCGCCCGCATGTTAGAGGATCAGGGCTCGTGGGAGGCCATGGCCAGGTTTTGTGACCTGGTAATGGCGTCCCGTGAGGCTGAGGAGCGTGAAAGGGAGTGGGATCCCTCTTCAGCACCTCAGCGCAGAAGGCGGGATGGCCGGCGCGGGCGTGAAGCTCCCGCTCAGCCCCCGTAG
Protein
METNEDVQFAKSNTPGGYPPSGRIPPYYRLVGSAQPLVFWGGGTNCTEIRSGKDGVKKGAGSGKDVSRKNGSAKDVVAEGSVKDSEGRSSRTTLVSDDSMTTAGSAHSSARSSPTRRQRKRVLTISSDEFGSSSGSDETATTGKCGVKPQSKRGRGRPTTTGQYGLTADEQAYLKAQRSEIKDAGSVRSMRELRSAKIMEGSSKKDPECRLKESAAMALKVCSKPGNLKGTYQRVLKELAVTITEVTEELANRPATEEMEKLRAVNACQQEEILQLRQELQKVHKELARISQALTLSNPVETPAPASTTEDQEELRVQRIMRAVGTMLDARIASLEMRLPPEPRIRPPLAADKRKSCEKSPNSPLLVDATLESTTAQAALPSTVNKKTRGPRQKATVLAPPPEPRAFPPAPAVVTESWSTVTRRRAKPRGETVRTATAVPPTRVSEKVPSSKKRTKKRLRAPRSQAVVLKLQPEAINSGLTYRFILADARAKLDLESLGIPLQRIRSSLTGAKVLVVDGDDQVEKANLLASKLKKILPAEGVEVSRPLVTAAMRISGLDDSISREEIADELAKIGGCPPEIIKIGEIKTGPGGMGQVLVRCPISTAAKIAAVPKLRIGWSVLRAHLLEARRLQCFRCHELGHVSARCPSSVDRSRECYRCGQAGHVASGCSLAPRCTVCVSAGRPADHVSGGKACAKPPRQRQRRQDLASLEGGNLNHSARAQDLLFQSMAEGLTHLAVVAEPYRVLLGPDWAGDLDGRVAIVRRGCVGAPPGFDLVERGRGFVAVLWAEMIVVGVYFSPNRTLAEGLLLELGRVIGRSHSRRILVLGDLNAKSLAWGSSRTCPRGTAVEEWLVGGGLVILNRGTELTCVRRLGGSVVDVTFASPDVASRIRGWTVMVGEETLSDHRYIRFSIAVAPEVTSTSLFCGGGVEGPRWAQKRLDVERLNEAAVASAQCAWPMGSPYDQHTATRDIAPGGRGSISGLIPNGLHPPVMATAQVADGGELEGVSQAEFEAAVARMRVKRTAPGPDGLSSRAWALALTEDGLGPALRRLFSRCLREGRFPEPWRTGRLVLIPKDGRPRDEPSGYRPIVVLDEAGKLLERVVAGRLVQHLENIGPDLASNQYGFRRGRSTVDAVLRVRDLSDQACSGGGVLLAVSIDIANAFNTIPWSTIVESLRFHRVPTGLRNLIEDYLSGRAVIFPERSGWGRKTVSRGVPQGSVLGPLLWNIGFDWVLRGANLPGVEVVCYADDTLVTACGDDYRSAAVLIVAAVATVVRRIKRLGLEVALQKSEAVCFHAARKGPPQGANLVVGGVTIAVQPKLKYLGLVLDSKWRFDHHFKALVPRLMGAAGALTRLLPNVGGCSAGTRRLYLGVVRSMALYGAPVWSPALSARNAALLLRAQRALAVRVIRGYRTISQDVACALAGSLPWDLEAEILAAVYRRRAQAFSRGRSPGPSAVGRWKRAARHVAYAKWRERLLKELGQTSATRRRTLEALVPVLEAWSDRRHGVLSFHLAQVLSGHGCFGRYLWKVCRREPHPGCHQCGHPDDDAQHALETCPRWEHSRRDLVAVLGRNLSLRAVVARMLEDQGSWEAMARFCDLVMASREAEEREREWDPSSAPQRRRRDGRRGREAPAQPP

Summary

Uniprot
J9KPP8  
EMBL
ABLF02009991    ABLF02009992    ABLF02054952   
Proteomes
UP000007819   
Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
Interpro
IPR000477   RT_dom        + More
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D
3.60.10.10    
ProteinModelPortal
J9KPP8  
PDB
1WDU     E-value=4.9054e-08,     Score=143

Ontologies

KEGG
101741133    no KO assigned | (RefSeq) RNA-directed DNA polymerase from mobile element jockey-like
GO
GO:0003676   GO:0008270   GO:0031515   GO:0006412   GO:0007219   GO:0007275   GO:0016021   GO:0004672   GO:0048384  

Topology

Length:
1638
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.06127
Exp number, first 60 AAs:
0.00137
Total prob of N-in:
0.00009
outside
1  -  1638
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
341.044167
CSRT
0
Interpretation
Uncertain
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