Gene

KWMTBOMO03881  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010205

Annotation

PREDICTED:_vesicle-associated_membrane_protein_2-like_[Papilio_xuthus]

Location

Bomo_Chr7(+):5569979-5580072      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.807 Nuclear   Reliability : 1.171

CDS

ATGAAGAGTCAGTATTCGTGTGAGACAAGGAAAATGGCAGCAGAAGGTGGCAATCCAGGTGGTCTGGCACCAGCAGAGCCCCAGACAGGTCCTGATGGAGAGATTATTGGAGGACCTCGTACACCTCAGCAGATTGCTGCTCAGAGGAGGCTTCAGCAGACACAAGCACAAGTTGATGAGGTGGTGGATATTATGAAGTCGAATGTAGATAAAGTTTTGGACAGGGACGCGAAGTTATCAGAATTGGACTACAGGGCAGATGCTCTTCAGGAAGGGGCATCGCAGTTTGAGAGACAAGCTAAGAGTCTGAAAAACAAATTTTGGTTACAGAATCTAAAGATGATAATAATAATGGGTGTGATTGGTGTTATTATCATAGGGCTGCTATTCGGAAAGTACATGTAA

Protein

MKSQYSCETRKMAAEGGNPGGLAPAEPQTGPDGEIIGGPRTPQQIAAQRRLQQTQAQVDEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQFERQAKSLKNKFWLQNLKMIIIMGVIGVIIIGLLFGKYM

Uniprot

H9JL04   A0A212EZG6   A0A194RPH8   A0A194Q5S3   A0A0L7L7X4   A0A2W1BUG9   + More
A0A2A4J8J8   A0A2H1X1V3   A0A3S2LTB3   A0A1J1IRW0   A0A0A9WWU5   A0A0A9WPG0   E0W1F5   A0A1L8DVG7   T1E1U4   A0A1B0DBZ6   A0A336JXK9   A0A1Q3G578   U5EXV1   A0A1B0CIW1   A0A2P8YPR5   A0A1B6DLT3   A0A182SJS7   A0A1Q3FVI5   A0A067RVI7   A0A1B6E907   A0A182GF13   A0A182Y0X9   A0A0P6IUI5   B0WRV6   A0A1Q3FRM4   A0A0C9S1F2   A0A182J4H7   A0A0C9RMG5   A0A2H1VK35   B0XAS2   A0A1Q3FVI9   A0A2A4K3R5   A0A2A4K214   A0A2J7RF77   A0A2S2P093   A0A3Q0IXP7   A0A194PZJ9   A0A194RK44   F5HSC4   W5JQA4   A0A1B6M4V0   A0A1B6F509   A0A1B6HS35   B4N705   A0A0Q9X2X7  

Pubmed

19121390    22118469    26354079    26227816    28756777    25401762    + More
26823975    20566863    24330624    29403074    24845553    26483478    25244985    26999592    20920257    23761445    17994087   

EMBL

BABH01011423    AGBW02011314    OWR46834.1    KQ460075    KPJ17926.1    KQ459582    + More
KPI98750.1    JTDY01002426    KOB71439.1    KZ149914    PZC78001.1    NWSH01002524    PCG68086.1    ODYU01012811    SOQ59303.1    RSAL01000013    RVE53389.1    CVRI01000057    CRL02292.1    GBHO01034274    GBHO01034272    JAG09330.1    JAG09332.1    GBHO01034273    GBHO01034271    GBRD01012854    GDHC01017411    GDHC01009745    JAG09331.1    JAG09333.1    JAG52972.1    JAQ01218.1    JAQ08884.1    DS235870    EEB19461.1    GFDF01003664    JAV10420.1    GALA01001359    JAA93493.1    AJVK01013865    UFQS01000016    UFQT01000016    SSW97404.1    SSX17790.1    GFDL01000084    JAV34961.1    GANO01000737    JAB59134.1    AJWK01013814    AJWK01013815    AJWK01013816    AJWK01013817    PYGN01000445    PSN46241.1    GEDC01010690    JAS26608.1    GFDL01003448    JAV31597.1    KK852439    KDR23889.1    GEDC01002923    JAS34375.1    JXUM01059063    KQ562033    KXJ76854.1    GDUN01001110    JAN94809.1    DS232061    EDS33521.1    GFDL01004828    JAV30217.1    GBYB01014601    JAG84368.1    GBYB01014602    JAG84369.1    ODYU01002831    SOQ40802.1    DS232594    EDS43861.1    GFDL01003583    JAV31462.1    NWSH01000216    PCG78310.1    PCG78311.1    NEVH01004413    PNF39470.1    GGMR01010274    MBY22893.1    KPI98757.1    KPJ17917.1    AB630175    BAK23255.1    ADMH02000483    ETN66311.1    GEBQ01009028    JAT30949.1    GECZ01024806    JAS44963.1    GECU01030212    JAS77494.1    CH964168    EDW80144.1    KRF99245.1   

Proteomes

UP000005204    UP000007151    UP000053240    UP000053268    UP000037510    UP000218220    + More
UP000283053    UP000183832    UP000009046    UP000092462    UP000092461    UP000245037    UP000075901    UP000027135    UP000069940    UP000249989    UP000076408    UP000002320    UP000075880    UP000235965    UP000079169    UP000000673    UP000007798   

PRIDE

H9JL04   

Pfam

PF00957   Synaptobrevin

Interpro

IPR016444   Synaptobrevin/VAMP        + More
IPR001388   Synaptobrevin       

ProteinModelPortal

H9JL04   A0A212EZG6   A0A194RPH8   A0A194Q5S3   A0A0L7L7X4   A0A2W1BUG9   + More
A0A2A4J8J8   A0A2H1X1V3   A0A3S2LTB3   A0A1J1IRW0   A0A0A9WWU5   A0A0A9WPG0   E0W1F5   A0A1L8DVG7   T1E1U4   A0A1B0DBZ6   A0A336JXK9   A0A1Q3G578   U5EXV1   A0A1B0CIW1   A0A2P8YPR5   A0A1B6DLT3   A0A182SJS7   A0A1Q3FVI5   A0A067RVI7   A0A1B6E907   A0A182GF13   A0A182Y0X9   A0A0P6IUI5   B0WRV6   A0A1Q3FRM4   A0A0C9S1F2   A0A182J4H7   A0A0C9RMG5   A0A2H1VK35   B0XAS2   A0A1Q3FVI9   A0A2A4K3R5   A0A2A4K214   A0A2J7RF77   A0A2S2P093   A0A3Q0IXP7   A0A194PZJ9   A0A194RK44   F5HSC4   W5JQA4   A0A1B6M4V0   A0A1B6F509   A0A1B6HS35   B4N705   A0A0Q9X2X7  

PDB

2KOG     E-value=1.19333e-16,     Score=205

KEGG

101738545    K13504 vesicle-associated membrane protein 2 | (RefSeq) vesicle-associated membrane protein 2-like

PATHWAY

04130    SNARE interactions in vesicular transport - Bombyx mori (domestic silkworm)

GO

GO:0016192   GO:0016021   GO:0016020   GO:0005484   GO:0000149   GO:0031201   GO:0006906   GO:0008021   GO:0043195   GO:0005886   GO:0048786   GO:0005524   GO:0006412   GO:0007219   GO:0007275   GO:0004672   GO:0048384  

Length:

134

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.24734

Exp number, first 60 AAs:

0

Total prob of N-in:

0.94591

inside

1  -  107

TMhelix

108  -  130

outside

131  -  134

 

 

Pi

326.709405

Theta

185.528639

Tajima's D

2.276271

CLR

0.194729

CSRT

0.919154042297885

Interpretation

Uncertain