Gene

KWMTBOMO03880

Pre Gene Modal

BGIBMGA010167

Annotation

PREDICTED:_uncharacterized_protein_LOC106104311_isoform_X2_[Papilio_polytes]

Location

Bomo_Chr7(-):5526005-5527248      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.53 Mitochondrial   Reliability : 1.061

CDS

ATGAGATTTGGAGACCAAAAAGTAGTTCTTGTGCGGGGTCACTACGTGTCATATCTGCCGCTGTGCAGCCGCAACGAGCCAGTGTTTGTGGCGGTGTGCACGCCGCTCGCGATGCCTGAGACCCGCGAGTGCGTGGTGCACGGAGCCACCAACGTCTTCACCACGCTGCACGCCATGGACATGAAGATACTCCACGTTGACGCCAAGTAA

Protein

MRFGDQKVVLVRGHYVSYLPLCSRNEPVFVAVCTPLAMPETRECVVHGATNVFTTLHAMDMKILHVDAK

Uniprot

H9JKW6   A0A2A4JYX7   A0A2A4JZ89   A0A194RJC3   A0A194RJB8   A0A2H1WTZ5   + More
A0A194PZJ3   A0A212EZF4   A0A182UPN1   Q7Q296   A0A084WSY3   A0A2C9GQ93   A0A182KMT1   A0A182H7G4   Q16ZN3   A0A2A4J7M5   A0A182QVV3   A0A1D2MV97   A0A336LNT7   A0A0M4EMM2   A0A0P9CAI5   B3M2U2   B4JGK3   B4LYT7   W8CB52   A0A3B0K8A2   B4K6E4   B4GEF0   Q297A1   A8JRD5   Q2WGN8   B4PSW1   Q9VBH3   A7VJJ6   A0A1W4V9G3   B4ICJ8   A0A1I8PDL8   B4QW30   B4NK46   A0A1W4V932   A0A0K8S4K3   A0A2W1BWK4   Q4V724   Q6RZA5   A8JRD4   B3P696   A0A1A9V373   A0A0L0C3M8   A0A1J1IAG7   A0A1B0A669   T1JAN8   A0A2W1BSF7   E0W404   A0A1B0GF15   A0A1B0BEW1   A0A3S2NKP7   A0A1A9XEX1   A0A182FL57   A0A087UVA0   D6W790   A0A0T6AXE8   A0A139WNU5   E9GWX0   B0WJB8   A0A1Y1MAG6   A0A1Y1MC10   B0WJB7   A0A2P6LE90   A0A182PBY7   A0A0K0PRS7   A0A182VQH9   A0A182XH30   A0A2J7QT23   A0A182U6F1   A0A182RWW0   A0A182N6I7   A0A182XXM7   A0A182MG64   N6TXZ2   U4UJP1   B7QAJ6   A0A2P8Y9L5   H9JL05   A0A132A161   A0A067R1P4   A0A0L7K3W9   A0A0P5G6X8   A0A1V9XQC7   A0A0P5HM88   A0A0P5CSL3   A0A0P6E2T3   A0A0P5EVZ9   A0A0P5WJU8   A0A0P6AX34   A0A0P5YUR4   A0A0P5WL61   A0A0P5SH63   A0A0P5LQ60   A0A0P5TVZ4   A0A0P5BG54  

Pubmed

19121390    26354079    22118469    12364791    14747013    17210077    + More
24438588    20966253    26483478    17510324    27289101    17994087    24495485    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    17628356    28756777    12897136    26108605    20566863    18362917    19820115    21292972    28004739    25244985    23537049    29403074    26555130    24845553    26227816    28327890   

EMBL

BABH01011418    NWSH01000396    PCG76703.1    PCG76702.1    KQ460075    KPJ17928.1    + More
KPJ17923.1    ODYU01010646    SOQ55894.1    KQ459582    KPI98752.1    AGBW02011314    OWR46837.1    AAAB01008978    EAA13592.5    ATLV01026747    ATLV01026748    ATLV01026749    ATLV01026750    ATLV01026751    ATLV01026752    ATLV01026753    ATLV01026754    ATLV01026755    ATLV01026756    KE525419    KFB53327.1    APCN01002696    JXUM01028053    JXUM01028054    KQ560808    KXJ80805.1    CH477487    EAT40125.1    NWSH01002524    PCG68085.1    AXCN02000286    LJIJ01000489    ODM96916.1    UFQT01000022    SSX18017.1    CP012526    ALC46727.1    CH902617    KPU80281.1    EDV43472.2    CH916369    EDV93700.1    CH940650    EDW67014.2    GAMC01005136    JAC01420.1    OUUW01000023    SPP89563.1    CH933806    EDW15217.2    CH479182    EDW33985.1    CM000070    EAL28305.3    AE014297    ABW08776.1    AB095028    BAE53416.1    CM000160    EDW98648.2    AAF56569.4    AB121735    BAF76072.1    CH480828    EDW45094.1    CM000364    EDX14529.1    CH964272    EDW85088.2    GBRD01018152    JAG47675.1    KZ149914    PZC78004.1    BT022132    BT024354    AAY51527.1    ABC86416.1    AY484701    AAR85347.1    ABW08775.1    CH954182    EDV53566.1    JRES01000953    KNC26846.1    CVRI01000047    CRK97277.1    JH432001    PZC77998.1    DS235885    EEB20360.1    CCAG010012731    JXJN01013033    JXJN01013034    RSAL01000013    RVE53391.1    KK121821    KFM81289.1    KQ971307    EFA11395.2    LJIG01022577    KRT79839.1    KYB29669.1    GL732571    EFX76042.1    DS231958    EDS29053.1    GEZM01040383    JAV80876.1    GEZM01040382    JAV80877.1    EDS29052.1    MWRG01000165    PRD36897.1    KP641329    AKQ48971.1    NEVH01011202    PNF31727.1    AXCM01012801    APGK01047172    APGK01047173    APGK01047174    KB741077    ENN74175.1    KB632384    ERL94309.1    ABJB010380971    ABJB010443339    ABJB010448674    ABJB010664685    DS895249    EEC15868.1    PYGN01000785    PSN40834.1    BABH01011442    JXLN01009777    KPM04661.1    KK852771    KDR16886.1    JTDY01013244    KOB52167.1    GDIQ01245422    JAK06303.1    MNPL01005965    OQR75695.1    GDIQ01226132    JAK25593.1    GDIP01166317    JAJ57085.1    GDIQ01069441    JAN25296.1    GDIQ01266413    JAJ85311.1    GDIP01085432    JAM18283.1    GDIP01037193    JAM66522.1    GDIP01053197    JAM50518.1    GDIP01085433    JAM18282.1    GDIP01139772    JAL63942.1    GDIQ01167544    JAK84181.1    GDIP01138770    JAL64944.1    GDIP01185611    JAJ37791.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000075903    + More
UP000007062    UP000030765    UP000075840    UP000075882    UP000069940    UP000249989    UP000008820    UP000075886    UP000094527    UP000092553    UP000007801    UP000001070    UP000008792    UP000268350    UP000009192    UP000008744    UP000001819    UP000000803    UP000002282    UP000192221    UP000001292    UP000095300    UP000000304    UP000007798    UP000008711    UP000078200    UP000037069    UP000183832    UP000092445    UP000009046    UP000092444    UP000092460    UP000283053    UP000092443    UP000069272    UP000054359    UP000007266    UP000000305    UP000002320    UP000075885    UP000075920    UP000076407    UP000235965    UP000075902    UP000075900    UP000075884    UP000076408    UP000075883    UP000019118    UP000030742    UP000001555    UP000245037    UP000027135    UP000037510    UP000192247   

PRIDE

H9JKW6    Q2WGN8    Q9VBH3    Q4V724    H9JL05   

Pfam

PF13426   PAS_9        + More
PF00010   HLH

Interpro

IPR011598   bHLH_dom        + More
IPR000014   PAS       
IPR035965   PAS-like_dom_sf       
IPR036638   HLH_DNA-bd_sf       
IPR001412   aa-tRNA-synth_I_CS       
IPR014010   REJ_dom       

SUPFAM

SSF55785   SSF55785        + More
SSF47459   SSF47459       

CDD

cd00130  PAS
cd00083  HLH

ProteinModelPortal

H9JKW6   A0A2A4JYX7   A0A2A4JZ89   A0A194RJC3   A0A194RJB8   A0A2H1WTZ5   + More
A0A194PZJ3   A0A212EZF4   A0A182UPN1   Q7Q296   A0A084WSY3   A0A2C9GQ93   A0A182KMT1   A0A182H7G4   Q16ZN3   A0A2A4J7M5   A0A182QVV3   A0A1D2MV97   A0A336LNT7   A0A0M4EMM2   A0A0P9CAI5   B3M2U2   B4JGK3   B4LYT7   W8CB52   A0A3B0K8A2   B4K6E4   B4GEF0   Q297A1   A8JRD5   Q2WGN8   B4PSW1   Q9VBH3   A7VJJ6   A0A1W4V9G3   B4ICJ8   A0A1I8PDL8   B4QW30   B4NK46   A0A1W4V932   A0A0K8S4K3   A0A2W1BWK4   Q4V724   Q6RZA5   A8JRD4   B3P696   A0A1A9V373   A0A0L0C3M8   A0A1J1IAG7   A0A1B0A669   T1JAN8   A0A2W1BSF7   E0W404   A0A1B0GF15   A0A1B0BEW1   A0A3S2NKP7   A0A1A9XEX1   A0A182FL57   A0A087UVA0   D6W790   A0A0T6AXE8   A0A139WNU5   E9GWX0   B0WJB8   A0A1Y1MAG6   A0A1Y1MC10   B0WJB7   A0A2P6LE90   A0A182PBY7   A0A0K0PRS7   A0A182VQH9   A0A182XH30   A0A2J7QT23   A0A182U6F1   A0A182RWW0   A0A182N6I7   A0A182XXM7   A0A182MG64   N6TXZ2   U4UJP1   B7QAJ6   A0A2P8Y9L5   H9JL05   A0A132A161   A0A067R1P4   A0A0L7K3W9   A0A0P5G6X8   A0A1V9XQC7   A0A0P5HM88   A0A0P5CSL3   A0A0P6E2T3   A0A0P5EVZ9   A0A0P5WJU8   A0A0P6AX34   A0A0P5YUR4   A0A0P5WL61   A0A0P5SH63   A0A0P5LQ60   A0A0P5TVZ4   A0A0P5BG54  

KEGG

101741083    no KO assigned | (RefSeq) neuronal PAS domain-containing protein 4-like

GO

GO:0005634   GO:0046983   GO:0045944   GO:0006357   GO:0000981   GO:0003700   GO:0007427   GO:0016348   GO:0046982   GO:0032991   GO:0043565   GO:0035147   GO:0006355   GO:0016874   GO:0006418   GO:0004812   GO:0005524  

Subcellular location

Nucleus  

Length:

69

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02699

Exp number, first 60 AAs:

0.02443

Total prob of N-in:

0.31419

outside

1  -  69

 

 

Pi

287.505398

Theta

237.918394

Tajima's D

0.652269

CLR

0.050908

CSRT

0.555122243887806

Interpretation

Uncertain