Gene

KWMTBOMO03876  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010170

Annotation

PREDICTED:_vesicle-associated_membrane_protein_2_[Bombyx_mori]

Location

Bomo_Chr7(-):5428732-5442848      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.055

CDS

ATGCCCGTGGGCGGACCAAAGACGCCCCAGCAGATTGCCGCCCAACGTCGCTTGCAACAAACCCAAGCTCAAGTCGATGAGGTCGTTGATATAATGAAAACAAACGTGGAAAAAGTTCTGGAGCGCGATCAAAAGCTCTCCGAACTTGACGACAGAGCAGATGCACTACAACAAGGCGCTTCACAATTTGAACAGCAAGCCGGCAAGCTTAAGAGCAAATTCTGGCTGCAGAACTTAAAGATGATGATCATCGCAGCCGTGATTGGAATCATCATTCTGGCTCTAATCATTGCCAACTTTGTGTGA

Protein

MPVGGPKTPQQIAAQRRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRADALQQGASQFEQQAGKLKSKFWLQNLKMMIIAAVIGIIILALIIANFV

Uniprot

A0A2W1BSF2   A0A194RK44   A0A194PZJ9   A0A212F133   A0A2A4K214   A0A2A4K3R5   + More
H9JKW9   A0A2H1VK35   E0W1F5   A0A310S9M1   W5JQA4   A0A0M9A8W2   A0A182RN33   T1EAN9   A0A2M3ZK89   A0A232EZ34   Q7PNR9   A0A2M4B079   K7J6E0   A0A0L7RCV3   A0A2M4C3U8   A0A2M4DRZ4   T1DHA1   A0A1B6HFL0   A0A0C9S1F2   A0A1B6M4V0   A0A1B6F509   A0A1B6HS35   T1E1U4   A0A1B6DLT3   A0A182Y0X9   A0A182SJS7   A0A1Q3FVI5   A0A1B6E907   A0A1B6KDV9   A0A0A9WWU5   A0A1B6F772   A0A2P8YPR5   A0A1B6K3U6   A0A336JXK9   A0A0C9RMG5   A0A1Y1KPW4   A0A182FHH7   A0A182U2W5   A0A182WKB2   A0A0P6IUI5   A7UTQ4   A0A158P3D2   A0A182UUM6   A0A182LJJ7   U5EXV1   A0A182MTP8   A0A067RVI7   A0A2M4CSC3   F5HSC4   A0A2C9GQ46   A0A182PM26   A0A1Q3G578   A0A2M3ZK45   A0A2M4AZR5   A0A151IJ66   A0A1L8DVG7   A0A1Q3FVI9   A0A1Q3FRM4   A0A0A9WPG0   A0A1J1IRW0   A0A1B0CIW1   A0A182GF13   A0A182J4H7   A0A182Q857   A0A195EZW4   A0A0K8V3K6   A0A182NM06   A0A0A1WZZ9   T1PEV3   A0A034V5U0   A0A0K8V3H2   A0A151WYW0   V9IAP3   A0A2S2P093   A0A088AMG4   A0A0A1WL23   W8AGG0   T1PE77   A0A034V7G0   A0A0K8WKK4   T1PCF4   A0A195BPV3   A0A0K8U0L0   A0A0A1X7E0   C4WY64   F4X529   T1PCN4   A0A2S2Q819   A0A2H8TM49   W8B2E6   A0A1B0DBZ6   A0A1I8PPP0   A0A0L0BWN4   A0A1A9VJ64  

Pubmed

28756777    26354079    22118469    19121390    20566863    20920257    + More
23761445    28648823    12364791    14747013    17210077    20075255    24330624    25244985    25401762    29403074    28004739    26999592    21347285    20966253    24845553    26823975    26483478    25830018    25348373    24495485    25315136    21719571    26108605   

EMBL

KZ149914    PZC78012.1    KQ460075    KPJ17917.1    KQ459582    KPI98757.1    + More
AGBW02010976    OWR47442.1    NWSH01000216    PCG78311.1    PCG78310.1    BABH01011402    BABH01011403    ODYU01002831    SOQ40802.1    DS235870    EEB19461.1    KQ762882    OAD55370.1    ADMH02000483    ETN66311.1    KQ435711    KOX79610.1    GAMD01000873    JAB00718.1    GGFM01008200    MBW28951.1    NNAY01001558    OXU23603.1    AAAB01008960    EAA11705.5    GGFK01013109    MBW46430.1    KQ414615    KOC68683.1    GGFJ01010804    MBW59945.1    GGFL01016167    MBW80345.1    GALA01001366    JAA93486.1    GECU01034172    JAS73534.1    GBYB01014601    JAG84368.1    GEBQ01009028    JAT30949.1    GECZ01024806    JAS44963.1    GECU01030212    JAS77494.1    GALA01001359    JAA93493.1    GEDC01010690    JAS26608.1    GFDL01003448    JAV31597.1    GEDC01002923    JAS34375.1    GEBQ01030344    JAT09633.1    GBHO01034274    GBHO01034272    JAG09330.1    JAG09332.1    GECZ01023651    JAS46118.1    PYGN01000445    PSN46241.1    GECU01001622    JAT06085.1    UFQS01000016    UFQT01000016    SSW97404.1    SSX17790.1    GBYB01014602    JAG84369.1    GEZM01078797    JAV62618.1    GDUN01001110    JAN94809.1    EDO63676.1    EDO63677.1    ADTU01007643    ADTU01007644    ADTU01007645    GANO01000737    JAB59134.1    AXCM01008263    AXCM01008264    KK852439    KDR23889.1    GGFL01004052    MBW68230.1    AB630175    BAK23255.1    APCN01004314    APCN01004315    APCN01004316    GFDL01000084    JAV34961.1    GGFM01008094    MBW28845.1    GGFK01012970    MBW46291.1    KQ977459    KYN02563.1    GFDF01003664    JAV10420.1    GFDL01003583    JAV31462.1    GFDL01004828    JAV30217.1    GBHO01034273    GBHO01034271    GBRD01012854    GDHC01017411    GDHC01009745    JAG09331.1    JAG09333.1    JAG52972.1    JAQ01218.1    JAQ08884.1    CVRI01000057    CRL02292.1    AJWK01013814    AJWK01013815    AJWK01013816    AJWK01013817    JXUM01059063    KQ562033    KXJ76854.1    AXCN02000943    KQ981905    KYN33452.1    GDHF01018807    JAI33507.1    GBXI01009875    JAD04417.1    KA646443    AFP61072.1    GAKP01021445    JAC37507.1    GDHF01018971    GDHF01004241    JAI33343.1    JAI48073.1    KQ982649    KYQ52976.1    JR037025    JR037027    AEY57536.1    AEY57538.1    GGMR01010274    MBY22893.1    GBXI01014946    JAC99345.1    GAMC01019125    JAB87430.1    KA646445    AFP61074.1    GAKP01021444    JAC37508.1    GDHF01007703    GDHF01000697    JAI44611.1    JAI51617.1    KA646442    AFP61071.1    KQ976432    KYM87524.1    GDHF01032092    JAI20222.1    GBXI01013707    GBXI01007968    GBXI01007240    JAD00585.1    JAD06324.1    JAD07052.1    AK343051    BAH72834.1    GL888680    EGI58486.1    KA646444    AFP61073.1    GGMS01004507    MBY73710.1    GFXV01003442    MBW15247.1    GAMC01019127    GAMC01019126    GAMC01019124    JAB87431.1    AJVK01013865    JRES01001236    KNC24430.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000218220    UP000005204    UP000009046    + More
UP000000673    UP000053105    UP000075900    UP000215335    UP000007062    UP000002358    UP000053825    UP000076408    UP000075901    UP000245037    UP000069272    UP000075902    UP000075920    UP000005205    UP000075903    UP000075882    UP000075883    UP000027135    UP000075840    UP000075885    UP000078542    UP000183832    UP000092461    UP000069940    UP000249989    UP000075880    UP000075886    UP000078541    UP000075884    UP000075809    UP000005203    UP000095301    UP000078540    UP000007755    UP000092462    UP000095300    UP000037069    UP000078200   

PRIDE

H9JKW9   

Pfam

PF00957   Synaptobrevin

Interpro

IPR001388   Synaptobrevin        + More
IPR016444   Synaptobrevin/VAMP       

ProteinModelPortal

A0A2W1BSF2   A0A194RK44   A0A194PZJ9   A0A212F133   A0A2A4K214   A0A2A4K3R5   + More
H9JKW9   A0A2H1VK35   E0W1F5   A0A310S9M1   W5JQA4   A0A0M9A8W2   A0A182RN33   T1EAN9   A0A2M3ZK89   A0A232EZ34   Q7PNR9   A0A2M4B079   K7J6E0   A0A0L7RCV3   A0A2M4C3U8   A0A2M4DRZ4   T1DHA1   A0A1B6HFL0   A0A0C9S1F2   A0A1B6M4V0   A0A1B6F509   A0A1B6HS35   T1E1U4   A0A1B6DLT3   A0A182Y0X9   A0A182SJS7   A0A1Q3FVI5   A0A1B6E907   A0A1B6KDV9   A0A0A9WWU5   A0A1B6F772   A0A2P8YPR5   A0A1B6K3U6   A0A336JXK9   A0A0C9RMG5   A0A1Y1KPW4   A0A182FHH7   A0A182U2W5   A0A182WKB2   A0A0P6IUI5   A7UTQ4   A0A158P3D2   A0A182UUM6   A0A182LJJ7   U5EXV1   A0A182MTP8   A0A067RVI7   A0A2M4CSC3   F5HSC4   A0A2C9GQ46   A0A182PM26   A0A1Q3G578   A0A2M3ZK45   A0A2M4AZR5   A0A151IJ66   A0A1L8DVG7   A0A1Q3FVI9   A0A1Q3FRM4   A0A0A9WPG0   A0A1J1IRW0   A0A1B0CIW1   A0A182GF13   A0A182J4H7   A0A182Q857   A0A195EZW4   A0A0K8V3K6   A0A182NM06   A0A0A1WZZ9   T1PEV3   A0A034V5U0   A0A0K8V3H2   A0A151WYW0   V9IAP3   A0A2S2P093   A0A088AMG4   A0A0A1WL23   W8AGG0   T1PE77   A0A034V7G0   A0A0K8WKK4   T1PCF4   A0A195BPV3   A0A0K8U0L0   A0A0A1X7E0   C4WY64   F4X529   T1PCN4   A0A2S2Q819   A0A2H8TM49   W8B2E6   A0A1B0DBZ6   A0A1I8PPP0   A0A0L0BWN4   A0A1A9VJ64  

PDB

2KOG     E-value=5.7495e-18,     Score=216

KEGG

101737409    K13504 vesicle-associated membrane protein 2 | (RefSeq) vesicle-associated membrane protein 2

PATHWAY

04130    SNARE interactions in vesicular transport - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0016192   GO:0005524   GO:0006412   GO:0007219   GO:0007275   GO:0004672   GO:0048384  

Length:

101

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.35287

Exp number, first 60 AAs:

0

Total prob of N-in:

0.29870

outside

1  -  80

TMhelix

81  -  100

inside

101  -  101

 

 

Pi

340.376964

Theta

174.8117

Tajima's D

2.904918

CLR

0.26837

CSRT

0.976151192440378

Interpretation

Uncertain