Gene

KWMTBOMO03872

Pre Gene Modal

BGIBMGA010172

Annotation

PREDICTED:_nuclear_RNA_export_factor_1-like_[Amyelois_transitella]

Location

Bomo_Chr7(-):5375920-5383778      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.622

CDS

ATGTCCAATATAGAAATTTTATTTAATTGTAAAAGCTCCATAGAGTTATTTGGAAAGTATACTACAGTTGATGAAATTGTTACCAAAGTTGTAAGTAACAGATTTAAAGGAAGCTGTGAATTGGATTTGTCTGCATTTTGTGAAGATAAAGAATTTTTAGAAAATAAAATTTATTTCTACAAGTTGTCGCTTCTATCACATTTCAAAATATTAATGCTAAGAATGGGTAGAGATACAAAATCTTTGAATTTAAGCTGTAACAACTTAAGTAATGCTCCAATGGAAATTCTTAACTTCTTCATGAAAGGAAATTTGACATCCATCAATCTGAGTCACAATAGAATACCATCATTGAACCAAGTACCGAGAGTTAGCAGTAAAATAGAAAAATTATGGATGGAAGAGAATCCATTATGTGAAACACTAGACGCATCGACCTACATAAAAGATATATTGTTTAAGTTCCCAAGATTATTGGAGTTAGACGGCGTCAAATTAAATCACCATCGAACGTACTTACCGTCGATAAGGAACTTCGTAGTGCCAGCCGCATTGCACTCAAACCATGCTATTGACGAGTTCTTGGCCATATTCTTTTCATACTACGACGACCCGTTCCGACATAATCGCAAATATTTAGCGAATCTTTATGACGTTGAAGCGAAATTCAGTATCAGCACTTGTTTTACTTCAAGAGAACAGAGAGATCTTCCACATTACATGAACCATTCGTGGAACATTATGGACATGTCAATGCAAGCCTGCAGTTCGCCGGGCGCTAGGATCTACAACGGTGAAGCTGTACTGGCGATCCTTACAAGCCTGCCCGAAACGATACACGACCCGACAACTTTCTCGATTGATGTTTTACTTCATAATGAAAAAACTTTAGTACTGGTTGTGGATGGTGTTTTTAAAGAGAAATCAATAACAGGACAAGATAAAATTCTACAATTCAGACGAACATTCGTGTTTACGTGTAGAAAGGAGAAAGAAGGTACTAAATATCTCATCGCCAATGATATGTTAACTGTGACAACAGCTGCGAATGAACACAAACTAAACAGTTTTAAGAATCCTATAAGGAACGGCAATACATTAATGCTCATTCATCCAACAGCTGATGATGTGGACAATTTAGTGAACATATTTTGTCGATTGACTAAGCTTAAAGCGTGGGCAGCCAAAGAACGTCTTCGAGCCTGTAACTGGGACATCAGAAAAAGCCTGTCAATATTTATAGACGATTTAAAAAAAAATGACGTCCCGAATTTTTTTCTTGAATTTGATGAACGCCATGCGCTCGGTGTAACAGCATCAATGGAGGAAATTGACTAA

Protein

MSNIEILFNCKSSIELFGKYTTVDEIVTKVVSNRFKGSCELDLSAFCEDKEFLENKIYFYKLSLLSHFKILMLRMGRDTKSLNLSCNNLSNAPMEILNFFMKGNLTSINLSHNRIPSLNQVPRVSSKIEKLWMEENPLCETLDASTYIKDILFKFPRLLELDGVKLNHHRTYLPSIRNFVVPAALHSNHAIDEFLAIFFSYYDDPFRHNRKYLANLYDVEAKFSISTCFTSREQRDLPHYMNHSWNIMDMSMQACSSPGARIYNGEAVLAILTSLPETIHDPTTFSIDVLLHNEKTLVLVVDGVFKEKSITGQDKILQFRRTFVFTCRKEKEGTKYLIANDMLTVTTAANEHKLNSFKNPIRNGNTLMLIHPTADDVDNLVNIFCRLTKLKAWAAKERLRACNWDIRKSLSIFIDDLKKNDVPNFFLEFDERHALGVTASMEEID

Uniprot

A0A2A4K3Q5   A0A2H1X0L0   A0A3S2M7Q4   A0A194PZK4   S4NQJ6   A0A194RK39   + More
D1ZZZ3   A0A1Y1M921   A0A0T6B431   A0A2J7QFV7   D1ZZZ2   A0A067R9M2   A0A0A1XB51   H0XJG4   H0XM04   A0A034WC72   A0A0A1XJM5   A0A3B4DAV9   A0A0K8VIE8   A0A1W4XMG9   G1R7L6   A0A0L0C220   A0A2H1V3Z6   A0A1W4XNB5   U5EWM0   A0A1I8MGK3   A0A3P8V4I5   A0A3P8V9A9   G7Q3A7   Q4R4D1   D2HS72   A0A2D0RL00   A0A1L8GJT6   A0A2K5VQQ6   A4UZ09   A0A2K5VQI1   A0A2D0RJB4   A0A0D9RB38   W8CBH5   C0HAN0   W8BKC8   A0A060WEA2   A0A2K6NAN4   E2B0I6   A0A3B4D6U6   A0A2K6NAP3   M3WLB4   A0A1S3RHV0   S4PL34   L5KRM8   J9NV67   A0A2I3N351   A0A384DFG3   A0A3Q7TYJ0   A0A2U3XG34   A0A2Y9GPT0   A0A2J7R106   A0A2U3WWN5   F6S7D4   A0A3Q7PL55   W5KE75   A0A096NAA8   A0A3Q7U5E5   A0A3B3CFW0   A0A3S2MHK8   A0A212EIB5   A0A3B1JXQ8   A0A3B3DSA4   G3VFP4   A0A3B3CG60   A0A2K6GE52   A0A1B6E176   A0A293MX98   A0A0M9A8J8   A0A340XPR3   A0A3Q0T2M0   A0A2A3EM05   A0A340XL97   I3M4B1   G3UBE9   A0A2W1BX74   A0A1U7UBX7   A0A1W4YWK7  

Pubmed

26354079    23622113    18362917    19820115    28004739    24845553    + More
25830018    25348373    26108605    25315136    24487278    22002653    15944441    20010809    27762356    24495485    20433749    24755649    25362486    20798317    17975172    23258410    16341006    24813606    19892987    25329095    29451363    22118469    21709235    28756777   

EMBL

NWSH01000216    PCG78300.1    ODYU01012499    SOQ58843.1    RSAL01000013    RVE53373.1    + More
KQ459582    KPI98762.1    GAIX01013226    JAA79334.1    KQ460075    KPJ17912.1    KQ971338    EFA02444.1    GEZM01038763    JAV81518.1    LJIG01016092    KRT81639.1    NEVH01014838    PNF27486.1    EFA01773.2    KK852655    KDR19314.1    GBXI01005723    JAD08569.1    AAQR03191804    AAQR03191805    AAQR03191806    AAQR03191807    GAKP01007252    JAC51700.1    GBXI01003202    JAD11090.1    GDHF01013671    JAI38643.1    ADFV01095120    JRES01000997    KNC26297.1    ODYU01000386    SOQ35082.1    GANO01000503    JAB59368.1    CM001296    EHH61086.1    AB178983    BAE02034.1    GL193267    EFB28149.1    CM004472    OCT84102.1    AQIA01086238    AQIA01086239    AQIA01086240    AQIA01086241    AQIA01086242    AB302133    BAF57209.1    AQIB01151968    GAMC01004786    JAC01770.1    BT059386    ACN11099.1    GAMC01004785    JAC01771.1    FR904444    CDQ63564.1    GL444608    EFN60828.1    AANG04000779    GAIX01004240    JAA88320.1    KB030625    ELK13428.1    AAEX03011662    AAEX03011663    NEVH01008214    PNF34518.1    CM012446    RVE67357.1    AGBW02014677    OWR41211.1    AEFK01231450    GEDC01005629    JAS31669.1    GFWV01019800    MAA44528.1    KQ435720    KOX78666.1    KZ288222    PBC32071.1    AGTP01066697    KZ149919    PZC77797.1   

Proteomes

UP000218220    UP000283053    UP000053268    UP000053240    UP000007266    UP000235965    + More
UP000027135    UP000005225    UP000261440    UP000192223    UP000001073    UP000037069    UP000095301    UP000265120    UP000009130    UP000221080    UP000186698    UP000233100    UP000029965    UP000087266    UP000193380    UP000233200    UP000000311    UP000011712    UP000010552    UP000002254    UP000028761    UP000261680    UP000291021    UP000286640    UP000245341    UP000248481    UP000245340    UP000002281    UP000286641    UP000018467    UP000286642    UP000261560    UP000007151    UP000007648    UP000233160    UP000053105    UP000265300    UP000261340    UP000242457    UP000005215    UP000007646    UP000189704    UP000192224   

Pfam

PF03943   TAP_C        + More
PF09162   Tap-RNA_bind
PF02136   NTF2
PF12799   LRR_4
PF13516   LRR_6

Interpro

IPR032710   NTF2-like_dom_sf        + More
IPR032675   LRR_dom_sf       
IPR018222   Nuclear_transport_factor_2_euk       
IPR001611   Leu-rich_rpt       
IPR030217   NXF_fam       
IPR009060   UBA-like_sf       
IPR035979   RBD_domain_sf       
IPR005637   TAP_C_dom       
IPR002075   NTF2       
IPR015245   Tap_RNA-bd       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR030218   NXF5       
IPR025875   Leu-rich_rpt_4       

SUPFAM

SSF54427   SSF54427        + More
SSF46934   SSF46934       
SSF54928   SSF54928       

Gene 3D

3.80.10.10     3.30.70.330    

CDD

cd14342  UBA_TAP-C
cd00780  NTF2

ProteinModelPortal

A0A2A4K3Q5   A0A2H1X0L0   A0A3S2M7Q4   A0A194PZK4   S4NQJ6   A0A194RK39   + More
D1ZZZ3   A0A1Y1M921   A0A0T6B431   A0A2J7QFV7   D1ZZZ2   A0A067R9M2   A0A0A1XB51   H0XJG4   H0XM04   A0A034WC72   A0A0A1XJM5   A0A3B4DAV9   A0A0K8VIE8   A0A1W4XMG9   G1R7L6   A0A0L0C220   A0A2H1V3Z6   A0A1W4XNB5   U5EWM0   A0A1I8MGK3   A0A3P8V4I5   A0A3P8V9A9   G7Q3A7   Q4R4D1   D2HS72   A0A2D0RL00   A0A1L8GJT6   A0A2K5VQQ6   A4UZ09   A0A2K5VQI1   A0A2D0RJB4   A0A0D9RB38   W8CBH5   C0HAN0   W8BKC8   A0A060WEA2   A0A2K6NAN4   E2B0I6   A0A3B4D6U6   A0A2K6NAP3   M3WLB4   A0A1S3RHV0   S4PL34   L5KRM8   J9NV67   A0A2I3N351   A0A384DFG3   A0A3Q7TYJ0   A0A2U3XG34   A0A2Y9GPT0   A0A2J7R106   A0A2U3WWN5   F6S7D4   A0A3Q7PL55   W5KE75   A0A096NAA8   A0A3Q7U5E5   A0A3B3CFW0   A0A3S2MHK8   A0A212EIB5   A0A3B1JXQ8   A0A3B3DSA4   G3VFP4   A0A3B3CG60   A0A2K6GE52   A0A1B6E176   A0A293MX98   A0A0M9A8J8   A0A340XPR3   A0A3Q0T2M0   A0A2A3EM05   A0A340XL97   I3M4B1   G3UBE9   A0A2W1BX74   A0A1U7UBX7   A0A1W4YWK7  

PDB

6E5U     E-value=2.02759e-19,     Score=236

KEGG

101736857    K14284 nuclear RNA export factor | (RefSeq) nuclear RNA export factor 1-like

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)
03013    RNA transport - Bombyx mori (domestic silkworm)
03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0005634   GO:0016973   GO:0003723   GO:0005737   GO:0006406   GO:0051028   GO:0042405   GO:0016607   GO:0003729   GO:0005643   GO:0000346   GO:0005515   GO:0006352   GO:0046982   GO:0006412   GO:0007219   GO:0007275   GO:0016021   GO:0004672   GO:0048384  

PANTHER

PTHR10662   PTHR10662:SF15  

Length:

445

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02385

Exp number, first 60 AAs:

0.00246

Total prob of N-in:

0.00314

outside

1  -  445

 

 

Pi

316.549861

Theta

184.817055

Tajima's D

2.377365

CLR

0.478878

CSRT

0.929053547322634

Interpretation

Uncertain