Gene

KWMTBOMO03871

Pre Gene Modal

BGIBMGA010172

Annotation

transcription_initiation_factor_TFIID_subunit_12_[Bombyx_mori]

Location

Bomo_Chr7(-):5371507-5373488      View in EpiBrowser

Full name

Transcription initiation factor TFIID subunit 12      

Alternative Name

TAFII30 alpha
Transcription initiation factor TFIID 28-alpha kDa/22 kDa subunits
p28-alpha/p22

Location in the cell

Nuclear   Reliability : 3.391

CDS

ATGTCCAATAATTCTCTAGCACAAGCAGCAAATATGCCTACAATAGGGACTGTTGGTCAAGGCGCTATACAATACGTTAATAATCCCATGCAAAGTCCTCAACTTCAAAACACTTCTATTCAAGGTTCTCCTTCTCAACACAGCCCTATGGGGACCCAGTCACAAGTAGCAAAAGTTGGCCAAGGCGGAGCTGGTGACCAGTCATCTCAGCTTCTAAGCCGTCCTCGTCTTCAAGAATTAGTTAGAGAAGTGGACCCAACAGTGCAGCTCGATGAAGAAGTGGAGGAAATGTTACTGCAGCTTGCAGATGACTTCATCGACACTACACTGAATTCAGCTTGCGCTCTTGCTAAGCACAGGCATGCACCAAATGTAGAACTGAGAGATGTGCAGCTACATTTAGAACGTCAGTGGAACATGTGGATACCAGGTTTTGGAAACGATGAACTGCGGCCATACAAGAGAGCAGCAGTTACAGAAGCGCACAGACAACGGATGGCACTCATCCGGAAATCGATAAAAAAATATTAG

Protein

MSNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDELRPYKRAAVTEAHRQRMALIRKSIKKY

Subunit

Belongs to the TFIID complex which is composed of TATA binding protein (Tbp) and a number of TBP-associated factors (TAFs). Interacts with Tbp, Taf2 and Taf4.

Similarity

Belongs to the TAF12 family.

Keywords

Alternative initiation   Complete proteome   Direct protein sequencing   Nucleus   Reference proteome   Transcription   Transcription regulation  

Feature

chain  Transcription initiation factor TFIID subunit 12
splice variant  In isoform 22 kDa.

Uniprot

Q1HPY2   A0A2H1X0Q1   A0A2W1BYW7   A0A2A4K204   A0A3S2NKN7   A0A1E1VYS3   + More
S4PH38   A0A212FFJ6   H9JKX1   A0A194Q0D6   A0A1E1WSY0   K7IXY9   A0A026WZE8   A0A1B6D8L7   A0A1I8MPH7   A0A336NAI3   T1PHE6   A0A1I8MPI6   A0A1I8PLH2   A0A1I8PLM5   A0A194RPG3   A0A1B6M181   A0A1W4WBZ0   A0A1W4W199   P49905-2   A0A0B4KFN0   B4QTN1   A0A0R3NJA5   B4GMF4   P49905   A0A0P9ARR5   A0A0R1E8K7   A0A182V510   A0A182TVL5   A0A182LC85   A0A182XE96   Q7QBK4   A0A182HJ25   B3M107   B4HHZ2   A0A0A1XHG1   A0A0K8US36   Q294X6   B3P4H3   A0A3B0K566   A0A034WEK5   B4PU29   B4JFH3   A0A091WNQ9   A0A093C770   G3W385   A0A182JMV0   A0A091I8B7   A0A093GKA9   H9GH17   A0A2D4KXY8   A0A1W7RCJ5   H0YR34   A0A0Q9X2T8   A0A093J9C2   A0A093PZQ5   A0A091UV15   A0A091WQ17   A0A093R736   U3I525   A0A091L9Q4   A0A091N0S5   U3JF79  

Pubmed

28756777    23622113    22118469    19121390    26354079    20075255    + More
24508170    30249741    25315136    7545910    8276241    10731132    12537572    12537569    12537568    12537573    12537574    16110336    17569856    17569867    17994087    15632085    17550304    20966253    12364791    14747013    17210077    25830018    25348373    21709235    21881562    26358130    20360741    23749191   

EMBL

DQ443270    ABF51359.1    ODYU01012499    SOQ58842.1    KZ149914    PZC78020.1    + More
NWSH01000216    PCG78301.1    RSAL01000013    RVE53372.1    GDQN01011179    GDQN01010867    JAT79875.1    JAT80187.1    GAIX01005935    JAA86625.1    AGBW02008814    OWR52500.1    BABH01011399    BABH01011400    KQ459582    KPI98763.1    GDQN01001118    JAT89936.1    KK107077    QOIP01000010    EZA60519.1    RLU17724.1    GEDC01015298    GEDC01012539    GEDC01005147    JAS22000.1    JAS24759.1    JAS32151.1    UFQS01000197    UFQT01000197    UFQT01004991    SSX01201.1    SSX35848.1    KA648191    AFP62820.1    KQ460075    KPJ17911.1    GEBQ01030250    GEBQ01010286    JAT09727.1    JAT29691.1    U06450    U06456    S67741    AE014297    AY061435    AGB95861.1    CM000364    EDX13336.1    CM000070    KRT01105.1    CH479185    EDW38028.1    CH902617    KPU80149.1    CM000160    KRK03905.1    KRK03906.1    AAAB01008879    EAA08444.5    APCN01002118    EDV43236.1    CH480815    EDW42574.1    GBXI01006983    GBXI01003942    JAD07309.1    JAD10350.1    GDHF01022807    GDHF01020533    JAI29507.1    JAI31781.1    EAL28836.2    CH954181    EDV49488.1    OUUW01000014    SPP88443.1    GAKP01006230    JAC52722.1    EDW97679.1    KRK03907.1    CH916369    EDV93454.1    KK736104    KFR17297.1    KL240727    KFV11800.1    AEFK01121580    AEFK01121581    AXCP01008524    KL218362    KFP04447.1    KL216607    KFV70710.1    AAWZ02034328    IACL01101572    LAB13586.1    GDAY02002603    JAV48864.1    ABQF01054975    ABQF01054976    ABQF01054977    CH964232    KRF99425.1    KK603335    KFW07569.1    KL670584    KFW79645.1    KK404565    KFQ81503.1    KL411121    KFR03601.1    KL441883    KFW94420.1    ADON01130141    KL304755    KFP51930.1    KK840848    KFP83358.1    AGTO01020984   

Proteomes

UP000218220    UP000283053    UP000007151    UP000005204    UP000053268    UP000002358    + More
UP000053097    UP000279307    UP000095301    UP000095300    UP000053240    UP000192221    UP000000803    UP000000304    UP000001819    UP000008744    UP000007801    UP000002282    UP000075903    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000001292    UP000008711    UP000268350    UP000001070    UP000053605    UP000007648    UP000075880    UP000054308    UP000053875    UP000001646    UP000007754    UP000007798    UP000053258    UP000053283    UP000016666    UP000016665   

PRIDE

Q1HPY2    H9JKX1    P49905   

Pfam

PF03847   TFIID_20kDa

Interpro

IPR003228   TFIID_TAF12_dom        + More
IPR009072   Histone-fold       
IPR037794   TAF12       

SUPFAM

SSF47113   SSF47113       

Gene 3D

1.10.20.10    

CDD

cd07981  TAF12

ProteinModelPortal

Q1HPY2   A0A2H1X0Q1   A0A2W1BYW7   A0A2A4K204   A0A3S2NKN7   A0A1E1VYS3   + More
S4PH38   A0A212FFJ6   H9JKX1   A0A194Q0D6   A0A1E1WSY0   K7IXY9   A0A026WZE8   A0A1B6D8L7   A0A1I8MPH7   A0A336NAI3   T1PHE6   A0A1I8MPI6   A0A1I8PLH2   A0A1I8PLM5   A0A194RPG3   A0A1B6M181   A0A1W4WBZ0   A0A1W4W199   P49905-2   A0A0B4KFN0   B4QTN1   A0A0R3NJA5   B4GMF4   P49905   A0A0P9ARR5   A0A0R1E8K7   A0A182V510   A0A182TVL5   A0A182LC85   A0A182XE96   Q7QBK4   A0A182HJ25   B3M107   B4HHZ2   A0A0A1XHG1   A0A0K8US36   Q294X6   B3P4H3   A0A3B0K566   A0A034WEK5   B4PU29   B4JFH3   A0A091WNQ9   A0A093C770   G3W385   A0A182JMV0   A0A091I8B7   A0A093GKA9   H9GH17   A0A2D4KXY8   A0A1W7RCJ5   H0YR34   A0A0Q9X2T8   A0A093J9C2   A0A093PZQ5   A0A091UV15   A0A091WQ17   A0A093R736   U3I525   A0A091L9Q4   A0A091N0S5   U3JF79  

PDB

6MZM     E-value=4.4613e-40,     Score=409

KEGG

732959    K03126 transcription initiation factor TFIID subunit 12 | (RefSeq) transcription initiation factor T

PATHWAY

03022    Basal transcription factors - Bombyx mori (domestic silkworm)

GO

GO:0003743   GO:0046695   GO:0005669   GO:0006352   GO:0046982   GO:0000124   GO:0005634   GO:0042803   GO:0006367   GO:0008134   GO:0043966   GO:0004402   GO:0016251   GO:0051123   GO:0017025   GO:0003677   GO:0003713   GO:0003700   GO:0030914   GO:0051091   GO:0033276   GO:0006412   GO:0007219   GO:0007275   GO:0016021   GO:0004672   GO:0048384  

PANTHER

PTHR12264  

Subcellular location

Nucleus  

Length:

176

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06001

Exp number, first 60 AAs:

0.06001

Total prob of N-in:

0.25797

outside

1  -  176

 

 

Pi

26.553088

Theta

187.377358

Tajima's D

2.911684

CLR

0.326666

CSRT

0.975751212439378

Interpretation

Uncertain