Gene

KWMTBOMO03865

Pre Gene Modal

BGIBMGA010174

Annotation

PREDICTED:_uncharacterized_protein_LOC101740250_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr7(-):5203748-5212325      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.131

CDS

ATGTCTGCAAGTTTTGAACACACCGCTATGAAGAGCAGTTTCTCGCTGTCGTCACTGAGGAGCGCGCCCGCGCCGCCCGGCGGACCCTGCGAACAACTCGAGCGGCCTTACCATAGCCTCACTAAGAAGAGGAAGGAGCCGTGTAGAGAAGCCTGGCGCCGGAGTTGGGGCTCGACAGCGAGTGGCGGCAGCGCCGGCGACGATCTATGGCCGCTACTGCAACGACACTACGACTACATCATGGATAACCAGATCATCGACAGTTGCAAGGAAGCAAACGGCGAATTACTATCACATAATCCGTCAGCTTTGCTGTCTGGTCCGTGTCTACTGAACCCAACATCGGGGTTCAACAGACAGTGGTCGCTGAATCAGCTCGTATCCGAATTCGACGAGCTCTGCCAGTGGCTGACACACGTGCAGGAAGAAATATATTCTAGTCCCGAGAATTTGTCCAATTGGAAGCTTAGAGCGAATCGTATGGCAGAATTGGTGGCGGTCGAGCCGCGGCGTGCGAAGTTCGTTGAACAAGCGAATGCTATACTGGAGAGGATACCTGAAGCCAACGGAGAGGTGACCTGGCGTATTGAGCACTTGAGGATCAAGTGGGAAGCCCTTCGTCTGCTGCTCAGTCCGGAACAACCGCATCTTGACGGCGAGAATCCTGATACAGTTGACACCGCCCACGAGCTACGTTGCCTTCGTAGATGGTTGCACAGCATGGAAGGCCGCCTTCCACCACCCTCGCTTGCTGCAGCCCGCTCAGCCTCCCATCACGAGCTACTCAGGAAATTGAGAGAGCACCAGGTATGA

Protein

MSASFEHTAMKSSFSLSSLRSAPAPPGGPCEQLERPYHSLTKKRKEPCREAWRRSWGSTASGGSAGDDLWPLLQRHYDYIMDNQIIDSCKEANGELLSHNPSALLSGPCLLNPTSGFNRQWSLNQLVSEFDELCQWLTHVQEEIYSSPENLSNWKLRANRMAELVAVEPRRAKFVEQANAILERIPEANGEVTWRIEHLRIKWEALRLLLSPEQPHLDGENPDTVDTAHELRCLRRWLHSMEGRLPPPSLAAARSASHHELLRKLREHQV

Description

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.

Subunit

Dimer of alpha and beta chains. A typical microtubule is a hollow water-filled tube with an outer diameter of 25 nm and an inner diameter of 15 nM. Alpha-beta heterodimers associate head-to-tail to form protofilaments running lengthwise along the microtubule wall with the beta-tubulin subunit facing the microtubule plus end conferring a structural polarity. Microtubules usually have 13 protofilaments but different protofilament numbers can be found in some organisms and specialized cells.

Similarity

Belongs to the tubulin family.

Uniprot

H9JKX3   A0A2A4K3B9   A0A3S2KWW8   A0A194RK33   A0A2W1BWM3   A0A194Q0E1   + More
A0A154P087   A0A088AKL7   A0A0J7NPZ4   E2BRQ2   F4WDG2   A0A2A3ECI2   E9IZP9   A0A0N0BGY9   A0A2J7Q4T8   A0A0L7QQ29   A0A3L8DKT2   E2A9Q5   A0A026WM92   A0A158NIR1   A0A195BZ66   A0A151J7A1   A0A151X194   A0A195FRG0   K7JF83   A0A195CA67   A0A310SJM0   V5GRJ2   A0A1B6K0C3   A0A1B6DPW1   A0A1B6M7Q4   A0A1B6EWZ8   A0A1B6L1P0   A0A1B6LM59   A0A2R7WF41   A0A069DY63   A0A224XHT5   T1HCR3   A0A023EY65   T1IPR3   A0A0K8SH65   A0A0A9W446   A0A0K8SIL1   A0A0A9X443   A0A0A9WYK2  

Pubmed

19121390    26354079    28756777    20798317    21719571    21282665    + More
30249741    24508170    21347285    20075255    26334808    25474469    25401762   

EMBL

BABH01011384    NWSH01000174    PCG78751.1    RSAL01002821    RVE40409.1    KQ460075    + More
KPJ17907.1    KZ149914    PZC78024.1    KQ459582    KPI98768.1    KQ434787    KZC05326.1    LBMM01002656    KMQ94520.1    GL449978    EFN81646.1    GL888087    EGI67742.1    KZ288285    PBC29447.1    GL767232    EFZ13953.1    KQ435768    KOX75272.1    NEVH01018377    PNF23598.1    KQ414792    KOC60743.1    QOIP01000007    RLU21055.1    GL437918    EFN69857.1    KK107152    EZA57073.1    ADTU01017081    ADTU01017082    ADTU01017083    KQ976394    KYM93221.1    KQ979695    KYN19708.1    KQ982603    KYQ53961.1    KQ981285    KYN43180.1    AAZX01000619    AAZX01007219    AAZX01008461    AAZX01009647    AAZX01010443    KQ978068    KYM97585.1    KQ760551    OAD59858.1    GALX01005583    JAB62883.1    GECU01003103    JAT04604.1    GEDC01009590    JAS27708.1    GEBQ01008024    JAT31953.1    GECZ01027280    JAS42489.1    GEBQ01022350    JAT17627.1    GEBQ01015147    JAT24830.1    KK854735    PTY18287.1    GBGD01000202    JAC88687.1    GFTR01008825    JAW07601.1    ACPB03001290    ACPB03001291    GBBI01004710    JAC14002.1    JH431265    GBRD01013205    JAG52621.1    GBHO01043999    JAF99604.1    GBRD01013201    JAG52625.1    GBHO01030061    JAG13543.1    GBHO01030062    JAG13542.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000053268    UP000076502    + More
UP000005203    UP000036403    UP000008237    UP000007755    UP000242457    UP000053105    UP000235965    UP000053825    UP000279307    UP000000311    UP000053097    UP000005205    UP000078540    UP000078492    UP000075809    UP000078541    UP000002358    UP000078542    UP000015103   

PRIDE

H9JKX3   

Pfam

PF03953   Tubulin_C        + More
PF00091   Tubulin
PF10541   KASH

Interpro

IPR002452   Alpha_tubulin        + More
IPR017975   Tubulin_CS       
IPR003008   Tubulin_FtsZ_GTPase       
IPR008280   Tub_FtsZ_C       
IPR037103   Tubulin/FtsZ_C_sf       
IPR023123   Tubulin_C       
IPR000217   Tubulin       
IPR018316   Tubulin/FtsZ_2-layer-sand-dom       
IPR036525   Tubulin/FtsZ_GTPase_sf       
IPR012315   KASH       
IPR039906   Anc-1-like       
IPR039123   PPTC7       
IPR036679   FlgN-like_sf       
IPR018159   Spectrin/alpha-actinin       

SUPFAM

SSF55307   SSF55307        + More
SSF52490   SSF52490       
SSF140566   SSF140566       

Gene 3D

1.10.287.600     3.30.1330.20     3.40.50.1440    

ProteinModelPortal

H9JKX3   A0A2A4K3B9   A0A3S2KWW8   A0A194RK33   A0A2W1BWM3   A0A194Q0E1   + More
A0A154P087   A0A088AKL7   A0A0J7NPZ4   E2BRQ2   F4WDG2   A0A2A3ECI2   E9IZP9   A0A0N0BGY9   A0A2J7Q4T8   A0A0L7QQ29   A0A3L8DKT2   E2A9Q5   A0A026WM92   A0A158NIR1   A0A195BZ66   A0A151J7A1   A0A151X194   A0A195FRG0   K7JF83   A0A195CA67   A0A310SJM0   V5GRJ2   A0A1B6K0C3   A0A1B6DPW1   A0A1B6M7Q4   A0A1B6EWZ8   A0A1B6L1P0   A0A1B6LM59   A0A2R7WF41   A0A069DY63   A0A224XHT5   T1HCR3   A0A023EY65   T1IPR3   A0A0K8SH65   A0A0A9W446   A0A0K8SIL1   A0A0A9X443   A0A0A9WYK2  

KEGG

101740250    no KO assigned | (RefSeq) uncharacterized LOC101740250

GO

GO:0005525   GO:0007017   GO:0005874   GO:0005200   GO:0003924   GO:0005737   GO:0016301   GO:0016021  

PANTHER

PTHR11588   PTHR21524   PTHR12320  

Subcellular location

  

Length:

270

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00022

Exp number, first 60 AAs:

9e-05

Total prob of N-in:

0.03115

outside

1  -  270

 

 

Pi

293.069475

Theta

170.492823

Tajima's D

2.265451

CLR

0.254372

CSRT

0.91770411479426

Interpretation

Uncertain