Silkworm Genome Informatics Database

Gene

KWMTBOMO03864

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr7(+):5137596-5138169 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.759

CDS

ATGAACACATTCTCGCTACAGTTCAAGATTCGCACCACAATACGTAAAGAGCACGGTACACTTGACAAAGTGACAGTCGACCTCCCCGGTCGGAGACCTAGGACAAGAGACTCAAGACAAGATGGAAAGATGTACTGTGATGTGTCTGTTGTAGATGATGTGCTGAAGGGCAAGAGGGAATACAATGTTACTAATGAAGATGTCGAAGATAGAGCGAAATGGAGGAGAAAAATAAGGAAAGCTGACCCCACCAACATGTGGGATGAATAG

Protein

MNTFSLQFKIRTTIRKEHGTLDKVTVDLPGRRPRTRDSRQDGKMYCDVSVVDDVLKGKREYNVTNEDVEDRAKWRRKIRKADPTNMWDE

Uniprot

D7F169 A0A194QUS2 A0A194QYH6 A0A194R601 A0A0N1IQB7 A0A194Q8G8 + More
A0A194PX13 A0A0N1IH79 A0A016SLY4 A0A016TQJ7 A0A0C2CC22 A0A016WD95

Pubmed

20470440 26354079 25730766

EMBL

FJ265554 ADI61822.1 KQ461108 KPJ09278.1 KQ461154 KPJ08631.1 + More
KQ460644 KPJ13248.1 LADI01004707 KPJ20598.1 KQ459564 KPI99700.1 KQ459586 KPI97862.1 KQ460254 KPJ16353.1 JARK01001539 EYB91708.1 JARK01001422 EYC04723.1 KN740241 KIH53853.1 JARK01000378 EYC37585.1

Proteomes

UP000053240 UP000053268 UP000024635

PRIDE

D7F169

Pfam

PF00078 RVT_1

Interpro

IPR000477 RT_dom + More
IPR036691 Endo/exonu/phosph_ase_sf

SUPFAM

SSF56219 SSF56219

Gene 3D

3.60.10.10

ProteinModelPortal

D7F169 A0A194QUS2 A0A194QYH6 A0A194R601 A0A0N1IQB7 A0A194Q8G8 + More
A0A194PX13 A0A0N1IH79 A0A016SLY4 A0A016TQJ7 A0A0C2CC22 A0A016WD95

KEGG

105842995 no KO assigned | (RefSeq) RNA-directed DNA polymerase from mobile element jockey-like

GO

GO:0003964 GO:0004519

Length:

89

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.18551

outside

1 - 89

Pi

244.992189

Theta

193.073379

Tajima's D

0.84631

CLR

0.635203

CSRT

0.614419279036048

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics