Silkworm Genome Informatics Database

Gene

KWMTBOMO03860 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010178

Annotation

PREDICTED:_splicing_factor_arginine/serine-rich_6_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr7(-):4969895-4978585 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.362

CDS

ATGGTTGGATCACGAGTGTATGTTGGTGGTCTCCCCTTTGGAGTAAGAGAGAGAGACTTGGAAAAGTTCTTCAAAGGTTTTGGAAGAATCAGAGACATACTTATCAAGAATGGATATGGTTTTGTTGAATTTGAAGATTACAGAGATGCAGATGATGCTGTGTACGAGCTAAATGGAAAAGAACTATTGGGTGAAAGGGTGGTGGTGGAGCCGGCGAGGGGCATCGATCGCAGCGCCGACCGGTACCGGCGCGGCGACCGGCACTACGAGCGCTCCGGCGGCGGCCGCTCGCGATACGAATACGGACCGCCAACGCGCACCGAGTATCGACTTATCGTCGAGAATTTGTCTAGCCGCATTAGCTGGCAGGATTTGAAAGACTATATGCGTCAAGCTGGCGAAGTGACTTACGCTGACGCCCATAAACAACACAGGAATGAAGGTGTGGTAGAATTTGCGACGCACTCGGACATGCGGGCCGCCATTGAGAAACTGGACGGTACGGAACTGAACGGACGGCGCGTGCGACTCGTGGAGGATCGGAGGTCGTCGCGCCGGCGCACGCGCTCCTCGTCCAGCCGCTCGCGCTCCCGCTCCCGGGACAGGAGGCGCTCGCGATCCAGATCACGCCGTTCATCTCGTTCTAAATCTAGACAGAAGAGCAAGAGCCCTGCTGCTAAATCTCGCTCTAGATCGCGTTCCAATGGCCGTAACAAAGACGAGGAGGGTGGGGGTCGCGGACACCGCGCCGGCAGCCGCTCTCGCTCCCGCTCCCGCTCGGAGCCCGCCCACGCCGACCGCAACGGGCGCCGCTCCGACGACCGCTCCAAGTCCCGCGACATCAAAGCCGACTCCAAGTAA

Protein

MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHYERSGGGRSRYEYGPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVRLVEDRRSSRRRTRSSSSRSRSRSRDRRRSRSRSRRSSRSKSRQKSKSPAAKSRSRSRSNGRNKDEEGGGRGHRAGSRSRSRSRSEPAHADRNGRRSDDRSKSRDIKADSK

Uniprot

A0A194PZM2 R4WSL2 A0A2J7PKQ3 A0A067R199 A0A2P8YPC7

Pubmed

26354079 23691247 24845553 29403074

EMBL

KQ459582 KPI98771.1 AK417697 BAN20912.1 NEVH01024534 PNF16912.1 + More
KK853101 KDR11346.1 PYGN01000453 PSN46083.1

Proteomes

UP000053268 UP000235965 UP000027135 UP000245037

Pfam

PF00076 RRM_1

Interpro

IPR035585   RRM1_SRSF4-like        + More
IPR035979   RBD_domain_sf
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

CDD

cd12337 RRM1_SRSF4_like

ProteinModelPortal

A0A194PZM2 R4WSL2 A0A2J7PKQ3 A0A067R199 A0A2P8YPC7

PDB

2O3D E-value=3.78979e-09, Score=145

KEGG

733142 K12893 splicing factor, arginine/serine-rich 4/5/6 | (RefSeq) Sfrs6; splicing factor arginine/serine

PATHWAY

03040 Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003723 GO:0003676 GO:0000166 GO:0005509 GO:0005515 GO:0007219 GO:0007275 GO:0016021 GO:0004672 GO:0048384

Length:

286

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00016

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.02641

outside

1 - 286

Pi

237.866182

Theta

190.503916

Tajima's D

0.779388

CLR

0.423175

CSRT

0.592170391480426

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	VYVGGIPFGVR	100.00	0.002
26280517	MQIFVK	100.00	0.002
28467696	NEGVIIHAGPK	100.00	0.002
26280517	MNTISSCNYDGSGRR	100.00	0.045

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics