SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03857
Pre Gene Modal
BGIBMGA010194
Annotation
PREDICTED:_putative_DNA_helicase_Ino80?_partial_[Papilio_polytes]
Location in the cell
Nuclear   Reliability : 4.034
 

Sequence

CDS
ATGTGGCATCGTAAACACAAGTACATGCGGCTGGATGGCTCCAGCAAGATCTCCGCCAGACGAGACATGGTTGCTGATTTCCAGGCCCGGACGGATATATTCGTGTTCCTTCTGTCCACTCGAGCCGGAGGTCTGGGCATCAACTTGACGGCGGCCGATACGGTTATATTCTACGATTCGGACTGGAATCCGACAGTTGATCAGCAGGCCATGGACCGGGCTCATCGTTTGGGACAGACCAAACAGGTCACAGTCTACAGGCTGATTTGTAAAGGAACCATCGAGGAGAGAATAATGCAACGAGCCAGGGAGAAGAGTGAGATCCAAAGAATGGTGATCAGCGGCGGCAATTTCAAACCGGACACCTTGAAGCCCAAGGAAGTTGTGTCGCTGCTGTTGGACGACGAGGAAATTGAACTCAAATATCGACAGAAGTCCGAAGAGAAGAAAATGTTTGAAGAGAGAGAACGCAAGAGAAAGCTCGGAATCCTGCCCAGTGCTATTTCGTCGCCGCCGGTGGAAGTGAAACGGCCCAGGGATTCCGCTTCGGAGCCCGGCAGCCCCCTGCAAGTCGACGACGAGAGCGACGGTCTGGTAGTGGACGTGCCCTCGCAGCCACCCACCCCCACCTCATACTCGCCGTCGTTCCGCCCGTCGTGGTCGGGCAGCCGCGGGAGTCGCGGTTCGCGGCGCGGCCGCCCGCGCGGCTCCCGACACTGCGCGTCGCGCCGCCCGCGGCCCGCGCCCGACAACAACGCGCTCGCCGCAGGTACGTGTACGAACATTATACAGGGTGTTGTATCAAACAAAGAAAAAAAAATCGAATAG
Protein
MWHRKHKYMRLDGSSKISARRDMVADFQARTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERIMQRAREKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEEIELKYRQKSEEKKMFEERERKRKLGILPSAISSPPVEVKRPRDSASEPGSPLQVDDESDGLVVDVPSQPPTPTSYSPSFRPSWSGSRGSRGSRRGRPRGSRHCASRRPRPAPDNNALAAGTCTNIIQGVVSNKEKKIE

Summary

Pfam
PF13892   DBINO        + More
PF00271   Helicase_C
PF00176   SNF2_N
Interpro
IPR038718   SNF2-like_sf        + More
IPR027417   P-loop_NTPase       
IPR000330   SNF2_N       
IPR031047   Ino80       
IPR020838   DBINO       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
SUPFAM
SSF52540   SSF52540       
Gene 3D
PDB
6HTS     E-value=8.96626e-72,     Score=685

Ontologies

Topology

Length:
275
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
4.55076
Exp number, first 60 AAs:
4.54103
Total prob of N-in:
0.48166
outside
1  -  275
 
 

Population Genetic Test Statistics

Pi
314.406894
Theta
180.676536
Tajima's D
2.211223
CLR
0.200136
CSRT
0.913704314784261
Interpretation
Uncertain
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