SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03856
Pre Gene Modal
BGIBMGA010194
Annotation
PREDICTED:_putative_DNA_helicase_Ino80_[Amyelois_transitella]
Full name
Chromatin-remodeling ATPase INO80      
Location in the cell
Mitochondrial   Reliability : 2.423
 

Sequence

CDS
ATGGGCCTCGGCAAGACGGTGCAGTGCATAGCGTTCCTGTGCCACGTGGCCGAGCGGCTGGGCGTGTGGGGCCCGTTCCTGGTCGTGTCTCCCGCCTCCACACTCCACAACTGGCAACAAGAGATGCAGAGATTCGTGCCAGATTTTAAAGTAGTCCCGTACTGGGGAAGTCCAAGCGAACGGAAAATCCTCCGTCAGTTCTGGGAGCGTAAGGACCTGCACACGCAAGCGGCCGCTTTCCACGTGGTCGTGACGTCATACCAAATAGTCGTCTCCGATCTCAAGTATTTGAATCGCGTGTCCTGGCAGTACATGATACTGGACGAAGCCCAAGCCATCAAAAGCTCCGCGAGTATGCGATGGAAGCTCTTACTTGGGTTCAGCTGCAGGAACAGATTGTTATTATCCGGCACTCCGATACAAAACAGTATGGCCGAGCTATGGGCTCTATTGCATTTCATAATGCCAACATTATTTGATTCACATGAAGAATTTAATGAATGGTTCTCCAAAGACATTGAAAGTCATGCAGAAAATAAAAGCACTATAGATGAAAAACATCTATCCAGACTGCACATGATTTTGAAACCGTTTATGTTACGTCGAATAAAGAAGGATGTGGAGAATGAATTGTCTGACAAAATAGAGATCATGGTCCACTGTCCTTTGACTATAAGACAGAAATTATTGTACATAGCTCTTAAGAAGAAAATAAAGATAGAAGAATTATTACATTTCTCTGTGGGTGCTGAGTCCGGGCACAATGTTGATAAAAATTTCACATCGAATCTGATGAATTTGGTTATGCAGTTCAGGAAGGTTTGCAATCACCCCGAGCTGTTCGAGCGGCGCGACGTGAGGTCTCCCTTCACGATGCTCCTCGACGATTACAACCTGCCGAAGCTCGTGGTCGAAGACTGCATCCTGATTCGTTCGACGTCCTCAAAACGCCATCTCCTATACAACCGGCTGTCGATACTGACGCCGGGCCACGTGCAGAGCGGGGTCGGCGCCGGCAGCTGCTTCGGCTTCACGCGGCTCGTGGACGTGTCGCCGCGGGAGTTACACTTGCTGACGTCATGCGGCTGGCTGCACGCCATGCTACACATCGAGCAATGTCTAGAGAAATACGAAAAACTCCGACACAGACAAGACTGGTGGTACAGCGAAAACATTAGCGCCCAGACCACGTCCGATTATTATAGAGTTAATAGTAAAGATATGCTTTTGATATGTCCCGACGGAGATGTGTTGAAGAAGAGAAAAGAGGACAGTTTGTTGTGGAAGGAGTTGCTGTTTACCGATCCGCTGTGGGTCGAAGGTGGTCCATTCTTCGCACACACGGATGTCGTGTTGCATTACGTACCGGAAACGGTCGAGCACAGGACGATGCGTCTGAGGAACTTGAAAGATAACGGGCAGTCAGATATGTTGAGTGAGATAAAGACAGAAGACGGAGGGGTTGTGGCAGTAAAGACTGAGGAAATACCAGAATTCGAACACGTGGAACGGCCACCTGAAGTTTTCCCTGTTATGGCAACACCGATGCCCGCTTTCTTGTACGCTGCTCAACAGAAGGTCTGCGCGAGCACGCTGACTCCGTTCGCGTCGTCGCGCAGCTTCGCGTACTACATGACGCGGCACCGGCACGCCGAGTGCAGGGCGGGGTGCGAGACGTTGGGGCGGCTGTGCGCGGCGAGCAGGCCGCCCTACGGATGGGCGACTATACAAGTACCCGGTATGGCAGACTAA
Protein
MGLGKTVQCIAFLCHVAERLGVWGPFLVVSPASTLHNWQQEMQRFVPDFKVVPYWGSPSERKILRQFWERKDLHTQAAAFHVVVTSYQIVVSDLKYLNRVSWQYMILDEAQAIKSSASMRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSTIDEKHLSRLHMILKPFMLRRIKKDVENELSDKIEIMVHCPLTIRQKLLYIALKKKIKIEELLHFSVGAESGHNVDKNFTSNLMNLVMQFRKVCNHPELFERRDVRSPFTMLLDDYNLPKLVVEDCILIRSTSSKRHLLYNRLSILTPGHVQSGVGAGSCFGFTRLVDVSPRELHLLTSCGWLHAMLHIEQCLEKYEKLRHRQDWWYSENISAQTTSDYYRVNSKDMLLICPDGDVLKKRKEDSLLWKELLFTDPLWVEGGPFFAHTDVVLHYVPETVEHRTMRLRNLKDNGQSDMLSEIKTEDGGVVAVKTEEIPEFEHVERPPEVFPVMATPMPAFLYAAQQKVCASTLTPFASSRSFAYYMTRHRHAECRAGCETLGRLCAASRPPYGWATIQVPGMAD

Summary

Description
ATPase component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and DNA repair. Binds DNA. As part of the INO80 complex, remodels chromatin by shifting nucleosomes.
Catalytic Activity
ATP + H2O = ADP + H(+) + phosphate
Subunit
Component of the chromatin remodeling Ino80 complex.
Similarity
Belongs to the SNF2/RAD54 helicase family.
Keywords
ATP-binding   Coiled coil   Complete proteome   DNA damage   DNA recombination   DNA repair   DNA-binding   Hydrolase   Nucleotide-binding   Nucleus   Phosphoprotein   Reference proteome   Transcription   Transcription regulation  
Feature
chain  Chromatin-remodeling ATPase INO80
EC Number
3.6.4.-
EMBL
BABH01011336    BABH01011337    BABH01011338    BABH01011339    BABH01011340    BABH01011341    + More
BABH01011342    NWSH01000134    PCG79202.1    RSAL01000013    RVE53360.1    KQ459582    KPI98777.1    KQ460075    KPJ17900.1    AGBW02009838    OWR49778.1    JRES01000342    KNC32069.1    GBXI01006469    JAD07823.1    GDHF01014684    GDHF01011215    JAI37630.1    JAI41099.1    GDHF01025719    JAI26595.1    GAKP01018694    JAC40258.1    GAMC01018688    JAB87867.1    GAMC01018687    JAB87868.1    JXJN01007798    CH940650    EDW68115.2    KRF83683.1    CH916378    EDV98617.1    CH964272    EDW83810.2    CVRI01000059    CRL03233.1    NEVH01024534    PNF16910.1    GECZ01032442    JAS37327.1    OUUW01000008    SPP83759.1    CH954181    EDV48491.1    UFQT01001724    SSX31529.1    CH902617    EDV43381.2    BT133394    AFH41853.1    CM000160    EDW96029.2    AE014297    AY069786    AAF55658.2    AAL39931.1    KQ981264    KYN44039.1    KK853101    KDR11347.1    KPU80252.1    CH480840    EDW49472.1    KQ980989    KYN10611.1    BT122159    ADE34301.1    CP012526    ALC46989.1    CH933806    EDW14836.1    KRG01233.1    CH477867    EAT35481.1    GEBQ01020447    JAT19530.1    GEHC01001208    JAV46437.1    ADTU01001358    GDUN01000149    JAN95770.1    KQ982353    KYQ57195.1    CM000070    EAL29175.3    GANO01001223    JAB58648.1    KQ434792    KZC05466.1    GEDC01021247    GEDC01013818    GEDC01013084    JAS16051.1    JAS23480.1    JAS24214.1    KQ978220    KYM96313.1    DS233397    EDS29751.1    KQ435710    KOX79869.1    KQ764881    OAD54335.1    KQ414652    KOC66120.1    KZ288215    PBC32751.1    CH479185    EDW38529.1    PBC32752.1    KK107064    EZA60837.1    LBMM01005290    KMQ91647.1    GBYB01015175    JAG84942.1    GBYB01015174    JAG84941.1    KQ976519    KYM82145.1    GFDL01012919    JAV22126.1    CCAG010019323    GFTR01008790    JAW07636.1    DS235277    EEB14284.1    GBBI01003018    JAC15694.1    GDHC01019620    JAP99008.1    GL453713    EFN75626.1    APCN01002995    GL435204    EFN73818.1    KQ971307    EFA10951.2    AAAB01008900    EAA09385.4    ACPB03006289    GL732614    EFX71068.1    AXCM01006176    ATLV01024162    ATLV01024163    KE525350    KFB50887.1    GDIQ01096627    JAL55099.1    GDIQ01196686    JAK55039.1    HACA01000584    CDW17945.1    GEZM01039930    GEZM01039929    JAV81087.1    GDIQ01157400    JAK94325.1    KK857149    PTY26882.1    GDIP01215208    JAJ08194.1    GDIP01189210    JAJ34192.1   
Pfam
PF00176   SNF2_N        + More
PF00271   Helicase_C
PF13892   DBINO
PF01709   Transcrip_reg
PF01094   ANF_receptor
PF07562   NCD3G
Interpro
IPR000330   SNF2_N        + More
IPR031047   Ino80       
IPR027417   P-loop_NTPase       
IPR038718   SNF2-like_sf       
IPR014001   Helicase_ATP-bd       
IPR020838   DBINO       
IPR001650   Helicase_C       
IPR002876   Transcrip_reg_TACO1-like       
IPR026564   Transcrip_reg_TACO1-like_dom3       
IPR029072   YebC-like       
IPR001828   ANF_lig-bd_rcpt       
IPR038550   GPCR_3_9-Cys_sf       
IPR028082   Peripla_BP_I       
IPR011500   GPCR_3_9-Cys_dom       
IPR000337   GPCR_3       
SUPFAM
SSF52540   SSF52540        + More
SSF75625   SSF75625       
SSF53822   SSF53822       
Gene 3D
PDB
6HTS     E-value=6.9784e-133,     Score=1216

Ontologies

Topology

Subcellular location
Nucleus  
Length:
583
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.551760000000001
Exp number, first 60 AAs:
0.45401
Total prob of N-in:
0.02576
outside
1  -  583
 
 

Population Genetic Test Statistics

Pi
332.404235
Theta
20.542242
Tajima's D
3.019943
CLR
0.3487
CSRT
0.980900954952252
Interpretation
Uncertain
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