SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03853
Pre Gene Modal
BGIBMGA010181
Annotation
PREDICTED:_tubulin_polyglutamylase_TTLL4-like_isoform_X2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.814
 

Sequence

CDS
ATGGATAGGCGAGTTTACTCTGATTACGAAGCAGACGTGTGCGATCCTTTGGGTTCAGTTGTTGAGTGGTCAAGACAGGGGCCGGCCCGCATCCTGCGGCGGCGCTGTCGAAGTGAGGGTGTCGACCGTTCACCGTACGAGGATGTTAGTCGCGAACGCCGCTCCGCCGACGGAATACCACGCCAAAACCGGCAGTCTAACAAAAGCTTCTTCACGCTGAACGTTGCTGATACGTACCACGATAGATTTCGCCACGAGTGCTCTCCCACTGCTGAGAACGGAGACTACATGGCGCACGATCAGGACAGATATCATAGCTATCAGCCATCAAAATCAAGATTTTATAGAGCAAGTCCTACCAGACCATTATTAGTAACCACATTATCCAATACCAAAGTAGATGACAGATTGCCCAAAGTCGAAGAATTGTTTGAGAAACTTGACCAAGATATGATGGATGTCCACAATACAAAACAACCATTGAAATCAATATTAAACAATCCTTTTTTAAAGTCACCACCTCAGGGTATACTAAAAAAACCAAAAAATAAGGTTTATCAAGATTCAAAAACTAATCTGGAAGGTCGCAGAAGGCAGCGGGCATCAAGTGAATCTGATAATTTATATTGTAACTATCATGTGGCATCTCCTATACCTGGATATGATAGCCGCCTCGGGTACATTTCAAGCAATGTGAAACGGGCAAAAGACAATTCTGGAACTGGTTACTCTTATGGTACTGCTGTAGCGAATGCAGGTCCTCGCTGCAAGAGTCCCACATACTCAAAGAACTTGAGGTGTAGCTGCAAAGATAACATGTCAAGAGATCATGTGCAAGTGTTGAGGACTACTGCTATTAACAGCGACACGGTTGACGTTCAGCCCATTATTGAATTGCCCGGCCAAGACACGCCGACCCCGACTTGCCCGACGGTGAGCCCAGCCTTGCCCGTCAGCTCAGTCACGGCGATACCAGTTAAAAAATCAATAAAGACAGTTAAGAAGAAAGTTAAAGCTAAAATTAAAGTATCGAAGATGAAATCGAACACTAAAGTCGAATGTGCCGTTATCGGAGGGGAGATGGAAGATGCACTCAGTCGATCGCCCTCCCCCGACATAGAAGTGTGGCATATGGATACAGACCCGATACCGATAGAGATAGGTGATATAGAGAAATCAACAAACTGTCCACAAAGCTAA
Protein
MDRRVYSDYEADVCDPLGSVVEWSRQGPARILRRRCRSEGVDRSPYEDVSRERRSADGIPRQNRQSNKSFFTLNVADTYHDRFRHECSPTAENGDYMAHDQDRYHSYQPSKSRFYRASPTRPLLVTTLSNTKVDDRLPKVEELFEKLDQDMMDVHNTKQPLKSILNNPFLKSPPQGILKKPKNKVYQDSKTNLEGRRRQRASSESDNLYCNYHVASPIPGYDSRLGYISSNVKRAKDNSGTGYSYGTAVANAGPRCKSPTYSKNLRCSCKDNMSRDHVQVLRTTAINSDTVDVQPIIELPGQDTPTPTCPTVSPALPVSSVTAIPVKKSIKTVKKKVKAKIKVSKMKSNTKVECAVIGGEMEDALSRSPSPDIEVWHMDTDPIPIEIGDIEKSTNCPQS

Summary

Pfam
PF03133   TTL
Interpro
IPR013815   ATP_grasp_subdomain_1        + More
IPR004344   TTL/TTLL_fam       
IPR027748   TTLL-4       
Gene 3D

Ontologies

Topology

Length:
399
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00184
Exp number, first 60 AAs:
0
Total prob of N-in:
0.03339
outside
1  -  399
 
 

Population Genetic Test Statistics

Pi
55.23856
Theta
175.776368
Tajima's D
-1.767941
CLR
143.809438
CSRT
0.032148392580371
Interpretation
Uncertain
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