SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03848
Pre Gene Modal
BGIBMGA010186
Annotation
PREDICTED:_rho_guanine_nucleotide_exchange_factor_17_isoform_X2_[Bombyx_mori]
Location
Bomo_Chr7(-):4176867-4182445      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.175
 

Sequence

CDS
ATGTCCAAGCTGTCTCCGTACGTGACGCTGGGAGCGGTGCGGTACTCGGTGCGTCGTGTTCCGGCGCCGCGCGCCTGCCCGTGCCGCTGCTGCTCCGAGGAGGCGGTGGCGGCGTGCCTCGGCCGGGCCAAGCCCGACAGACGCACGCTGGATCGCATCCAACGCCACCTGGGCCGCGGCTCGCGAGACGAGCGGCCCTCGCGCCACCAGCGCCTCCAGGCGCTCACCGACCTGCTACGGCCGCGACCGCACCAGCCCCCGCCGCCGCCACCGCTTCCGCCACCACCGCACACTGCACCAGTACTGCCACCAGTACCGCCGCCGCGTTTGCGCCACAGACACAGCCCGCCGCGAGGAGCCTCCGTTGATCGTTGCGACGAATTCGATGCAGACAACATCACTTTGGTGCGCGTTGAACCTCGATCTATTGTAGGTTCATACGCTCAGAAAACTATACCGTATCGCAGCGCGTCTTTTTCACAGGGTGACTTTGCACAAGAAAAATATTATCGAGAGTCGAAGCGTCAGCCGTCTGCCTTCGATTTCGGAAAAAGGACTATAAAGGCAGCAAGTCCAATCGTAGCGCGACTAGATACAGAATCTTCTAGTAACGCAACTGATGAAAATGTAACTGAAGAAGGATCGATAGCCTCAGTGGCATCCGTTGACTCTGCAGTTGGATCCGATGAAGGACTTTTAACCCACGCGTCTGCAGCAGGTCGTTCACCACCTTTGGATGGACCCCACAAAATATTAGGTGCACGGTCGCTAACCCATCCTTTGCCGAGACGAATACCACCTGTAAGAGAAGAAGGACCGTCAGAAGCTGGTGGAAGTCTGCCTGCGTTGATGGCACCGCGTGTCTTACATGAACTACGCGAAGAAAGTGATGGATCTCAAGCTGACAGTGCCCAAGCTCACAGTGAAGGAACTTCACCTTTGGAACCCAATCAACCATTTTCGTTCCCCCCTTTACCAGATCCTCCAGCAAATGCTTGTGCCAATATAGACTGTGATTGTTCGCAATTCCCTGTGACAGTTGATAGCCACGGAATTGACGTTGAATCGAGTGATATTGCGAGTTCGATACCAGTGCCGGTATATGAGTGTATAGTGAAACAGTGGTCAAAGGAGTTACCTCATGAAGAACTGCACCGTTCTGACGGCGCTTCGGACGGTTCGCTAGACAGAGACAAAGAAGATGAAACGATAACAAGTGAACAAGTTGCTAATCTGCTCGCTGCTGTGCAAAATCCTTGCACACCAGCCCCTATAGGTGCTAGAGAAAGAAGAAGGCCTCTTGACAAAACGAAAAGGCGGAAAGGAATTTATATAACAACACCAAGCGACGAGGGGGGAGAAGAAGATCCACCTTCGTTGAACGGGTGTAAGCGCGAAAGCAGTGACGCATCACTACAAGACATGCGTTTATCTGCCGAAACTAGAACATCATCAATACTCGGTGATAAATCAGATGATTCGTTCACAAACGGACCACCGAGTCCGTCCGATTCGATGGCTCCGATATGGCCTCGCTCAGAGGAAGTTAAATCGAGACGAGCTAGATTTTACCAGCAAAGTTCTGATGAGCGGGACGATGACTCATATCAACCAAGACGAAAATATGGTGATTCTCCGTCTACAGTGACACTTGTTCTCGTGAACGATAGTGACAGTTGTTCTCGTGACCGAACTGCTTCACCTTCGGATACTTCTGATGTTGAAGCCAAACGACAGCAGTTTTGTCGTGGACCTTTTGGTAAAAATTTAGAAGCTCCACCGAGTCGCTCAGTGGAAGTGGGTAGAAGAAGTTTTTCTGATGCAACTGTTCCAAGTCGTAAAACAAGTGTTGGTGCTATGTCAGTGGGGAGCAGGGGTCGTGGGCCTACACACGTTAGGGCAACCTCGTCACCATCAAAACTGGCTGGCGTGAAACCAGGCACGGACTTGTTGGCTGAACTCCTCCGAGGGAGCTCCGAGGCGCTTTCCAACTCCTCAGCGTTCGACAACGTGATCCTGACGCTACATCAACACAATTCGCGCTCTTGA
Protein
MSKLSPYVTLGAVRYSVRRVPAPRACPCRCCSEEAVAACLGRAKPDRRTLDRIQRHLGRGSRDERPSRHQRLQALTDLLRPRPHQPPPPPPLPPPPHTAPVLPPVPPPRLRHRHSPPRGASVDRCDEFDADNITLVRVEPRSIVGSYAQKTIPYRSASFSQGDFAQEKYYRESKRQPSAFDFGKRTIKAASPIVARLDTESSSNATDENVTEEGSIASVASVDSAVGSDEGLLTHASAAGRSPPLDGPHKILGARSLTHPLPRRIPPVREEGPSEAGGSLPALMAPRVLHELREESDGSQADSAQAHSEGTSPLEPNQPFSFPPLPDPPANACANIDCDCSQFPVTVDSHGIDVESSDIASSIPVPVYECIVKQWSKELPHEELHRSDGASDGSLDRDKEDETITSEQVANLLAAVQNPCTPAPIGARERRRPLDKTKRRKGIYITTPSDEGGEEDPPSLNGCKRESSDASLQDMRLSAETRTSSILGDKSDDSFTNGPPSPSDSMAPIWPRSEEVKSRRARFYQQSSDERDDDSYQPRRKYGDSPSTVTLVLVNDSDSCSRDRTASPSDTSDVEAKRQQFCRGPFGKNLEAPPSRSVEVGRRSFSDATVPSRKTSVGAMSVGSRGRGPTHVRATSSPSKLAGVKPGTDLLAELLRGSSEALSNSSAFDNVILTLHQHNSRS

Summary

Uniprot
H9JKY5   A0A2H1WR53   A0A194R9G4   A0A212FH49   A0A0L7KT04   A0A1E1W746   + More
A0A2A4JVJ6   A0A3S2LYF6   A0A1B6E9V0   A0A1B6D183   A0A1B6CML6  
Pubmed
19121390    26354079    22118469    26227816   
EMBL
BABH01011305    ODYU01010438    SOQ55550.1    KQ460597    KPJ13905.1    AGBW02008549    + More
OWR53047.1    JTDY01006281    KOB66144.1    GDQN01008280    JAT82774.1    NWSH01000494    PCG76031.1    RSAL01000112    RVE47029.1    GEDC01002586    JAS34712.1    GEDC01017864    JAS19434.1    GEDC01022626    JAS14672.1   
Proteomes
UP000005204    UP000053240    UP000007151    UP000037510    UP000218220    UP000283053    + More
PRIDE
H9JKY5   
Pfam
PF00621   RhoGEF
Interpro
IPR011047   Quinoprotein_ADH-like_supfam        + More
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR039919   ARHGEF10/ARHGEF17       
IPR039917   ARHGEF17       
IPR035899   DBL_dom_sf       
IPR000219   DH-domain       
SUPFAM
SSF48065   SSF48065        + More
SSF50998   SSF50998       
Gene 3D
1.20.900.10     2.130.10.10    
CDD
cd00160  RhoGEF
ProteinModelPortal
H9JKY5   A0A2H1WR53   A0A194R9G4   A0A212FH49   A0A0L7KT04   A0A1E1W746   + More
A0A2A4JVJ6   A0A3S2LYF6   A0A1B6E9V0   A0A1B6D183   A0A1B6CML6  

Ontologies

KEGG
101739427    K20689 Rho guanine nucleotide exchange factor 17 | (RefSeq) rho guanine nucleotide exchange factor 1
GO
GO:0005089   GO:0035023  
PANTHER
PTHR12877:SF15   PTHR12877  

Topology

Length:
682
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00011
outside
1  -  682
 
 

Population Genetic Test Statistics

Pi
24.87163
Theta
25.405241
Tajima's D
0.206511
CLR
1.241156
CSRT
0.43742812859357
Interpretation
Uncertain
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