Silkworm Genome Informatics Database

Gene

KWMTBOMO03847

Annotation

PREDICTED:_rho_guanine_nucleotide_exchange_factor_17_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr7(-):4068850-4095969 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.276

CDS

ATGATGTCAGTGATTGTGGACACAAGGACACACGTCGTCGTCGAATTATACGAAACGGAGAAATCGTATGTGGAAGCCTTGGAGATATTAGTAAAGAAATATCTCCAGCCCCTAAAGAGTCCGGAGAACGCAGCCTTACTTGACGCGTATCTTGTCGACGAAATCTTCTATCAAGTGCCGGCGATCCTGAATGTGCACCAAGTATTTTTAGAGCAACTGAGGAGACGGTTAGAACAATGGGATCTGCAACAAAAAGTCGGAGATGTCTTCTTGGAAGTCTTCACAAAACCAGCTGTAATGGACACTTACATGTCTTTCATAAGCAACTTGAAGAAGGCAAAAGAAACTATAAAAACTGCAGCATCATCACGACCTGCCTTCGCGAAGTTCCTAGACGCTATGGCCAGGGACCACAAGGGAAAGTTGTCTTTGGACAATTTACTAATAAAACCCGTGCAAAAGTTCCCAAGCTACAAGCTGCTGATACAAAGGCTGATCAAACATACTGATCAATCACACCCAGACCATAAACTCTTGCTAGAGGCACAAAAACAAATTCACGATCTCCTAGAATTTATTAACTGCACCGAAAAAGAAAGTTTGGAATATGAATTACAACAACAGACCCTTAGAGATTTAGAACAGATGATCGAAGGTCTGTCTAACCTGGTAACCGCTGATAGGCTGTTTATAAAACACGAAATGGTGACAATGCCTTCAGCTCAAGGAACCATCAAAGACAGAGCTCTATTTCTCTTTAATGATACGCTCTTGATAACCAGCGTGAAAAGAAGAACCGGTACTATTAAGAAACCTATGCCAACCTACCAAAGTACTATAGCGAGTCAAATGGAGGGGAACAAGTACAAACTGCTCATGCGAATGTCATTGGCTGATCTCGATATTATAAAAGCTAAAGACGAAAACGTAAGGCGAATAATCAACGAAGTAGAGAAACTAAGGGAAGACGTGAACACACTGACTCTGATATCAGATCACGTGGCAGCGCTGCACACCCAGCACGCGCAGCTTGAGGAACTCGTCCGGGACATGTTGCATTCGTTGAACCGCCAACTATCGGAGCGTCAGAACAGCGACGGCCAGTTGTGTTGCATGGAAATCACGTTGAACACCGCTAATGGCCCGGAAAATCTTACTATAATATTTTCTAAGCCTGACAAGAGAAATCAATGGGAAGAAATCATCAATGATGTCAAGCAAAAACTATGTTTGTATGGCCACGAGCGGCCACCACCAGAGTTCCTATCACCTGTGCCGATCAGGAAGACCAGAGCTGGTCTCCAGTTTACGTGTGCAGCACCCACCTTGCCGCCGCCAGGTCAATCTCCAGATGTCTGGGTGTGCAACAGTGACGGCTACGTCGGCCAAGTCTGCGTTTTGACCCTGACCCCGAAACTGGAGGTCACTTCATGCAACGGAGTGTGCAACGCTCGGATCCTGTGCGTGGCCTGCGTGCCTCCCGCACCAGCACTCACCAGGCAGCAGACCGTGGATGTACCGAGCACAAGTTCGCTGAGCAGCACCAGCTCTGTGAAGCCGGGTATCAGCATTTCCGACCCGGATGACAGTTGCAAGAATGTCCGGCTAGACAGCTCATCATCAAGCGACGAAGAAGACGACGGGTCCTCCAGCGAGACCCAGGACGCGCAGTCGGAGCGCAGCCAGGACTCAGCACGGCTGCTGCACTGCCTCGCGCGGACCCTCACCCCAAGCCACAGCAAGAGCCTCAGCACCCCACACACTGGACAGAACATACAGGTCCACCCAGTCATGAAGAGCAGCTCCAACCCGGCAGTCGACAAGCAGGCCATGGGTATTAGCGCCGGTACTCTATCATCTCCAGCCAGTCGTCAGTCTTCAGAAGACAATGCAACAACTGCTAACCAGCCCACAATGTGGCTGGGCACTGAGGATGGTTGCATCCACGTATACAATTGCATGGACAATATCAGAATCAAAAAGAATAAAGTCAAGTTGCAACACAATTCAGGGGTTCATTCCATAGTATTCGTGGAGGGGAAGGTGTTTGTGGCACTAGGAAATGGTGATCTCGTGGTGTATTGTCGGGACATTGATGGATCTTGGACTGAACGTAGCACTATCAGCGTTGGTACCGGCAGCACTCCGGTGAGCAGCATGTTGCTCTCGGGAGGGAAGCTTTGGTGCGCGACCCACGCCTCGATCAAGATCATCAATCCTCACACATTACAGGTGGACGAAACATTCCAAATAAGTTCAGAAACGAAGCCAATAAGCCACATGGCGGTCGCGGGCGTCACCATATGGCTCTCGCTGCACAACGCGGCGCAACTGCGCTGCTACAATACGAACACTCGCGAGCAGCTCGCCGAGATCAACATCACTCCGCAAGTCAGCAAGATGTTGCACGGCTGCGATGACATAATACGTCAGCACAAGGCGGCGTGTCTCCGCGTGACGGCGCTGCTCGCTCACCGGGACATGCTCTGGGTGGGCACCAGCGCCGGCGTGCTGCTGACCGCGCCACTACTGAACGCACCCAACGCGCGGACCGGGGTCTTCACTGTTCCACAACTAACAGGCGTCACCTACGGCCACACAGGGCACGTAAGATTTTTGACGATAGTCGAAAATCCGGTATCGACGAAGCAGCCGCCAAAGTCCACGCAGACCTCATTAAAGACGAAAGCGTTGAGCCGACGCTCGGCCAACGCGGAGAAGCTCCAGAAACAAGCTGAAACCGGTCAAACCAACAAAGAGACCCTCGTTATCTCCGGAGGGGACGGCTACGAAGATTTCAGGAGTTCGACGATGACCGAGGACGCCGGGAGGGAGGACTCCACCAACCATCTCCTTCTCTGGAGGGTCTGA

Protein

MMSVIVDTRTHVVVELYETEKSYVEALEILVKKYLQPLKSPENAALLDAYLVDEIFYQVPAILNVHQVFLEQLRRRLEQWDLQQKVGDVFLEVFTKPAVMDTYMSFISNLKKAKETIKTAASSRPAFAKFLDAMARDHKGKLSLDNLLIKPVQKFPSYKLLIQRLIKHTDQSHPDHKLLLEAQKQIHDLLEFINCTEKESLEYELQQQTLRDLEQMIEGLSNLVTADRLFIKHEMVTMPSAQGTIKDRALFLFNDTLLITSVKRRTGTIKKPMPTYQSTIASQMEGNKYKLLMRMSLADLDIIKAKDENVRRIINEVEKLREDVNTLTLISDHVAALHTQHAQLEELVRDMLHSLNRQLSERQNSDGQLCCMEITLNTANGPENLTIIFSKPDKRNQWEEIINDVKQKLCLYGHERPPPEFLSPVPIRKTRAGLQFTCAAPTLPPPGQSPDVWVCNSDGYVGQVCVLTLTPKLEVTSCNGVCNARILCVACVPPAPALTRQQTVDVPSTSSLSSTSSVKPGISISDPDDSCKNVRLDSSSSSDEEDDGSSSETQDAQSERSQDSARLLHCLARTLTPSHSKSLSTPHTGQNIQVHPVMKSSSNPAVDKQAMGISAGTLSSPASRQSSEDNATTANQPTMWLGTEDGCIHVYNCMDNIRIKKNKVKLQHNSGVHSIVFVEGKVFVALGNGDLVVYCRDIDGSWTERSTISVGTGSTPVSSMLLSGGKLWCATHASIKIINPHTLQVDETFQISSETKPISHMAVAGVTIWLSLHNAAQLRCYNTNTREQLAEINITPQVSKMLHGCDDIIRQHKAACLRVTALLAHRDMLWVGTSAGVLLTAPLLNAPNARTGVFTVPQLTGVTYGHTGHVRFLTIVENPVSTKQPPKSTQTSLKTKALSRRSANAEKLQKQAETGQTNKETLVISGGDGYEDFRSSTMTEDAGREDSTNHLLLWRV

Uniprot

A0A2A4J387 A0A1E1W746 A0A194Q1C2 A0A194R8S6 A0A212FH29 A0A182KBX0 + More
A0A2R5LFR4 B3P0G3 A0A1W4USU3 A0A0L7L6T2 A0A0Q9X9Z0 A0A1A8D983 A0A1A8QCD8 A0A1A8BUL1 A0A1A8IXR9 A0A1A8NBJ1 A0A1A8UC16 A0A1A8GKP3 A0A1A8KFG3 A0A3P8WVY8 A0A1U7RRS2 A0A151PJ61 E9I8Y0

Pubmed

26354079 22118469 17994087 26227816 24487278 22293439 + More
21282665

EMBL

NWSH01003291 PCG66607.1 GDQN01008280 JAT82774.1 KQ459582 KPI98789.1 + More
KQ460597 KPJ13904.1 AGBW02008549 OWR53046.1 GGLE01004220 MBY08346.1 CH954181 EDV48678.1 JTDY01002556 KOB71183.1 CH933806 KRG00691.1 HAEA01001438 SBQ29918.1 HAEI01004934 SBR91023.1 HADZ01006552 SBP70493.1 HAED01014848 SBR01293.1 HAEH01001211 SBR66445.1 HAEJ01004206 SBS44663.1 HAEC01003650 SBQ71727.1 HAEE01010359 SBR30409.1 AKHW03000111 KYO49098.1 GL761662 EFZ22993.1

Proteomes

UP000218220 UP000053268 UP000053240 UP000007151 UP000075881 UP000008711 + More
UP000192221 UP000037510 UP000009192 UP000265120 UP000189705 UP000050525

Pfam

PF00621 RhoGEF

Interpro

IPR035899   DBL_dom_sf        + More
IPR039917   ARHGEF17
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR011047   Quinoprotein_ADH-like_supfam
IPR000219   DH-domain
IPR039919   ARHGEF10/ARHGEF17
IPR011993   PH-like_dom_sf
IPR001331   GDS_CDC24_CS
IPR036322   WD40_repeat_dom_sf

SUPFAM

SSF48065   SSF48065        + More
SSF50998   SSF50998
SSF50978   SSF50978

Gene 3D

1.20.900.10 2.130.10.10 2.30.29.30

CDD

cd00160 RhoGEF

ProteinModelPortal

A0A2A4J387 A0A1E1W746 A0A194Q1C2 A0A194R8S6 A0A212FH29 A0A182KBX0 + More
A0A2R5LFR4 B3P0G3 A0A1W4USU3 A0A0L7L6T2 A0A0Q9X9Z0 A0A1A8D983 A0A1A8QCD8 A0A1A8BUL1 A0A1A8IXR9 A0A1A8NBJ1 A0A1A8UC16 A0A1A8GKP3 A0A1A8KFG3 A0A3P8WVY8 A0A1U7RRS2 A0A151PJ61 E9I8Y0

PDB

5N7E E-value=3.32026e-19, Score=237

KEGG

101739427 K20689 Rho guanine nucleotide exchange factor 17 | (RefSeq) rho guanine nucleotide exchange factor 1

GO

GO:0005089 GO:0035023 GO:0035556 GO:0005515 GO:0005007 GO:0005524 GO:0008284 GO:0008543 GO:0016021 GO:0004672 GO:0048384

PANTHER

PTHR12877:SF15 PTHR12877

Length:

956

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.29498

Exp number, first 60 AAs:

0.00357

Total prob of N-in:

0.00044

outside

1 - 956

Pi

264.255934

Theta

178.905041

Tajima's D

0.592321

CLR

101.335138

CSRT

0.542072896355182

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics