SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03839
Annotation
PREDICTED:_uncharacterized_protein_LOC106127801?_partial_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 2.347
 

Sequence

CDS
ATGTCGGTGTCCTACATTCGCGGGAAGGTGACTAGTGAGCTCCGATGGTTCGCATCAGCTCATGCTTTGGTTGACAGAACGGATAGGGATGCGGCATTGCTCGATAGGGCGTCTCAGGTGCACGAACGGTTGGAGGTAGTGTACGATCGGTTGTCTGACCTCGTTGCTTTGGGGTCCGAAGTGGAGAAGGAGGTGATCCATGCCATCGGTCTTGACGTGGACCAGTGTCAGGAGTACGCTGATGCCATTCTGCAACGGGTGGCCGATATTAAGAAGCAGTCGTCATCCGGTGGTAATGGAGGTTCGGGAACTACGTCAGGCGTCATATCGCGCCTCCCCTCCATCGACCTGCCGATCTTCCACGGTGATCTGAACGAGTGGGTCGGCTTTATAAATTTGTTTGACAGCCTGGTCCATGGTCGGTCGGACTTGACTGCCTCTTATAAGATGGCTCAGCTTCGGGGTGCTCTGCGAGGTGAACCTGGTGAATTGGTGGCACACTTGCCTATCACCAACGACAATTATGCGGTCGCACGCCAGATCCTGTTCGACCGATATCAAAATCAACGACGGTTGGTAGACGCTCAGCTGGCCAGGCTGTTTGCGATACCCAAACTTTCTCGGGCGTCCGATATCAGAACCGAGGTACTGAATCCAGTTACGGTGGCCACTAAGGCCTTGGGCAATTTGGGTCTACCAGTAGACCAATGGTCATATCTGCTCTTTTATATTGTTGCAGGTAGGCTGCCGGTTGAGGTGCTCACTCGCTTCGAGCAGCAGGACAACGCAGGTAGGGACGAACTGCCTACCCTGGCCAATCTGCTGGCATTTTTAGAAGGCGAAAGTCGCAGACACGAGATTATGCCACCACCCTCCTCCTCTGGGTCGCGTGTGCCGGCTTCCGGCCACGCCGTTTCGGTTGCTCAGAGGGGAGGGGGAGGGGATAAGAGGGGGCCGTCTCAACGACTGACTGCGCTCATGGCAGCGGTGGGAGGCCCACGGTGTGCCTTCTGTCATGAGAGCGGGCACGACGTAGCCGCCTGTCCGAGGTTCCGGTCGACGCGCATCAGGGGTAGACGCAACATCGTTGCCCAGCGGCGATGGTGCTTTTTTTGTTTTGGGCCGCACACGGCGAGCGTCTGTCCACAGCCACAATTGTGCCCTAATTGCGACGGTCGGCACCATGCCCTCCTGTGTCTGGAGTCTGCCGCCACTCCGAGGTCATCCGGACGCAGTCATCCAGCCTCGCCGACCGGTGAGCGCACCGGTCGTAGCCCTCGCCAATTCGGCGGCGTGGACCCTCGGGAAGAGGCTTCGCAGGGAGGCGCCGGGTTAGGTACTGCGGGCGGGTGCCAGCGGATGCCCACTAGCTACGCCGGGGTGGCCACGTTGTCCCCCCGTGCGGGGCCGTGTTCGCCGGCTGGATCGAGTAGCCCTGCTCACTCGTCTCCCCTTCCCTCAGAAGTACGGTTTTCCCCTCCGCTGAGGGAGCGGCCGACGCTGGAGCGACTCCCTCCAGTGTTTGGCCCGTTTGGCCATCGTACACGGAGGTATATGAGGCGGGACGGGAAACGAGGGCCTTATGTGGGAGCGTGGGATCCGTTGGCACGCTACGACCTTCCGTCGCGCGCCGACCGGGATAGCGGGGACCCGGGCCCCCGCTAG
Protein
MSVSYIRGKVTSELRWFASAHALVDRTDRDAALLDRASQVHERLEVVYDRLSDLVALGSEVEKEVIHAIGLDVDQCQEYADAILQRVADIKKQSSSGGNGGSGTTSGVISRLPSIDLPIFHGDLNEWVGFINLFDSLVHGRSDLTASYKMAQLRGALRGEPGELVAHLPITNDNYAVARQILFDRYQNQRRLVDAQLARLFAIPKLSRASDIRTEVLNPVTVATKALGNLGLPVDQWSYLLFYIVAGRLPVEVLTRFEQQDNAGRDELPTLANLLAFLEGESRRHEIMPPPSSSGSRVPASGHAVSVAQRGGGGDKRGPSQRLTALMAAVGGPRCAFCHESGHDVAACPRFRSTRIRGRRNIVAQRRWCFFCFGPHTASVCPQPQLCPNCDGRHHALLCLESAATPRSSGRSHPASPTGERTGRSPRQFGGVDPREEASQGGAGLGTAGGCQRMPTSYAGVATLSPRAGPCSPAGSSSPAHSSPLPSEVRFSPPLRERPTLERLPPVFGPFGHRTRRYMRRDGKRGPYVGAWDPLARYDLPSRADRDSGDPGPR

Summary

Pfam
PF05585   DUF1758        + More
PF17921   Integrase_H2C2
PF18701   DUF5641
PF00665   rve
PF05380   Peptidase_A17
PF00078   RVT_1
PF03564   DUF1759
Interpro
IPR041588   Integrase_H2C2        + More
IPR036397   RNaseH_sf       
IPR005312   DUF1759       
IPR000477   RT_dom       
IPR040676   DUF5641       
IPR008737   Peptidase_asp_put       
IPR001878   Znf_CCHC       
IPR012337   RNaseH-like_sf       
IPR008042   Retrotrans_Pao       
IPR001584   Integrase_cat-core       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
SUPFAM
SSF53098   SSF53098       
Gene 3D
ProteinModelPortal

Ontologies

Topology

Length:
554
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01445
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00271
outside
1  -  554
 
 

Population Genetic Test Statistics

Pi
196.281811
Theta
195.513516
Tajima's D
-0.595228
CLR
225.54322
CSRT
0.218239088045598
Interpretation
Uncertain
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