Gene

KWMTBOMO03833  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010004

Annotation

syntaxin_[Bombyx_mori]

Location

Bomo_Chr7(-):3440130-3440979      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.537

CDS

ATGTCAGAACGAGAACCAATTAATGGTTCAGGGCGAGACTATGGAGCCACAGCCTCTGTGCCGGCTGTGGGCTTTGCAGATTTCAGTCCAACGGAACTCTACAATTTGAGTGAGGGCATCGCAGAGAATGTCAATACGATTAACAGTGGACTACTGTCGCTTGAGAAGATGATGAAGCAAATCGGTGGCCCAAATGATAGCGTCCAACTTAGAGATAAAATGTAA

Protein

MSEREPINGSGRDYGATASVPAVGFADFSPTELYNLSEGIAENVNTINSGLLSLEKMMKQIGGPNDSVQLRDKM

Similarity

Belongs to the syntaxin family.

Uniprot

Q1HPH0   H9JKF3   A0A2A4JKA8   A0A2H1WV58   A0A194QD83   A0A194QZ32   + More
A0A437B9F8   A0A1E1VXP0   A0A212EJ65   S4PD96   A0A1A9VWC7   A0A1B0GD27   A0A1A9ZA37   A0A067RLD3   A0A2J7PQ42   A0A1A9WGB3   A0A1A9Y3D6   A0A1B0BCH5   E2C0V8   A0A2P8Z5T7   T1PH92   B4J0S1   A0A232ERJ0   B4LC11   A0A1I8N0A2   A0A1I8P011   W8CAY1   A0A1L8EI63   A0A1B6GFX6   A0A026W268   A0A1W4VIY8   B4HGP1   B4QIZ1   A0A0M9A5J7   E2AKD8   A0A2A3EM18   U5EIB6   A0A0A1WS00   A0A0K8UVU1   A0A034WWI3   A0A0C9RSY3   B4GS63   Q2M037   A0A1L8DUJ9   B4PHB9   A0A0J7KJY0   A0A1L8DUJ4   A0A0K8TNL4   V9IHS1   A0A2A3EKJ8   A0A088A431   A0A154NW01   A0A1B0DKU0   Q9VU45   B3MAZ2   A0A151ID19   A0A158N9M4   B3NCZ1   A0A0L0CFB2   A0A151ISU6   A0A0L7R603   A0A1B6DV26   A0A195BNJ9   F4WTR4   A0A195F9E4   A0A1B6LMN7   B0X748   A0A3B0JSU3   A0A0P4VT18   A0A3B0J4G4   A0A151XGT0   A0A069DRT5   A0A224XUE1   A0A0V0GD30   A0A336MRT9   R4V148   A0A084VBY0   B4KZS1   A0A1Q3FD80   B4MLZ1   Q16VZ6   A0A182QP07   A0A182NPP4   A0A0P4W7A0   A0A182PEJ2   A0A182M4P8   A0A182R4F5   A0A182JVR5   A0A182WED4   A0A1Q3FDR9   W5J6K3   A0A023EMU8   A0A182G2N5   A0A182JG91   A0A023EPB0   A0A182YL49   A0A182SZ69   A0A1D2NIX5  

Pubmed

19121390    26354079    22118469    23622113    24845553    20798317    + More
29403074    17994087    28648823    18057021    25315136    24495485    24508170    30249741    22936249    25830018    25348373    15632085    23185243    17550304    26369729    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    21347285    26108605    21719571    27129103    26334808    24438588    17510324    20920257    23761445    24945155    26483478    25244985    27289101   

EMBL

DQ443432    ABF51521.1    BABH01024910    BABH01024911    NWSH01001172    PCG72259.1    + More
ODYU01011304    SOQ56955.1    KQ459167    KPJ03503.1    KQ460930    KPJ10717.1    RSAL01000112    RVE47022.1    GDQN01011610    GDQN01001128    JAT79444.1    JAT89926.1    AGBW02014515    OWR41543.1    GAIX01007595    JAA84965.1    CCAG010002291    KK852442    KDR23848.1    NEVH01022640    PNF18454.1    JXJN01012002    GL451850    EFN78394.1    PYGN01000183    PSN51863.1    KA647263    AFP61892.1    CH916366    EDV97926.1    NNAY01002583    OXU20993.1    CH940647    EDW69811.1    KRF84596.1    GAMC01000954    JAC05602.1    GFDG01000454    JAV18345.1    GECZ01008440    JAS61329.1    KK107502    QOIP01000014    EZA49691.1    RLU14882.1    CH480815    EDW41349.1    CM000363    CM002912    EDX10322.1    KMY99358.1    KQ435737    KOX76906.1    GL440262    EFN66080.1    KZ288219    PBC32246.1    GANO01002692    JAB57179.1    GBXI01012478    JAD01814.1    GDHF01021661    GDHF01005359    JAI30653.1    JAI46955.1    GAKP01000794    JAC58158.1    GBYB01011740    JAG81507.1    CH479188    EDW40598.1    CH379069    EAL31099.1    KRT07868.1    KRT07869.1    GFDF01003981    JAV10103.1    CM000159    EDW94380.1    LBMM01006279    KMQ90743.1    GFDF01003980    JAV10104.1    GDAI01001875    JAI15728.1    JR046479    AEY60202.1    PBC32247.1    KQ434772    KZC03865.1    AJVK01016112    AJVK01016113    AE014296    AY069551    AAF49845.1    AAL39696.1    AGB94487.1    CH902618    EDV40258.1    KQ977991    KYM98304.1    ADTU01009698    CH954178    EDV51647.1    JRES01000484    KNC30930.1    KQ981064    KYN09906.1    KQ414648    KOC66249.1    GEDC01016353    GEDC01007809    JAS20945.1    JAS29489.1    KQ976428    KYM87797.1    GL888344    EGI62379.1    KQ981727    KYN36674.1    GEBQ01014985    JAT24992.1    DS232438    EDS41742.1    OUUW01000002    SPP76426.1    GDKW01000247    JAI56348.1    SPP76427.1    KQ982169    KYQ59511.1    GBGD01002503    JAC86386.1    GFTR01004703    JAW11723.1    GECL01000374    JAP05750.1    UFQT01002152    SSX32780.1    KC571868    AGM32367.1    ATLV01009822    KE524548    KFB35474.1    CH933809    EDW19027.1    GFDL01009520    JAV25525.1    CH963847    EDW73202.1    CH477579    EAT38717.1    AXCN02001655    GDRN01080729    GDRN01080728    JAI62150.1    AXCM01001368    GFDL01009407    JAV25638.1    ADMH02001980    ETN60092.1    GAPW01002911    JAC10687.1    JXUM01139743    KQ568947    KXJ68828.1    GAPW01002767    JAC10831.1    LJIJ01000028    ODN05201.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000283053    UP000007151    + More
UP000078200    UP000092444    UP000092445    UP000027135    UP000235965    UP000091820    UP000092443    UP000092460    UP000008237    UP000245037    UP000001070    UP000215335    UP000008792    UP000095301    UP000095300    UP000053097    UP000279307    UP000192221    UP000001292    UP000000304    UP000053105    UP000000311    UP000242457    UP000008744    UP000001819    UP000002282    UP000036403    UP000005203    UP000076502    UP000092462    UP000000803    UP000007801    UP000078542    UP000005205    UP000008711    UP000037069    UP000078492    UP000053825    UP000078540    UP000007755    UP000078541    UP000002320    UP000268350    UP000075809    UP000030765    UP000009192    UP000007798    UP000008820    UP000075886    UP000075884    UP000075885    UP000075883    UP000075900    UP000075881    UP000075920    UP000000673    UP000069940    UP000249989    UP000075880    UP000076408    UP000075901    UP000094527   

PRIDE

Q1HPH0    H9JKF3    Q9VU45   

Pfam

PF14523   Syntaxin_2        + More
PF05739   SNARE
PF09495   DUF2462

Interpro

IPR000727   T_SNARE_dom        + More
IPR006011   Syntaxin_N       
IPR010989   SNARE       
IPR006012   Syntaxin/epimorphin_CS       
IPR001388   Synaptobrevin       
IPR019034   UPF0390       

SUPFAM

SSF47661   SSF47661       

ProteinModelPortal

Q1HPH0   H9JKF3   A0A2A4JKA8   A0A2H1WV58   A0A194QD83   A0A194QZ32   + More
A0A437B9F8   A0A1E1VXP0   A0A212EJ65   S4PD96   A0A1A9VWC7   A0A1B0GD27   A0A1A9ZA37   A0A067RLD3   A0A2J7PQ42   A0A1A9WGB3   A0A1A9Y3D6   A0A1B0BCH5   E2C0V8   A0A2P8Z5T7   T1PH92   B4J0S1   A0A232ERJ0   B4LC11   A0A1I8N0A2   A0A1I8P011   W8CAY1   A0A1L8EI63   A0A1B6GFX6   A0A026W268   A0A1W4VIY8   B4HGP1   B4QIZ1   A0A0M9A5J7   E2AKD8   A0A2A3EM18   U5EIB6   A0A0A1WS00   A0A0K8UVU1   A0A034WWI3   A0A0C9RSY3   B4GS63   Q2M037   A0A1L8DUJ9   B4PHB9   A0A0J7KJY0   A0A1L8DUJ4   A0A0K8TNL4   V9IHS1   A0A2A3EKJ8   A0A088A431   A0A154NW01   A0A1B0DKU0   Q9VU45   B3MAZ2   A0A151ID19   A0A158N9M4   B3NCZ1   A0A0L0CFB2   A0A151ISU6   A0A0L7R603   A0A1B6DV26   A0A195BNJ9   F4WTR4   A0A195F9E4   A0A1B6LMN7   B0X748   A0A3B0JSU3   A0A0P4VT18   A0A3B0J4G4   A0A151XGT0   A0A069DRT5   A0A224XUE1   A0A0V0GD30   A0A336MRT9   R4V148   A0A084VBY0   B4KZS1   A0A1Q3FD80   B4MLZ1   Q16VZ6   A0A182QP07   A0A182NPP4   A0A0P4W7A0   A0A182PEJ2   A0A182M4P8   A0A182R4F5   A0A182JVR5   A0A182WED4   A0A1Q3FDR9   W5J6K3   A0A023EMU8   A0A182G2N5   A0A182JG91   A0A023EPB0   A0A182YL49   A0A182SZ69   A0A1D2NIX5  

KEGG

733046    no KO assigned | (RefSeq) syntaxin

GO

GO:0016020   GO:0016192   GO:0006886   GO:0005484   GO:0005623   GO:0016021   GO:0007140   GO:0007143   GO:0000278   GO:0005886   GO:0031201   GO:0006906   GO:0098793   GO:0016081   GO:0000149  

Length:

74

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02247

Exp number, first 60 AAs:

0.02247

Total prob of N-in:

0.29867

outside

1  -  74

 

 

Pi

310.277292

Theta

188.95792

Tajima's D

1.674793

CLR

0

CSRT

0.829158542072896

Interpretation

Uncertain