Silkworm Genome Informatics Database

Gene

KWMTBOMO03832 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010004

Annotation

PREDICTED:_syntaxin_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr7(-):3433481-3437979 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.744

CDS

ATGCCCAAACCGGCACGCGTGAGAAACGATCCACAGCTGTTGGAGCAGCAAGCGATGGCTGACGACGAGGAATCGGCTGCTTTAGCTCAGCAACAAGCTCAGGCCCGTCTCGTTGAGTTTGAAACGAGCATGCTGCTTGAGCGAGAAGCCTACATGAACAAAATAGAAGCTGACGTTTTGGACGTTAACCAAATAATGTCTGATCTGGCGAAGATGGTGAATCAGCAAGCCCAGACCGTCGACACGGTGGAGACCCACATAGAGGCGGTGGGAGCGAACGTCGAGGCCGGGGTCGATGAACTCGCTAAAGCAGCCGAACACCAACGCAGGTACCGGAGGAAAATGTTCATATTAATTATCATAGGCGCGATTCTTGCTATTGTCTTCATTGTGTGGGTAGTCAAAGCCTTCAAGTAG

Protein

MPKPARVRNDPQLLEQQAMADDEESAALAQQQAQARLVEFETSMLLEREAYMNKIEADVLDVNQIMSDLAKMVNQQAQTVDTVETHIEAVGANVEAGVDELAKAAEHQRRYRRKMFILIIIGAILAIVFIVWVVKAFK

Similarity

Belongs to the syntaxin family.

Uniprot

H9JKF3 A0A1E1VXP0 A0A2A4JKA8 A0A212EJ65 A0A2H1WV58 A0A437B9F8 + More
A0A194QD83 A0A194QZ32 R4WD46 A0A1D2NIX5 A0A0M9A5J7

Pubmed

19121390 22118469 26354079 23691247 27289101

EMBL

BABH01024910 BABH01024911 GDQN01011610 GDQN01001128 JAT79444.1 JAT89926.1 + More
NWSH01001172 PCG72259.1 AGBW02014515 OWR41543.1 ODYU01011304 SOQ56955.1 RSAL01000112 RVE47022.1 KQ459167 KPJ03503.1 KQ460930 KPJ10717.1 AK417383 BAN20598.1 LJIJ01000028 ODN05201.1 KQ435737 KOX76906.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000283053 UP000053268 UP000053240 + More
UP000094527 UP000053105

PRIDE

H9JKF3

Pfam

PF14523 Syntaxin_2 + More
PF05739 SNARE

Interpro

IPR000727   T_SNARE_dom        + More
IPR006011   Syntaxin_N
IPR006012   Syntaxin/epimorphin_CS
IPR010989   SNARE

SUPFAM

SSF47661 SSF47661

ProteinModelPortal

H9JKF3 A0A1E1VXP0 A0A2A4JKA8 A0A212EJ65 A0A2H1WV58 A0A437B9F8 + More
A0A194QD83 A0A194QZ32 R4WD46 A0A1D2NIX5 A0A0M9A5J7

PDB

2NPS E-value=6.17103e-08, Score=129

KEGG

733046 no KO assigned | (RefSeq) syntaxin

GO

GO:0006886 GO:0016192 GO:0005484 GO:0005623 GO:0016021 GO:0005515 GO:0016020 GO:0008270 GO:0004812 GO:0043039 GO:0042555 GO:0048384

Length:

138

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

19.92315

Exp number, first 60 AAs:

0

Total prob of N-in:

0.98006

inside

1 - 114

TMhelix

115 - 134

outside

135 - 138

Pi

202.944392

Theta

134.869404

Tajima's D

0.968999

CLR

0.059639

CSRT

0.654717264136793

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics