Silkworm Genome Informatics Database

Gene

KWMTBOMO03830

Pre Gene Modal

BGIBMGA010005

Annotation

hypothetical_protein_KGM_08958_[Danaus_plexippus]

Location

Bomo_Chr7(-):3412814-3416939 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.551

CDS

ATGGCGCACGGGCAGTTCAGAACCACGTCTCTGTACTACTGGACACTTGCAGATAACGTTGTTGGTGTCATAATGTCAGAGGCGTACGCCCGCGAGATACTACGGAGGAATGTTGCGCAAATATGCCAAACTATAGGATGGAACGGCATAAACTCAACGCCACTTGACATTTTGGTACATGTACTGGAGAAATATATCAAAACCCTTGGCATCCAAGCCAGTAGGCATGCTGAACAATTTAATAGGACTGAACCAAATTTACATGACTTAGGATTAGTATTCCGTGACCTTAATGTGAATTTGCCGGAGCTTGCTGAATATGTGCGTTGTGTACCTCCTGTTCCACCTCCAGTAAACTCTGTTAAATTCCCAAAACCGAAAGAATCGAACTTAAACTTCTTAAAACCAGGAAGTCATGAAGTTGTCACAAGGCCCATGCACGTGCATGAGCATCTGCCTCCTATGTATCCAGAGAAAGAGAGAGACACACCGGCTGTTGCAGGCACTATTGAAATACATCAAAATGGTATTGATAATGTCACTAGCAATAATACCATATGTACAAGTCCAGAAATATCTGTCACAGACAGTCCTGAGAAATCAAAGGAAATTTTTAAGAGACCAATTGATCCTGTTTCTTTACCTAATAGTAAAAGGCCACGGTTACGCTTAGAGGAAGAGGAGAGAACGAGAGAAATAAGTAGTGTGATGATGACCATGTCTGGTTTTCTGTCACCAGCCCGTGAAGGTAAACTTCCCGAAGCCCGTCCTCCTACAATTATAGCAGAAAAGCACTTTGAAAAGCACAAAGTTAATTCTCATACAAATGTAACTAAACCTCCAATTTTAGAAAAAGTTGATAAGAAATCTAAGAAAAATAAATTACCTAATGGTAAAATTATGAAGAGTAAAAGAAAAGATAAACATAAGAGTGAAAGTGGTAAAAATAAGGACAGTAATAAATTAAATAAATTTCCTCCTGGTTATCCTGTAAAAAGTAAGGATGTGCAGCCCAGACACCATAATCATATAACTATGCCAGCGCCTGAAGCTGCCCCTCCACCTCCTCCTTCAAGAGCAAAGATGGCACCTCCTCCTGCACTGGTGCCTATTCCAGAGCCAGTAAAACCTGTCATAAAACAGGAACCATTGGATCCTCCGTCACCAATATCCAGAAGGCTTTCTGTTGAAGATGCAATACCGGTCCCTAGAAAAATTCCAATCTCATTATCTCCTCTAGTATCTAATTCCATCACCACACCTAAACAGCAGTCTATGAGTAATTCTCTCATTCCTCACACTGAAATAAAGAGAGAAGTTTTAGATGAAGATGAGAAATTGGCCTCTCAACCTGATAAATCAAAGATTAATATATTTAAGAGAATAACGAACAAATCAAAAGAAGATAAGACTACTCCAGAGGTTGTAAATGATAAAGTAAATCTTGATGCTACTATTTCAAGGTTGCAAAATGCATCACATCAAAATTCAGTTCATAAGTCAAATGAAAATGCAAGAATGAAATCTGAAGTGATAGACCAAATTGTGAACAATAATGACGATAGTGCTGTAGATTTGTCTAAAGTGATGGATTTAAGAAGTAATGAAGTGATTAATATTGATGAGGATTCTTTGGACAGAAACCCTACACCACAGCAAAGACAACTACTGGAATCTAAACCTAATATATCAATCAACAAGTCCTTACAAACCCCTTTTCCCAAAGATCTACCGAGTGTTAGTCCTAAAGTTAAAAAAGAGAAAAAACACAAAGACAAGAAAGATAAAGCAGCAAAATTAGAAGCTAAATTGTTGAAGAAGCAACAACAACAATTAGCCTATGAAATGGCACAAGCTGAAAAGCAAAGTATGAAATTGGCTGGAATGAAACAACATAAAATCAGTAGACAGAAAAATGAATCAAAATTGCCACAAATGCCAGCTGGTTTTCCATTTTTTCATACAATGCCACCTGGAAGAGGTCTTATGCCCGGCCCTGGTCTCATCCCGAACCCTGGATTGATACCAGGAAGTGAATTCTTCACTGGTCTAGCAAACAATCCAGCACTAAGAGGTATGCCACCCTGTAATTTATTAAACAATCCATTTGCTTTGGGAACCAGTGGTCCTGGTCTCATTCCTGGTCCTAGTTTCTTACCTGGAGGCTTGAATTCTCCTCTGATGCCTATGGGAAATTTTGCCCAATCATCGAGATCTTCTTCCGTTAAAATACCACCAATGCTCCGTCGACCGAGTTTGGAGGTAATAGCAGTAGAAAATGATGAGGACAGAGGTATTCATAAGTCTTCAATGAATCGTGAAAAGGACCGCCACGATAAGCACAAATCTCAGACCATTCCAAATATATTACAGAAACACAAGTCTAAGTCGCATAAGGATCACAAGGCTAATTTGTTCAAAATGCCTCTTGTACAACCAGACATAACAATTGAACTGAATCCTCCGAAATCAGAAGCCAGGCCTGTAGGACCTACGCCACCAATACCTCCACGTGTGCCTATCTCCAAGCCTGATCCTGAATCTGAACCGGTAAGGGAAATGCCTCCCGTCAGGATGGCTACACCGGATTCTATTCTAGAAAAAGACACCGAAAACACAGATAAAAAGAAGGATAAATCCCATAAAAAAGAAAAGAAAGACAAAGATGGTGTAAAAATTAAAAAGAAGAAAGATAAAAAGGACAAAAACAAAGATAAGTCTGAGAAAAAGCGCGATAAAGAAGAAAAACAAGAATTAAAAGATAAAATAAAAAAAGAAAAGAAAGAGAAGAAAAAAGATAAAATTGGCGATGGTCTTGTTCCGAAATTGACGTTGAAAATAAGTTCTTCAAATTCTAATTCACCTATGCCACCAAGCTCGCCCGATACTTTCAAATTAAATATAAAACCTGTAGTGAAGAAAGAAGAAGAGGACAGTCCAGTAAAAGACGAACCTTTGTCCAGGGAGCACAGTCGTTCGCCTGAGTTAGCTCAGATTTCGGCTCTCGTTACTAGACCACCCAAACAAAAACATTCTAAACACAATCACCTCGCAGACGGAGAGCCTCAGCCCTCGCCGCCCCCCTCGGGCAGCTCACCGCCCGAGAAGGGCACGCCCTCGAGTCATTCGAAATACAAAAGGATATTGTTCAAGCCGTTGGCGAAGAAGGGCCACGAGCACTTTGAAGACGAAATCGCAACGTTGTCTGAGGAACCGGCCGTGGCGCCGGCACCCGCCCCCGCCCCGCCCCCCGACACTAAGCTCGAACCCCTCCCTACCCCTTATTATGTTGATGAACAGGGCAACAAAATATGGGTTTGTCCGGCGTGCGGCAGACCGGACAACGGTTCGCCGATGATCGGCTGCGACGGATGCGATGGCTGGTACCACTGGGTGTGCGTGGGCATCACGGAGGAGCCGGGCGCCACGGAGGACTGGTTCTGCAAGTCGTGTATCGCGAAGCGCGCCGCGATGGCGCTCGCCGGCGTCACTTCCGGCAAGAAAAGAGGCCGGAAACCCAAAGGGGAAAAAATCAGAGACTGTCATTAA

Protein

MAHGQFRTTSLYYWTLADNVVGVIMSEAYAREILRRNVAQICQTIGWNGINSTPLDILVHVLEKYIKTLGIQASRHAEQFNRTEPNLHDLGLVFRDLNVNLPELAEYVRCVPPVPPPVNSVKFPKPKESNLNFLKPGSHEVVTRPMHVHEHLPPMYPEKERDTPAVAGTIEIHQNGIDNVTSNNTICTSPEISVTDSPEKSKEIFKRPIDPVSLPNSKRPRLRLEEEERTREISSVMMTMSGFLSPAREGKLPEARPPTIIAEKHFEKHKVNSHTNVTKPPILEKVDKKSKKNKLPNGKIMKSKRKDKHKSESGKNKDSNKLNKFPPGYPVKSKDVQPRHHNHITMPAPEAAPPPPPSRAKMAPPPALVPIPEPVKPVIKQEPLDPPSPISRRLSVEDAIPVPRKIPISLSPLVSNSITTPKQQSMSNSLIPHTEIKREVLDEDEKLASQPDKSKINIFKRITNKSKEDKTTPEVVNDKVNLDATISRLQNASHQNSVHKSNENARMKSEVIDQIVNNNDDSAVDLSKVMDLRSNEVINIDEDSLDRNPTPQQRQLLESKPNISINKSLQTPFPKDLPSVSPKVKKEKKHKDKKDKAAKLEAKLLKKQQQQLAYEMAQAEKQSMKLAGMKQHKISRQKNESKLPQMPAGFPFFHTMPPGRGLMPGPGLIPNPGLIPGSEFFTGLANNPALRGMPPCNLLNNPFALGTSGPGLIPGPSFLPGGLNSPLMPMGNFAQSSRSSSVKIPPMLRRPSLEVIAVENDEDRGIHKSSMNREKDRHDKHKSQTIPNILQKHKSKSHKDHKANLFKMPLVQPDITIELNPPKSEARPVGPTPPIPPRVPISKPDPESEPVREMPPVRMATPDSILEKDTENTDKKKDKSHKKEKKDKDGVKIKKKKDKKDKNKDKSEKKRDKEEKQELKDKIKKEKKEKKKDKIGDGLVPKLTLKISSSNSNSPMPPSSPDTFKLNIKPVVKKEEEDSPVKDEPLSREHSRSPELAQISALVTRPPKQKHSKHNHLADGEPQPSPPPSGSSPPEKGTPSSHSKYKRILFKPLAKKGHEHFEDEIATLSEEPAVAPAPAPAPPPDTKLEPLPTPYYVDEQGNKIWVCPACGRPDNGSPMIGCDGCDGWYHWVCVGITEEPGATEDWFCKSCIAKRAAMALAGVTSGKKRGRKPKGEKIRDCH

Uniprot

H9JKF4

Pubmed

19121390

EMBL

BABH01024908

Proteomes

UP000005204

PRIDE

H9JKF4

Pfam

PF07524 Bromo_TP + More
PF00628 PHD

Interpro

IPR013083   Znf_RING/FYVE/PHD        + More
IPR001965   Znf_PHD
IPR019787   Znf_PHD-finger
IPR011011   Znf_FYVE_PHD
IPR006565   BTP
IPR009072   Histone-fold
IPR019786   Zinc_finger_PHD-type_CS

SUPFAM

SSF57903 SSF57903

Gene 3D

1.10.20.10 3.30.40.10

ProteinModelPortal

H9JKF4

PDB

5C13 E-value=5.50514e-19, Score=236

KEGG

101745654 K14650 transcription initiation factor TFIID subunit 3 | (RefSeq) transcription initiation factor TF

PATHWAY

03022 Basal transcription factors - Bombyx mori (domestic silkworm)

GO

GO:0046982 GO:0005669 GO:0046872 GO:0005515 GO:0008270 GO:0006508 GO:0016020 GO:0016021 GO:0004812 GO:0043039 GO:0042555 GO:0048384

Length:

1182

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.72689

Exp number, first 60 AAs:

0.72336

Total prob of N-in:

0.03688

outside

1 - 1182

Pi

242.623626

Theta

183.468164

Tajima's D

-0.43546

CLR

0.274058

CSRT

0.257487125643718

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics