Gene

KWMTBOMO03804

Pre Gene Modal

BGIBMGA010013

Annotation

PREDICTED:_single-minded_homolog_2_[Bombyx_mori]

Location

Bomo_Chr7(-):2097733-2100643      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.752

CDS

ATGATTAATGTTGGTTTTGCATTTTTTATTGCAGTCTTAAAAACTGGTGCTTCCGGAATGATCGCGTATCGCTTCCAGACCAAGGAGGGACAATGGCAGTGGCTTCAGACCTCCTCCAGGCTAGTCTACAAGAACTCCAAACCTGATTTCGTTATCAGCACGCATCGGCCGCTGATGGAAGAGGAAGGTCGAGATTTGCTCGGCAAAAGGACAATGGACTTCAAAGTCAGCTACCTGGACACAGGACTCACGAGTCTGTACTTTTCCGAGACGGAACAGCTGTCAGGCTGCGAAACTAATGTCACCACCCCTCCCAGAACTACGAGGAGATACAAGACCCAACTCAGAGACTTTCTCTCCACCTGCCGCAACAAGAGACGAGTCCCAAGCACACCAGCCCCCCCACCCGTGGACTACTTGGCGGCTGATGCTGTCGCCGCGGCCTATACTAACTTGAACGGCGCGTACACGGCTCCCTACGGAGAATACCCGCCGGCCCCTATCCACTACGCTCCACCGCCTTTAGACGACCGGTTCATAACAACAGACAACATCTTCCATCAATACAAGCCCTTGTCCTACCATTACACTCCGTACGCGCCGAACGGCTTCCTCGAGCCGGCTCCTCCGCCAGGGTACGAGGTCGCTCCGGCGTACCATCGGCCTCCTTCCAGAGAGTATGCGTACGTGGACAGCAGCGGGAGGTACATGAGTCCGGTCACTGGGCAGGAGAGGCGGTCGCCGAGTGTGGTGCCGGGGCCCAGCCCTGCGGGGTCGAGCGGGTCGGCGGAGCAAGATCGGCTGCAGCCCGAGGCTCCGCGCCAGACGGTGCTGATGTGGGGCGCCGGGTCGGCCGCGCCCGCCGCCACTGACGCGCCGCTGGAGTACTCGCCCCCTCAGGTTTGGCGCTACCACCCCTCGCATTACCACACCGCTGAAGCGACCCAGTGA

Protein

MINVGFAFFIAVLKTGASGMIAYRFQTKEGQWQWLQTSSRLVYKNSKPDFVISTHRPLMEEEGRDLLGKRTMDFKVSYLDTGLTSLYFSETEQLSGCETNVTTPPRTTRRYKTQLRDFLSTCRNKRRVPSTPAPPPVDYLAADAVAAAYTNLNGAYTAPYGEYPPAPIHYAPPPLDDRFITTDNIFHQYKPLSYHYTPYAPNGFLEPAPPPGYEVAPAYHRPPSREYAYVDSSGRYMSPVTGQERRSPSVVPGPSPAGSSGSAEQDRLQPEAPRQTVLMWGAGSAAPAATDAPLEYSPPQVWRYHPSHYHTAEATQ

Uniprot

H9JKG2   A0A2H1VMP2   A0A2A4IUM1   A0A194QJ55   A0A194RJK7   A0A437B5L2   + More
A0A212FP39   A0A0L7L2E5   T1HJL0   A0A1B6KR57   D6X498   A0A0K8SCA6   A0A0K8SC85   E0VM01   N6UTD4   A0A2P8YY46   U4UA23   A0A195CJ67   F4X3J1   A0A151X8Y1   A0A158NRN3   A0A195DG42   A0A154P7Y0   A0A195BN99   A0A3L8D8Y9   A0A088AS43   E2BTU8   A0A195EX44   A0A2P0ZDR0   A0A0J7KI63   A0A0L7RHK2   A0A026WIZ9   Q16NY1   Q16NX9   A0A2S2NK70   W8BB95   E2A8E6   W8C7E1   A0A0K8VWR4   A0A1B0EWW8   A0A0K8V699   A0A336MWK5   A0A336MPL7   J9K681   A0A0L0CJY5   A0A1A9WH34   A0A1A9VVZ4   A0A1B0C1F0   A0A1A9XFH6   A0A3Q8ECM0   B3M2J3   B4GFM2   I5APE8   Q295V9   A0A1W4U783   O61543   A0A0R1E7K0   Q9VEV9   E1JIM6  

Pubmed

19121390    26354079    22118469    26227816    18362917    19820115    + More
20566863    23537049    29403074    21719571    21347285    30249741    20798317    26453233    24508170    17510324    24495485    26108605    17994087    15632085    23185243    9573046    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

BABH01024810    ODYU01003395    SOQ42099.1    NWSH01006406    PCG63465.1    KQ459167    + More
KPJ03486.1    KQ460118    KPJ17737.1    RSAL01000151    RVE45738.1    AGBW02003901    OWR55497.1    JTDY01003381    KOB69643.1    ACPB03007057    GEBQ01026067    JAT13910.1    KQ971410    EEZ97710.2    GBRD01014908    JAG50918.1    GBRD01014909    JAG50917.1    DS235283    EEB14407.1    APGK01017031    APGK01017032    KB739995    ENN82022.1    PYGN01000291    PSN49162.1    KB632192    ERL89872.1    KQ977649    KYN00770.1    GL888613    EGI59019.1    KQ982409    KYQ56789.1    ADTU01024195    ADTU01024196    ADTU01024197    ADTU01024198    ADTU01024199    ADTU01024200    ADTU01024201    ADTU01024202    ADTU01024203    ADTU01024204    KQ980886    KYN11812.1    KQ434839    KZC08036.1    KQ976439    KYM86676.1    QOIP01000011    RLU16602.1    GL450531    EFN80847.1    KQ981931    KYN32798.1    KY780367    AVH78507.1    LBMM01007224    KMQ89929.1    KQ414590    KOC70299.1    KK107182    EZA55973.1    CH477803    EAT36061.1    EAT36063.1    GGMR01004962    MBY17581.1    GAMC01008065    JAB98490.1    GL437573    EFN70296.1    GAMC01008066    JAB98489.1    GDHF01008996    JAI43318.1    AJWK01029004    GDHF01018071    JAI34243.1    UFQT01002692    SSX33951.1    UFQT01001585    SSX31069.1    ABLF02029053    JRES01000301    KNC32560.1    JXJN01024017    JXJN01024018    JXJN01024019    KY963350    AVQ09950.1    CH902617    EDV43446.2    CH479182    EDW34407.1    CM000070    EIM52833.2    KRT00864.1    KRT00865.1    EAL28599.4    AF050630    AAD09205.1    CM000160    KRK03652.1    AE014297    AAF55308.1    ACZ94925.2    AFH06458.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000283053    UP000007151    + More
UP000037510    UP000015103    UP000007266    UP000009046    UP000019118    UP000245037    UP000030742    UP000078542    UP000007755    UP000075809    UP000005205    UP000078492    UP000076502    UP000078540    UP000279307    UP000005203    UP000008237    UP000078541    UP000036403    UP000053825    UP000053097    UP000008820    UP000000311    UP000092461    UP000007819    UP000037069    UP000091820    UP000078200    UP000092460    UP000092443    UP000007801    UP000008744    UP000001819    UP000192221    UP000002282    UP000000803   

PRIDE

H9JKG2    O61543    Q9VEV9   

Pfam

PF00989   PAS        + More
PF08447   PAS_3
PF00010   HLH
PF00474   SSF

Interpro

IPR000014   PAS        + More
IPR013655   PAS_fold_3       
IPR039091   AHR/AHRR       
IPR013767   PAS_fold       
IPR001610   PAC       
IPR035965   PAS-like_dom_sf       
IPR036638   HLH_DNA-bd_sf       
IPR011598   bHLH_dom       
IPR038377   Na/Glc_symporter_sf       
IPR001734   Na/solute_symporter       

SUPFAM

SSF55785   SSF55785        + More
SSF47459   SSF47459       

Gene 3D

4.10.280.10     1.20.1730.10    

CDD

cd00130  PAS
cd00083  HLH

ProteinModelPortal

H9JKG2   A0A2H1VMP2   A0A2A4IUM1   A0A194QJ55   A0A194RJK7   A0A437B5L2   + More
A0A212FP39   A0A0L7L2E5   T1HJL0   A0A1B6KR57   D6X498   A0A0K8SCA6   A0A0K8SC85   E0VM01   N6UTD4   A0A2P8YY46   U4UA23   A0A195CJ67   F4X3J1   A0A151X8Y1   A0A158NRN3   A0A195DG42   A0A154P7Y0   A0A195BN99   A0A3L8D8Y9   A0A088AS43   E2BTU8   A0A195EX44   A0A2P0ZDR0   A0A0J7KI63   A0A0L7RHK2   A0A026WIZ9   Q16NY1   Q16NX9   A0A2S2NK70   W8BB95   E2A8E6   W8C7E1   A0A0K8VWR4   A0A1B0EWW8   A0A0K8V699   A0A336MWK5   A0A336MPL7   J9K681   A0A0L0CJY5   A0A1A9WH34   A0A1A9VVZ4   A0A1B0C1F0   A0A1A9XFH6   A0A3Q8ECM0   B3M2J3   B4GFM2   I5APE8   Q295V9   A0A1W4U783   O61543   A0A0R1E7K0   Q9VEV9   E1JIM6  

PDB

4F3L     E-value=0.00306015,     Score=95

KEGG

101736473    no KO assigned | (RefSeq) single-minded homolog 2

GO

GO:0006805   GO:0006355   GO:0045944   GO:0046983   GO:0003677   GO:0009410   GO:0005634   GO:0003989   GO:0022857   GO:0016021   GO:0007468   GO:0046982   GO:0008049   GO:0010092   GO:0036011   GO:0000981   GO:0000122   GO:0048800   GO:0048814   GO:0007613   GO:0045466   GO:0045676   GO:0005829   GO:0007469   GO:0005515   GO:0006030   GO:0008061   GO:0030276   GO:0048268   GO:0000049   GO:0004812   GO:0043039   GO:0042555   GO:0048384  

PANTHER

PTHR10649  

Subcellular location

Nucleus  

Length:

316

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.71513999999999

Exp number, first 60 AAs:

4.71243

Total prob of N-in:

0.18186

outside

1  -  316

 

 

Pi

208.808143

Theta

165.29826

Tajima's D

1.27781

CLR

4.923529

CSRT

0.726763661816909

Interpretation

Uncertain