Gene

KWMTBOMO03789

Annotation

integrase_core_domain_protein_[Lasius_niger]

Location

Bomo_Chr7(-):1772149-1774017      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.372

CDS

ATGCATTATAGCGGTACTCCTGCTGAGAAACGCGAAGGTCTTACTCCAGAACCTGAAACAGAACAAATTGAAATTCCAGAAAAAAGAAACAACATTAATGAGAACTTACCTTTTCAGGAACCTAACCCCCTTTATTCCAGCTCTAGTCAAGATCATGTTGATGAACCATCTCCCTCAAGTGGAAGACCACAAAGGGACGTGAGACCACCAGCATGGACCAAAGATTATGAGTTAAGTCGCTGCGTGACCATGTTTACGTCAGAAAATAATGACGACTATGACTGCTCTTTACTAACATACAAAGAAGCTGTGACTGGCACCGACAGACGAAATTGGGAGAAGGCGATACAATCTGAAATGGAATCATTACAGAAAAATAACACCTGGGTATTAGTAGACAAGTCAGAAGCCAAAGGACACAAAATACTGTCGAACAAATGGGTATTTCGGATTAAAGATGACGGTACGTACAAGGCTAGATTAGTCGTACGTGGATGCGAGCAGAAAGGAAACCTGGATTTCGAAGACATTTATAGCCCAGTAGTAAGTCAATCTGCATTAAAAACTTTATTAGCAATTGCCGCATCTAAATCTTACTACTTCATGACATTTGACATCAAGACAGCTTTCTTATACGGAGAGTTATCAGATGAAGTTTATATGAAATTGCCTGTTGGCTATGAGACTAACTGCAATACTACTGAAGTAGTTTGCCGATTAAAAAAATCTTTGTACGGATTAAAACAAGCTCCATTTACATGGAACAAAACTTTTACCCAAGCGATGTTTGATTTGGGATTCAAGACAATCAAAACAGATCGATGCGTTTTCATAAACGAAGATAAGTCAATAATAATCGGACTATTCGTTGATGATGGACTTGTCCTAGGAAAAGATAAGAAAAAGATCGAAGCTATTTTGAAGAAACTTGAAACCAAATTTCAAATGAAAAAGAATGAAAATCCAAGTACTTATCTGGGTATGGAAATAAAAAACTCAAAAGAAGGAATAATTCTTACTCAGAGATCCTACATAAATGACGTACTGGAAAAATACAACATGAAAAATGCCAAACCTTGTGACACGCCCGCAAGTAGCGATTCAAAGTCGATACAGGAAACTGCCCAGGAGAAGGAATATCCCTATAGGGAAGCAGTGGGAAGTTTACTGTACCTGTCTACCAGAACCAGACCAGATATCGCACAAGCGGTCAATCTAGTTAGCAGGAAGGTCGAAAACCCCACTAGAGAAGACGTTACAAAAGTGAAGAAAATATTCAAATATTTAGTGGGAACCAAACATAAAGGCATTTTATTCAAACGAAACAAACCGATAGAGAGCATCGATGCTTACAGCGACTCGGATTATGCTGGAGACCCATTGACGCGAAGAAGCACTTCTGGTTCCGTGCTAATGATAGCCGATGGACCAATATCATGGGCATCCAAGAGGCAGCCTATAGTAGCGCTATCGTCGACTGAAGCCGAGTACATAGCCGCAGCCGACTGTTGCAAAGAGGCATTGTATCTCAAATCTCTATTACAGGAAATAACCGGCTTGGACATAAAAATAAATCTACATGTTGATAACCAAAGTTCGATTCAACTTGTGAAGTCTGGATCCTTCAACAAAAGGTCGAAGCACATAGACGTGCGGTACCATTTTATACATGAACACTTCGTGCATGGATTAATAAATATTAGCTACTGTCCCACAGAAATTCAATTAGCTGACGTAATGACAAAACCATTGTCAAAAGTAAAATTTGAAAGACACTGTGCAAGATTAATGCATATATAG

Protein

MHYSGTPAEKREGLTPEPETEQIEIPEKRNNINENLPFQEPNPLYSSSSQDHVDEPSPSSGRPQRDVRPPAWTKDYELSRCVTMFTSENNDDYDCSLLTYKEAVTGTDRRNWEKAIQSEMESLQKNNTWVLVDKSEAKGHKILSNKWVFRIKDDGTYKARLVVRGCEQKGNLDFEDIYSPVVSQSALKTLLAIAASKSYYFMTFDIKTAFLYGELSDEVYMKLPVGYETNCNTTEVVCRLKKSLYGLKQAPFTWNKTFTQAMFDLGFKTIKTDRCVFINEDKSIIIGLFVDDGLVLGKDKKKIEAILKKLETKFQMKKNENPSTYLGMEIKNSKEGIILTQRSYINDVLEKYNMKNAKPCDTPASSDSKSIQETAQEKEYPYREAVGSLLYLSTRTRPDIAQAVNLVSRKVENPTREDVTKVKKIFKYLVGTKHKGILFKRNKPIESIDAYSDSDYAGDPLTRRSTSGSVLMIADGPISWASKRQPIVALSSTEAEYIAAADCCKEALYLKSLLQEITGLDIKINLHVDNQSSIQLVKSGSFNKRSKHIDVRYHFIHEHFVHGLINISYCPTEIQLADVMTKPLSKVKFERHCARLMHI

Uniprot

A0A0A9YCF4   A0A0V0G477   A0A1B6C2D3   A0A0A9WDS7   A0A0A9W6J9   A0A0A9Z2D6   + More
A0A0A9WIY3   A0A0A9YZ93   A0A146M489   A0A0A9X817   A0A0A9XEU3   A0A0A9YMV4   A0A0A9X3Z4   A0A1B6FNY3   A0A1Y1LVN7   A0A2S2NXV8   A0A146LHR9   X1X8M7   A0A0K8TKJ8   A0A438BTG2   X1XTZ0   X1WLH4   A0A2N9GRB2   A0A139WJX6   A0A0V1NCR1   A0A2N9HJ76   A0A0J7KE66   A0A2N9ELY1   A0A1Y1N3G5   A0A1Y1NM77   A0A2N9FRN5   A0A2N9FV67   A0A2N9FQJ1   A0A2N9EK90   A0A2N9I8Q5   A0A2N9EIR6   A0A1Y1KNM9   A0A2N9GCE7   A0A2N9H6B2   A0A438E432   A0A2N9ID98   A0A2N9GA80   A0A2N9I6N4   A0A2N9FZ01   A0A438E2Y0   A0A2N9FW82   A0A438I3N7   A0A2N9GGS7   A0A085MTW9   B8YLY7   A0A2N9ETC8   A0A2N9HKJ4   A0A2N9I7V5   A0A0J7K725   A0A2N9IGN4   A0A2N9GRZ0   A0A2N9H0T6   A0A2N9GBF3   A0A2N9GBS9   A0A151SDY6   A0A151R2G6   A0A151R6U8   A0A2N9EE21   A0A2N9H4V1   A0A2N9IUP8   A0A151TNJ8   A0A182H8F8   A0A1Y1MYL6   A0A0V0WRK3   A0A1Y1MYL8   A0A2N9I1P0   A0A151TKT1   A0A151RJN4   B8YLY3   A0A2N9H2E5   A0A2N9I9F7   B8YLY5   B8YLY6   A0A0J7KRG1   A0A0V1HMN9   A0A2N9I0Q5   A0A1J3DEI6   A0A0V1IW77   A0A151UC72   A0A151UBW1   A0A2N9EPH6   B8YLY4   A0A2N9FWL6   A0A151T7T6   H6U1F0   H6U1E9   A0A2N9ISP1   A0A3S3PPW2   A0A2N9IGN3   A0A1Y1M571   A0A0V0YKY1   A0A438HJE1   A0A2N9J5P5  

Pubmed

25401762    26823975    28004739    26369729    30458008    18362917    + More
19820115    24929829    19656907    22057054    26483478    22427337   

EMBL

GBHO01016409    JAG27195.1    GECL01003258    JAP02866.1    GEDC01029908    JAS07390.1    + More
GBHO01040574    JAG03030.1    GBHO01040573    JAG03031.1    GBHO01006096    JAG37508.1    GBHO01035865    JAG07739.1    GBHO01035869    GBHO01006095    JAG07735.1    JAG37509.1    GDHC01005053    JAQ13576.1    GBHO01028636    GBHO01028635    JAG14968.1    JAG14969.1    GBHO01024362    JAG19242.1    GBHO01012744    JAG30860.1    GBHO01031779    JAG11825.1    GECZ01017843    JAS51926.1    GEZM01048830    JAV76370.1    GGMR01009345    MBY21964.1    GDHC01010945    JAQ07684.1    ABLF02042027    GDAI01002967    JAI14636.1    QGNW01002623    RVW14265.1    ABLF02043571    ABLF02045585    ABLF02057174    ABLF02063637    ABLF02063640    ABLF02026843    OIVN01002268    SPD02135.1    KQ971338    KYB28117.1    JYDM01000512    KRZ81798.1    OIVN01003897    SPD14257.1    LBMM01008978    KMQ88491.1    OIVN01000183    SPC75833.1    GEZM01013586    JAV92451.1    GEZM01002084    JAV97376.1    OIVN01001091    SPC89740.1    OIVN01001196    SPC91020.1    OIVN01001052    SPC89229.1    OIVN01000147    SPC75222.1    OIVN01005024    SPD20514.1    OIVN01000116    SPC74628.1    GEZM01078128    GEZM01078127    JAV63002.1    OIVN01001729    SPC97049.1    OIVN01002904    SPD07378.1    QGNW01001404    RVW42505.1    OIVN01005312    SPD21871.1    OIVN01001666    SPC96375.1    OIVN01004879    SPD19723.1    OIVN01001309    SPC92453.1    QGNW01001416    RVW42052.1    OIVN01001520    SPC94877.1    QGNW01000147    RVW91307.1    OIVN01001890    SPC98658.1    KL367655    KFD60665.1    FJ544857    ACL97387.1    OIVN01000557    SPC82046.1    OIVN01003569    SPD12194.1    OIVN01004910    SPD19931.1    LBMM01012536    KMQ86167.1    OIVN01005657    SPD23465.1    OIVN01002256    SPD02034.1    OIVN01002680    SPD05612.1    OIVN01001669    SPC96464.1    OIVN01001707    SPC96839.1    KQ483417    KYP53032.1    KQ484186    KYP36645.1    KQ484038    KYP38095.1    OIVN01000036    SPC73022.1    OIVN01002854    SPD06945.1    OIVN01006259    SPD29117.1    CM003606    KYP68590.1    JXUM01118474    KQ566190    KXJ70335.1    GEZM01017329    JAV90762.1    JYDK01000067    KRX78390.1    GEZM01017328    JAV90763.1    OIVN01004603    SPD18338.1    CM003607    KYP67664.1    KQ483702    KYP42748.1    FJ544851    ACL97383.1    OIVN01002725    SPD05963.1    OIVN01005059    SPD20680.1    FJ544854    ACL97385.1    FJ544856    ACL97386.1    LBMM01003976    KMQ92933.1    JYDS01000349    KRZ11769.1    OIVN01004867    SPD19656.1    GEVI01015824    JAU16496.1    JYDS01000077    KRZ26987.1    CM003603    KYP76811.1    KYP76810.1    OIVN01000230    SPC76722.1    FJ544853    ACL97384.1    OIVN01001534    SPC95017.1    CM003610    KYP63120.1    JN402333    AFB73912.1    JN402332    AFB73911.1    OIVN01006233    SPD28466.1    NCKU01004452    RWS05910.1    OIVN01005591    SPD23209.1    GEZM01040221    GEZM01040220    JAV80932.1    JYDU01000007    KRY00737.1    QGNW01000214    RVW84557.1    OIVN01006372    SPD31671.1   

Proteomes

UP000007819    UP000288805    UP000007266    UP000054924    UP000036403    UP000075243    + More
UP000069940    UP000249989    UP000054673    UP000054805    UP000285301    UP000054815   

Pfam

PF07727   RVT_2        + More
PF13976   gag_pre-integrs
PF00665   rve
PF00098   zf-CCHC
PF13855   LRR_8
PF03106   WRKY

Interpro

IPR013103   RVT_2        + More
IPR012337   RNaseH-like_sf       
IPR036397   RNaseH_sf       
IPR039537   Retrotran_Ty1/copia-like       
IPR025724   GAG-pre-integrase_dom       
IPR001584   Integrase_cat-core       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR032675   LRR_dom_sf       
IPR036576   WRKY_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003657   WRKY_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF118290   SSF118290       

Gene 3D

3.30.420.10     2.20.25.80     3.80.10.10    

ProteinModelPortal

A0A0A9YCF4   A0A0V0G477   A0A1B6C2D3   A0A0A9WDS7   A0A0A9W6J9   A0A0A9Z2D6   + More
A0A0A9WIY3   A0A0A9YZ93   A0A146M489   A0A0A9X817   A0A0A9XEU3   A0A0A9YMV4   A0A0A9X3Z4   A0A1B6FNY3   A0A1Y1LVN7   A0A2S2NXV8   A0A146LHR9   X1X8M7   A0A0K8TKJ8   A0A438BTG2   X1XTZ0   X1WLH4   A0A2N9GRB2   A0A139WJX6   A0A0V1NCR1   A0A2N9HJ76   A0A0J7KE66   A0A2N9ELY1   A0A1Y1N3G5   A0A1Y1NM77   A0A2N9FRN5   A0A2N9FV67   A0A2N9FQJ1   A0A2N9EK90   A0A2N9I8Q5   A0A2N9EIR6   A0A1Y1KNM9   A0A2N9GCE7   A0A2N9H6B2   A0A438E432   A0A2N9ID98   A0A2N9GA80   A0A2N9I6N4   A0A2N9FZ01   A0A438E2Y0   A0A2N9FW82   A0A438I3N7   A0A2N9GGS7   A0A085MTW9   B8YLY7   A0A2N9ETC8   A0A2N9HKJ4   A0A2N9I7V5   A0A0J7K725   A0A2N9IGN4   A0A2N9GRZ0   A0A2N9H0T6   A0A2N9GBF3   A0A2N9GBS9   A0A151SDY6   A0A151R2G6   A0A151R6U8   A0A2N9EE21   A0A2N9H4V1   A0A2N9IUP8   A0A151TNJ8   A0A182H8F8   A0A1Y1MYL6   A0A0V0WRK3   A0A1Y1MYL8   A0A2N9I1P0   A0A151TKT1   A0A151RJN4   B8YLY3   A0A2N9H2E5   A0A2N9I9F7   B8YLY5   B8YLY6   A0A0J7KRG1   A0A0V1HMN9   A0A2N9I0Q5   A0A1J3DEI6   A0A0V1IW77   A0A151UC72   A0A151UBW1   A0A2N9EPH6   B8YLY4   A0A2N9FWL6   A0A151T7T6   H6U1F0   H6U1E9   A0A2N9ISP1   A0A3S3PPW2   A0A2N9IGN3   A0A1Y1M571   A0A0V0YKY1   A0A438HJE1   A0A2N9J5P5  

KEGG

101736913    no KO assigned | (RefSeq) uncharacterized LOC101736913

GO

GO:0003676   GO:0000943   GO:0015074   GO:0008270   GO:0003700   GO:0043565  

PANTHER

PTHR11439  

Subcellular location

Nucleus  

Length:

599

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01274

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00146

outside

1  -  599

 

 

Pi

269.955626

Theta

164.494669

Tajima's D

-1.483299

CLR

0

CSRT

0.0634468276586171

Interpretation

Uncertain