SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03780  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA010068
Annotation
PREDICTED:_alpha-soluble_NSF_attachment_protein_[Papilio_machaon]
Location in the cell
Cytoplasmic   Reliability : 1.375 Extracellular   Reliability : 1.297
 

Sequence

CDS
ATGGCGGACAACGAACAAAAAGCGATGCAGCTAATGGCCGAGGCGGAGAAAAAATTAAGTTCATCAAAATCGTTCCTGGGGTCACTTTTCGGAGGCTCCTCAAAAATCGAAGAGGCCGTAGACTGTTATCTCAGAGCAGCTAACTTATTCAAGATGGCCAAGAAGTGGCCTCAAGCAGGGCAGGCTTTCTGTAATGCAGCACAGCTCCACTTGAAAGCTGGTGTTCGCCATGATGCTGCCACCAATTTTGTAGATGCTTCTAACTGTTACAAGAAATGTGATGCTAACGAGGCCGTGTCCTGTCTCCTGAAAGCGATCGAGATCTACACCGATATGGGTCGTTTCACTGTGGCTGCCAAACAACACCAGAACATTGCGGAGCTGTACGAGACGGAGTGCGTTGACCTCGCTCGGGCCATGCAGCACTACGAGCAGGCGGCCGACTACTTCCGCGGCGAGGAGTCCACCTCCTCCGCCAACAAGTGCATGCTGAAGCTGGCGCAGTACGCCGCCCAGCTCGAGCACTACGACAAGGCCATACAGATCTACGAGCAGATCGCCAAGTCGTCCCTGGACAACAGCCTGCTCAAGTACAGTGCGAAGGAGTACATGTTCCGAGCCGCCCTGTGCCACCTGTGCGTCGACATACTGAACGCGCAGCACGCCCTCGAGAAGTACAGCTCTCTGTATCCAGCCTTCGGGGACACCAGAGAATATAAACTCATCAAGGAGCTGATCGAGCACCTTGAAGACCAAAACGTGGATGCGTACACAGAGGCCGTCAAGACTTACGACAGCATATCCAGACTGGACCAGTGGTACACCACCATGCTGGTCCGCATCAAGAAACAGATCAACGACAACCCGGACCTCCGTTGA
Protein
MADNEQKAMQLMAEAEKKLSSSKSFLGSLFGGSSKIEEAVDCYLRAANLFKMAKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDMGRFTVAAKQHQNIAELYETECVDLARAMQHYEQAADYFRGEESTSSANKCMLKLAQYAAQLEHYDKAIQIYEQIAKSSLDNSLLKYSAKEYMFRAALCHLCVDILNAQHALEKYSSLYPAFGDTREYKLIKELIEHLEDQNVDAYTEAVKTYDSISRLDQWYTTMLVRIKKQINDNPDLR

Summary

EMBL
BABH01024751    BABH01024752    GAIX01004623    JAA87937.1    RSAL01000347    RVE42304.1    + More
KQ459167    KPJ03468.1    AGBW02014315    OWR41883.1    ODYU01001342    SOQ37394.1    NWSH01001180    PCG72226.1    KQ460869    KPJ11784.1    DS235882    EEB20034.1    GECZ01024975    GECZ01016895    JAS44794.1    JAS52874.1    KQ978069    KYM97357.1    GAPW01002984    JAC10614.1    CH477797    EAT36112.1    GAPW01002985    JAC10613.1    ADTU01027851    KQ976730    KYM76435.1    GL768112    EFZ12201.1    AAAB01008879    EAA08389.2    APCN01002129    DS232250    EDS38397.1    KQ981993    KYN31091.1    AXCM01004089    ACPB03006289    GAHY01000584    JAA76926.1    GFDL01008477    JAV26568.1    GFDF01003531    JAV10553.1    ATLV01004128    KE524190    KFB35002.1    GFTR01004676    JAW11750.1    GBGD01002355    JAC86534.1    GGFM01006904    MBW27655.1    GGFK01004785    MBW38106.1    GGFJ01007957    MBW57098.1    ADMH02001488    ETN62364.1    KK852777    KDR16769.1    GL435626    EFN72978.1    AJWK01027949    GECL01002990    JAP03134.1    GDAI01000356    JAI17247.1    GAMD01002685    JAA98905.1    KK107231    QOIP01000009    EZA55017.1    RLU19056.1    NEVH01010582    PNF32237.1    KZ288215    PBC32563.1    JR043175    AEY59734.1    KY285070    ATP16173.1    KQ971307    EFA11398.1    GEDC01030170    JAS07128.1    NEVH01003500    PNF40615.1    CVRI01000048    CRK99000.1    GBHO01036141    GBHO01036139    GBHO01036138    GBHO01036135    GBRD01009128    GBRD01009127    GDHC01010107    JAG07463.1    JAG07465.1    JAG07466.1    JAG07469.1    JAG56693.1    JAQ08522.1    KQ982491    KYQ55758.1    GECU01009140    JAS98566.1    GANO01001184    JAB58687.1    AXCN02000179    JXUM01008452    KQ560261    KXJ83489.1    KQ435821    KOX72450.1    GEZM01015970    JAV91401.1    GL732582    EFX74532.1    GDIQ01098559    GDIP01062318    LRGB01003134    JAL53167.1    JAM41397.1    KZS04081.1    GDIQ01121156    JAL30570.1    JXJN01002301    CCAG010010279    EZ422398    ADD18674.1    UFQS01000027    UFQT01000027    SSW97751.1    SSX18137.1    GEMB01003388    JAR99826.1    GECZ01021267    JAS48502.1    GDIQ01021305    JAN73432.1    GAMC01016024    JAB90531.1    CH933809    EDW19771.2    CH940647    EDW70363.1    APGK01047281    KB741077    KB632432    ENN74326.1    ERL95535.1    CH480826    EDW44191.1    CM000363    CM002912    EDX11213.1    KMZ00739.1    CH916366    EDV98006.1    GEDV01004474    JAP84083.1    GACK01008697    JAA56337.1    GEFH01004318    JAP64263.1    GFPF01005930    MAA17076.1    GBXI01007666    JAD06626.1    CH954178    EDV52490.1    CH963847    EDW72865.2    JRES01000487    KNC30861.1    GAKP01007119    JAC51833.1    JH432008   
Interpro
IPR000744   NSF_attach        + More
IPR011990   TPR-like_helical_dom_sf       
SUPFAM
SSF48452   SSF48452       
Gene 3D
PDB
6IP1     E-value=4.52073e-90,     Score=843

Ontologies

Topology

Length:
292
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00968
Exp number, first 60 AAs:
0.00127
Total prob of N-in:
0.11433
outside
1  -  292
 
 

Population Genetic Test Statistics

Pi
247.814233
Theta
172.694699
Tajima's D
1.529135
CLR
0.100025
CSRT
0.794760261986901
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26280517 AMNVIESIHSK 100.00 1e-09
28556443 QINDNPDLR 100.00 1e-06
28556443 SFLGSLFGGSSK 100.00 3e-06
26822097 IDQWYTTMIVR 100.00 2e-04
26280517 HCVYVYR 100.00 2e-04
28467696 HCYQSYVDFHR 100.00 2e-04
26822097 YSSIYPAFGDTR 100.00 0.008
26280517 AMEIAIHEMFQDANAIR 100.00 0.008
27102218 CDANEAVSCIIK 100.00 0.008
28556443 YSSLYPAFGDTR 100.00 0.008
28556443 AMQLMAEAEK 100.00 0.034
28556443 AMQHYEQAADYFR 100.00 0.034
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