Silkworm Genome Informatics Database

Gene

KWMTBOMO03764

Pre Gene Modal

BGIBMGA010026

Annotation

PREDICTED:_LIM_domain_only_protein_7_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr7(-):1095748-1196458 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.517

CDS

ATGTCCAATTGCGATAACAATCGCAAGCTAGGCTCCAGCGCCAACGAATACGACACATGCACGACCACGACGATCAGCTCTCCGGAGCCCGAAGAGTACACGTATGAGAGTGCCATCGAGGGCTACAAGTCGAGGATCATATCACAAACCAATAGCAATATGGTTAAGACACTCGTCATTAACTCCAAAGAGACGTCACCGGAAAAGAACAGCGATCTAAACAGAATAAGAACAAGCGTTAGCAACAAAATCGAAGAAAAGGTCTCGTCCTTCCAACAAGAAAGGACTAACGACGCAAAAAATTTCGTAAAGAAAGATTTACCCAAGGTCGACATACACAAAAGGAGGGAACAGTTTGAAAGAGAAAACTCGCAAGAATTACAAATAAATAAGCCCAAAATTGCAGATATTAACAACAAAAAGTCAATAAAGGAAAGGCTGTCGAGCTTAGAGAAGTTTACAGAAGAAACACACATTCAGAAATCTACAAGCGATCTCACCAAATTACCAACAGAGGTGAGACCTCTGAAAGAACGACTGTCTTCTTTAGAAAAAGTGAAGTCTGCTGAACCTGAAAAAGTAAAAAGGCTCTCGAACGGAGACCTTGGAAATACTAGATCCTTGAAAGAACGACTGAATAGTCTAAAATCGCAAACTTCAGAGGAAGAAGTCAAATCAGTGAAAACAGAAGTAAAGGATGTCTCCATGAGCTTAAAAGAGCGTCTCTCCTGTTTGGATGCAGCCAAAAATAAAGAGATTCCAAAAATATCAGTCGATGAACAAATTCACCGCAATGAAAAGATTTCAGAAACCAAAAACATTGAAGATTCAAAGGGAAAACTAATGGAAAACTCTTTGAAATCAAGTCTCACTGGCATCGAAAGTCAAATGCAAAGTTTTTGCCGGTCTCTGGACAGCTTAGATACAAATGGGCAGTCATCGCCGAACTCTTTTGAAAGGGTTCAAAGCTTAGAAGACTTTGATTGTGCTGAAATGCAAAACAATACAGTACCGAGTGATATTGAAACCGAAGATAGCGGTATTCACACTGCTAGAGATTCATGTGCCCCTGCTGATGATATAGCAGATTTAAGCCAAGTCGCCTCACCGATCGGCGAAACTATGATCGAAGCTTCAGAATACGAATCGTCAAATGAAGATAGTGTACAGGTAGAGTTAAAAATCGTAGAAGAGAAGATACCTGAACATTTCCAGCCAACGGTACAGGAAGCCATTGTTGAAGAAGCTGAAGATCAAGACAGCAAAGGTGATGATAGCACAAGCAACTACACCCAAGCAGTGTCTCAACAACTTGAGAACTCAAGTGCTACTGAAGAAGTATCTGAATTACACACAGACAAAGACGATGAAGATACACTTAAAAGCTTGGAAAACCAAGATACTAGTGTGATAGACGCCTTGGAACTAGCATTCAAAGAATTAGATTCAGAAGACAGTGCCAATATGGAAGAAGACACGTCCAATAAAACTGGCCTAGATTTGAGTCTAAATGAGAAGATTTCAGTAACACCTCTGTATGAGAACATAGATATATTCTATCAGAGTACAGATGAAGTTTCGTTCCCTCTGGATATGCCGAGTAGTGTGATGGAACCGCCTAAAGAGAAACCGCCGCCGCCACCCACTGAGGATGTCGACGGCGATGAATTTTTAGGAAACGGAAACTTCAAGCACACGAACTCGACGCGTCGAATCAAGAAGGAAATTCGCAACAAACGCACCAGCTTCTTAGGAATCGAAGGTCAAGTGGACGACAGCTATCTGGACGCTGACTTATCCTTAGCGCCTCGACCTGACATCACCTCTTTCCTTCAAGAAGAGACCAAAATTGAGAAGTTGTTGTACAAGAAAACACTTTCTCATGACATGGATGCGAAGTTGAGAGATAGTAGGGATTCAGGTGTTGATGTGGACAGGGGACCATCAGCCGAAGCCTGGTATAAGGGGCAGTCGTCTCCGGAGACCTCAAATCCTCATAGCAGACAGAATAGTGAGCCCTACACTCACGTAACAATAACATCGGACGAAGAAGAAATCATCAAGAAACAAAACGGAGACTTCACGAACAACCTCAACACGAAACTGGCCGAGCTAAAAGAAACATCACAGTCCGACGACAGCCAAATAGAGAATCTGGACAAGAAACTACAGCAGCAACAGGCGCGTCACACTAACGACGAATGGCGGGACGGGCAATTTGATGACGCTCACACAAAGGAAGTACTTCGGTTCGAAAGAGAACTACTGCAACTCGAACAAGAAGAGCTGAGCAGGCAAAGGGAGAAACTGATTCAAGATCAAAATCGAATCATTCAGAAATCAGTACAAGATGTATCCGTACGCGTCCCGGATAAGACTCCATTACAGACGCGTTCCGGGAAACATTCGCAGAACTATCGCCATTCTATGCCCAACTTGCTACTGAAAGAAAACTACACTCCTATCACTCCTGTGATACAAGAGAGATCTTACGCGGACGAGAAGAGGAAGCCATTTGTATCAGAAGAGCATATACAAAGGCATTTCGGGGTGGAGGAGAGCAGGAGAGTGCTTTACGATGAGAGATTGGAAGCGAGACGGCAGACTCCCGTTGTGAGGGTCCCACAGCCAGTTCTGCCGCCGAAACCGAAAAGCCGAGAATCCATAGAAAGAGAGATCACTATGAGAAGCAGTCGAGTGCCGTCCGCCGTGGAGTATGTGAATGTGGAACGCAACGCGGTACTCCTGAGATCCAAGCAGCCTCCCCCGCCCGCCGCTGCCGCTCAGACCAACGGCACCTACCATCCGATGACTAGACACACTTTACAGGCTTTAAGCGCGGCTCCCACGCCCAAGCTCATGTCCAACTGTGAATGGATGCAAGCTCGCACCAGGAAACCGTACAACTACAACCAGCACTGGCTCATACAGGAAGCGGAACACCGCAGGATAGAAGAACAAAGGAGTCGACTGCGGACTGCCCAGCGTCACTCGTACCACCAGGACGTGCCCAACACGCTCCACAACACGGCGCCACTGAGCAACAGCCATCAGTTTCTGGCGCAGGAAGTGAAACGGACGCCGCGAGAGGAGAAGCTTCTCAGCGTCAGCGGGAAGAGGAAATGTTCTCACTGCGGAGAGGAACTAGGTCGCGGAGCCGCCATGATCATCGAGTCCCTGTCTCTGTGCTACCACGTGTGGTGCTTCCGCTGCGGAGTGTGCGGCGCCGCGCTGGGGGACGGGCGCGCCGGCACCGACGTGCGCGTGCGCGGCCGCCGCCTGCACTGCCCGCACTGCTACTCCGACGACGGCGGCGACAAGTACTCGCGCGTGTGA

Protein

MSNCDNNRKLGSSANEYDTCTTTTISSPEPEEYTYESAIEGYKSRIISQTNSNMVKTLVINSKETSPEKNSDLNRIRTSVSNKIEEKVSSFQQERTNDAKNFVKKDLPKVDIHKRREQFERENSQELQINKPKIADINNKKSIKERLSSLEKFTEETHIQKSTSDLTKLPTEVRPLKERLSSLEKVKSAEPEKVKRLSNGDLGNTRSLKERLNSLKSQTSEEEVKSVKTEVKDVSMSLKERLSCLDAAKNKEIPKISVDEQIHRNEKISETKNIEDSKGKLMENSLKSSLTGIESQMQSFCRSLDSLDTNGQSSPNSFERVQSLEDFDCAEMQNNTVPSDIETEDSGIHTARDSCAPADDIADLSQVASPIGETMIEASEYESSNEDSVQVELKIVEEKIPEHFQPTVQEAIVEEAEDQDSKGDDSTSNYTQAVSQQLENSSATEEVSELHTDKDDEDTLKSLENQDTSVIDALELAFKELDSEDSANMEEDTSNKTGLDLSLNEKISVTPLYENIDIFYQSTDEVSFPLDMPSSVMEPPKEKPPPPPTEDVDGDEFLGNGNFKHTNSTRRIKKEIRNKRTSFLGIEGQVDDSYLDADLSLAPRPDITSFLQEETKIEKLLYKKTLSHDMDAKLRDSRDSGVDVDRGPSAEAWYKGQSSPETSNPHSRQNSEPYTHVTITSDEEEIIKKQNGDFTNNLNTKLAELKETSQSDDSQIENLDKKLQQQQARHTNDEWRDGQFDDAHTKEVLRFERELLQLEQEELSRQREKLIQDQNRIIQKSVQDVSVRVPDKTPLQTRSGKHSQNYRHSMPNLLLKENYTPITPVIQERSYADEKRKPFVSEEHIQRHFGVEESRRVLYDERLEARRQTPVVRVPQPVLPPKPKSRESIEREITMRSSRVPSAVEYVNVERNAVLLRSKQPPPPAAAAQTNGTYHPMTRHTLQALSAAPTPKLMSNCEWMQARTRKPYNYNQHWLIQEAEHRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLSNSHQFLAQEVKRTPREEKLLSVSGKRKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDGRAGTDVRVRGRRLHCPHCYSDDGGDKYSRV

Uniprot

A0A2W1BTN0 A0A2A4J2H9

Pubmed

28756777

EMBL

KZ150010 PZC75093.1 NWSH01003455 PCG66265.1

Proteomes

UP000218220

Pfam

PF15949 DUF4757 + More
PF00412 LIM

Interpro

IPR031865   DUF4757        + More
IPR001781   Znf_LIM
IPR029980   LIMCH1

ProteinModelPortal

A0A2W1BTN0 A0A2A4J2H9

KEGG

101742048 K06084 F-box protein 20 | (RefSeq) LIM domain only protein 7

GO

GO:0046872 GO:0008270 GO:0005216 GO:0006811 GO:0016020 GO:0007155 GO:0000049 GO:0004812 GO:0043039 GO:0042555 GO:0048384

PANTHER

PTHR15551:SF3

Length:

1111

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02236

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00001

outside

1 - 1111

Pi

222.378375

Theta

171.228105

Tajima's D

1.324134

CLR

0.115719

CSRT

0.753212339383031

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics