Silkworm Genome Informatics Database

Gene

KWMTBOMO03750

Pre Gene Modal

BGIBMGA010033

Annotation

PREDICTED:_homeobox_protein_ceh-24_[Bombyx_mori]

Location

Bomo_Chr7(-):646580-750158 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.576

CDS

ATGACCTCCGAAACAGAACGAGAGGAAATGCAAACTGTAATCACGTACACTACACCTGACTTAGACCAGGCGGAGAGCAAACTAGACTACGACTTTTGTCCGAGCAATGAAAGACTGACTCCGGAAATCGAAGAGAAAATTAACATCGAAGACGACAAAGATGAGGAACTAATCATAGACGACAGCGACTCGCAAGAGAGAACGAACAATAATGAAGTAACGGAAACTCAAAGGGAGGAAGCTCATGAACCGTCCTGGCATCCGCATGTCTACGGGAAACCACCGAAGAAACCCACACCGCACACGATCGAGTATATATTAGGCTTGCAGGACCAAGAGAAACACGTTACCCAATTGATTAACGTTAAAAGGAATTTTGAAACGAAATCAGCGAAGAACATTCAGATACAGACTGACGAGAGACGTTTTAATGTGCACAAGAATAAGTTACACGAGCAACTCCTGCAGAGGAGTGTCAGGACTAGTGAGAGTGAGTTAGATGGGAAAGTGTTCGTCTATAGGAGCGAGGAGCCATTGAACTTGTCCGTGAAGCCCAAGGACTGGAGTGGAGATGACGAGAAAACCTATAAAGATTCATCAAAGCTGATAAAAAGGAAGAAGTCAACTGATGATGTGCGTTCTCCCCTCGGAGGTGAGGGCTCGCTCACCAGCGAGGAGGGCGAAGATCAAGTCGGGAGACGTAAGAAAGCTCGCACGACCTTCACCGGACGACAGATCTTCGAATTGGAGAAGCTGTTTGAAGTGAAGAAGTATTTGTCTTCAGGCGAGAGAGCTGACATGGCGAAACTTTTAAATGTTACCGAAACTCAGGTCAAGATCTGGTTCCAGAACAGAAGAACGAAATGGAAGAAGAAAGACAACGTAACGAACGCCGAAGTCGCCGAAATAAAACAGCAGAACAAACCAGACGACAGAAAGACGGACGAGAAAGACGCCGCCGCCGTCGACATGTCCAAAAAGACTTGCGCGAAACTCACCGAGAAACTCAAGAGCATCAAAACAGTGGAAGTGAGGCCGAGGAAAGCGGAAAAGGGTGTGCTGTTAGAAACATTATGTGATAACGATATTGAGAGTAGAATAACGATAACTAAAATAACGAATAAATTATCGAGCACTGACCTCTCGGGCGGAGGGGGCGTCTCCGTGAAGAGCTTTAGCCCCGACGAGGTCAGTGAGATGAGCTTCGACAGCATCAGTCGAGACGTCGAGATGTAG

Protein

MTSETEREEMQTVITYTTPDLDQAESKLDYDFCPSNERLTPEIEEKINIEDDKDEELIIDDSDSQERTNNNEVTETQREEAHEPSWHPHVYGKPPKKPTPHTIEYILGLQDQEKHVTQLINVKRNFETKSAKNIQIQTDERRFNVHKNKLHEQLLQRSVRTSESELDGKVFVYRSEEPLNLSVKPKDWSGDDEKTYKDSSKLIKRKKSTDDVRSPLGGEGSLTSEEGEDQVGRRKKARTTFTGRQIFELEKLFEVKKYLSSGERADMAKLLNVTETQVKIWFQNRRTKWKKKDNVTNAEVAEIKQQNKPDDRKTDEKDAAAVDMSKKTCAKLTEKLKSIKTVEVRPRKAEKGVLLETLCDNDIESRITITKITNKLSSTDLSGGGGVSVKSFSPDEVSEMSFDSISRDVEM

Uniprot

A0A2A4JX83 A0A2W1BMA5 A0A0N0PBQ9 A0A1J1I2E4

Pubmed

28756777 26354079

EMBL

NWSH01000500 PCG76002.1 KZ149996 PZC75421.1 KQ460938 KPJ10672.1 + More
CVRI01000039 CRK94511.1

Proteomes

UP000218220 UP000053240 UP000183832

Pfam

PF00046 Homeodomain

Interpro

IPR001356   Homeobox_dom        + More
IPR017970   Homeobox_CS
IPR020479   Homeobox_metazoa
IPR009057   Homeobox-like_sf

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

A0A2A4JX83 A0A2W1BMA5 A0A0N0PBQ9 A0A1J1I2E4

PDB

2ME6 E-value=3.86804e-11, Score=164

KEGG

101746933 no KO assigned | (RefSeq) homeobox protein ceh-24

GO

GO:0005634 GO:0043565 GO:0006355 GO:0003677 GO:0005886 GO:0007155 GO:0000049 GO:0004812 GO:0043039 GO:0042555 GO:0048384

Subcellular location

Nucleus

Length:

411

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01385

outside

1 - 411

Pi

213.340435

Theta

159.814093

Tajima's D

1.177443

CLR

0.268229

CSRT

0.710964451777411

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics