Silkworm Genome Informatics Database

Gene

KWMTBOMO03749

Pre Gene Modal

BGIBMGA010051

Annotation

PREDICTED:_homeobox_protein_Nkx-6.2_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr7(+):540469-590689 View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear Reliability : 4.395

CDS

ATGTCACTAAATTTGAGCAACGGCGCGCTCAGCGCATGCGCGGTGCAGTCCGGCGGGATGGATAAGGACGGCAAAAAAAAACACACCAGACCCACCTTCAGCGGACAGCAGATATTCGCGCTGGAGAAGACCTTCGAACAGACCAAGTACCTCGCGGGCCCCGAGCGAGCGAAGCTGGCGTACGCGCTGGGCATGACGGAGTCACAGGTTAAGGTCTGGTTCCAAAACAGAAGGACGAAATGGAGGAAAAAGCACGCAGCCGAAATGGCGACAGCTAAACGCAAACAAGAAGAACTCGGCGAGGAGTGCGAGGACCAGGAGCCGCACGACAACGACCCCTGCAGCGACGAGGAGGAACCCAAGAGGCCGAGGCTCGATCTCCATCACCAGCACATCAGCCACCACCCACTGCCTCACCACCGGCAGTGA

Protein

MSLNLSNGALSACAVQSGGMDKDGKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERAKLAYALGMTESQVKVWFQNRRTKWRKKHAAEMATAKRKQEELGEECEDQEPHDNDPCSDEEEPKRPRLDLHHQHISHHPLPHHRQ

Uniprot

A0A2W1BRZ5 A0A3S2LTE1 A0A336MG18 A0A151NZE6 G7MSW8 A0A093Q8B4 + More
A0A0A0AZN3 A0A091IVR0 M7CBT1 H0ZN74 A0A091GE31 A0A091FAI6 K7FV45 A0A0R4IY89 A0A093IH33 A0A099ZMD8 A3QRJ9 A0A2G9S961 A0A0S7MI21 A0A443S4Q2

Pubmed

28756777 22293439 22002653 23624526 20360741 17381049 + More
23594743 17376808

EMBL

KZ149996 PZC75426.1 RSAL01000013 RVE53421.1 UFQT01001145 SSX29136.1 + More
AKHW03001467 KYO42266.1 CM001257 EHH25864.1 KL672108 KFW84831.1 KL873581 KGL99402.1 KL218261 KFP03726.1 KB477522 EMP42163.1 ABQF01039710 KL448001 KFO79399.1 KK718883 KFO58830.1 AGCU01174612 CABZ01085047 KL215662 KFV66056.1 KL894911 KGL82083.1 DQ416765 ABD77103.1 KV927046 PIO35981.1 GBYX01024207 JAP01214.1 NCKV01008603 RWS22507.1

Proteomes

UP000283053 UP000050525 UP000053258 UP000053858 UP000054308 UP000031443 + More
UP000007754 UP000053760 UP000052976 UP000007267 UP000000437 UP000053875 UP000053641 UP000288716

Pfam

PF00046 Homeodomain

Interpro

IPR017970   Homeobox_CS        + More
IPR001356   Homeobox_dom
IPR009057   Homeobox-like_sf
IPR020479   Homeobox_metazoa
IPR000047   HTH_motif
IPR033630   NKX-6.1

SUPFAM

SSF46689 SSF46689

CDD

cd00086 homeodomain

ProteinModelPortal

A0A2W1BRZ5 A0A3S2LTE1 A0A336MG18 A0A151NZE6 G7MSW8 A0A093Q8B4 + More
A0A0A0AZN3 A0A091IVR0 M7CBT1 H0ZN74 A0A091GE31 A0A091FAI6 K7FV45 A0A0R4IY89 A0A093IH33 A0A099ZMD8 A3QRJ9 A0A2G9S961 A0A0S7MI21 A0A443S4Q2

PDB

5FLV E-value=3.37332e-10, Score=149

KEGG

101746792 no KO assigned | (RefSeq) homeobox protein Nkx-6.2

GO

GO:0043565 GO:0006355 GO:0005634 GO:0003677 GO:0003700 GO:0006357 GO:0003309 GO:0050796 GO:0030516 GO:0001764 GO:0045687 GO:0000978 GO:0022010 GO:0031018 GO:0021912 GO:0021913 GO:0010455 GO:0031641 GO:0001227 GO:0050885 GO:0010454 GO:0045686 GO:0021522 GO:0003310 GO:0045944 GO:0030154 GO:0005886 GO:0007155 GO:0000049 GO:0004812 GO:0043039 GO:0042555 GO:0048384

PANTHER

PTHR24340:SF31

Subcellular location

Nucleus

Length:

142

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00799999999999999

Exp number, first 60 AAs:

0.00266

Total prob of N-in:

0.04439

outside

1 - 142

Pi

281.738738

Theta

174.266503

Tajima's D

2.024048

CLR

0.038519

CSRT

0.885055747212639

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics