Gene

KWMTBOMO03721  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010000

Annotation

PREDICTED:_small_glutamine-rich_tetratricopeptide_repeat-containing_protein_alpha-like_[Bombyx_mori]

Location

Bomo_Chr7(+):134676-135931      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.686 Nuclear   Reliability : 1.459

CDS

ATGTCAAACGAAATCAAAATAGTTGCAGTGAGTATCGTGAACTTTCTAAAACAGCAATTGGACGGCGATTCTTTGAGCCCTGATTCTAGAGAGAGTGTCGAAGTCGGCGTGCAATGCATTGAGACCGCTTTCGAGCTGACGACGGAAGATGCGGCTCGAGGCCTGGACTTACTGCAGCTTGTCCGTCAGCGACTGGGGCCGCCCGCTAACAAGGCTGAAGCCGAACGACTCAAGAACGAAGGCAACGAGCTCATGAAAGCTGAGCGTTACAACGAAGCGCTTGAAAAGTACACGCGCGCCATAGAGATCGACCCAAGAAACGCAGTCTACTACTGCAATCGCGCGGCTGCGCATTTCAGGCTGTGCGACCCCGAGGCAGCGGTGAGCGACTGTACCACAGCACTCGCCCTACAGCCTGACTATAGCAAGGCGTACGGACGCCTTGGGCTCGCGCTCACCGCCCTCGAGAGACACTGCGAGGCGCGCGCTGCCTACGCCCGCGCCGCTCAACTCGACCCTGAGAACGAGTCCTACCGAGAAAACCTCCAACTCGCTGACCAAACCTTAGCACAGCGCCCTAACGATCTGAGTGGCTTACTCCGGAATCCTGCTTTGATCAACATGGCTACGGAGATGCTCACTAACCCTAATATGCAGAACCTCATTTCAGGGTTGATGACAACGACAGGGGGAGCTCAGGGTGTAGGAGAGGTGCCCCCAGGAGGTATTAATGCGTTGTTAGAAGTGGGACAATCATTGGCACAACAAATGCAAGCTGCTAATCCTGATTTGGTAGAGCAACTGCGACGTCAGCTTCGACCCCCAGGGTCTGGTGAAAATCAGCCACCTTCTCAGTGA

Protein

MSNEIKIVAVSIVNFLKQQLDGDSLSPDSRESVEVGVQCIETAFELTTEDAARGLDLLQLVRQRLGPPANKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTALALQPDYSKAYGRLGLALTALERHCEARAAYARAAQLDPENESYRENLQLADQTLAQRPNDLSGLLRNPALINMATEMLTNPNMQNLISGLMTTTGGAQGVGEVPPGGINALLEVGQSLAQQMQAANPDLVEQLRRQLRPPGSGENQPPSQ

Uniprot

H9JKE9   A0A0N1IEJ1   A0A2H1WII2   A0A194QD05   I4DNY8   A0A2W1BS03   + More
A0A195EG36   A0A0J7KVT5   F4WQS1   A0A195ESK8   A0A158NRT4   A0A151X3E4   A0A088A7V2   A0A2A3EQV3   A0A195D161   A0A026WCS8   E9IY50   A0A195BRL0   E2A9W5   A0A0N0U5G8   A0A0C9QV25   A0A0L7RBH4   A0A0P4Z5S2   A0A0N8C3W3   A0A0P5G8Y8   A0A0P5BCF9   A0A0P5KH32   A0A0P5KUX9   A0A0P5EJB2   A0A0P5PI74   A0A0P6EJJ2   A0A0P5K871   A0A0P5EQY9   A0A0P5U7G5   A0A023FVG0   A0A1E1XS65   A0A0P6G5E5   A0A0P5GWG1   A0A154PMX7   A0A0P5ZUT9   A0A2A4K2K7   A0A1E1X4T5   A0A131Z7R9   K7J8G8   A0A0P5ENI3   A0A023GKN8   G3MNU7   A0A0N8CT87   A0A0P5K7L3   A0A0P5KQN5   E3TDQ6   A0A131XMH1   A0A2R5LDG3   A0A401RGA2   A0A224Z814   B7Q815   A0A0K8RJW9   Q6NTZ8   G5BZC6   A0A0N8EUU4   Q4PLZ5   A0A0P6JC79   E3TC54   A0A293MXJ0   A0A0P6BV29   A0A3B4EHG4   A0A0P7Y7C1   W5LWG4   A0A2R2MQB0   A0A0P5JR22   H3A0N6   F7E1T8   A0A087R350   A0A0A0ABZ4   A0A286XEB3   A0A091SG92   A0A091VG92   G3WEQ9   A0A093QBY9   A0A094NEQ9   A0A091KCL6   A0A093QQ27   A0A093JCD8   K7F3S2   H0YRE4   A0A091W302   A0A452HA73   A0A091NN40   A0A091UGG0   A0A093HDL5   K7F3S1   A0A091N9R5   A0A091RP19   U3K5A4   A0A091TJV9   A0A091LU97   A0A218V971   H0YXC6   A0A093PSW1  

Pubmed

19121390    26354079    22651552    28756777    21719571    21347285    + More
24508170    30249741    21282665    20798317    29209593    28503490    26830274    20075255    22216098    20634964    28049606    30297745    28797301    21993625    16431279    9215903    18464734    21993624    21709235    17381049    20360741    28562605   

EMBL

BABH01040901    BABH01040902    KQ460938    KPJ10689.1    ODYU01008897    SOQ52883.1    + More
KQ459167    KPJ03423.1    AK403202    BAM19628.1    KZ149996    PZC75436.1    KQ978983    KYN26837.1    LBMM01002618    KMQ94582.1    GL888275    EGI63434.1    KQ981993    KYN30892.1    ADTU01024304    KQ982562    KYQ54935.1    KZ288203    PBC33421.1    KQ977041    KYN06139.1    KK107274    QOIP01000008    EZA53743.1    RLU19711.1    GL766908    EFZ14489.1    KQ976424    KYM88581.1    GL437965    EFN69774.1    KQ435793    KOX74174.1    GBYB01004512    JAG74279.1    KQ414617    KOC68188.1    GDIP01221901    JAJ01501.1    GDIQ01117355    LRGB01000725    JAL34371.1    KZS16258.1    GDIQ01266128    GDIQ01131498    GDIQ01121794    JAJ85596.1    GDIP01191748    JAJ31654.1    GDIQ01184224    JAK67501.1    GDIQ01184225    JAK67500.1    GDIQ01269496    JAJ82228.1    GDIQ01138239    JAL13487.1    GDIQ01062767    JAN31970.1    GDIQ01193368    JAK58357.1    GDIQ01265792    JAJ85932.1    GDIP01118554    JAL85160.1    GBBL01001459    JAC25861.1    GFAA01001277    JAU02158.1    GDIQ01038131    JAN56606.1    GDIQ01236006    JAK15719.1    KQ434977    KZC12814.1    GDIP01039266    JAM64449.1    NWSH01000199    PCG78485.1    GFAC01004916    JAT94272.1    GEDV01002346    JAP86211.1    AAZX01004047    AAZX01004223    AAZX01005218    AAZX01011703    AAZX01012332    AAZX01015164    AAZX01021074    GDIP01145454    JAJ77948.1    GBBM01001745    JAC33673.1    JO843548    AEO35165.1    GDIP01101151    JAM02564.1    GDIQ01187977    JAK63748.1    GDIQ01187976    JAK63749.1    GU588486    ADO28442.1    GEFH01000332    JAP68249.1    GGLE01003444    MBY07570.1    BEZZ01001296    GCC17192.1    GFPF01011787    MAA22933.1    ABJB010215649    ABJB010561786    ABJB010871661    ABJB010913234    ABJB011100466    DS879898    EEC14987.1    GADI01002411    GEFM01005450    JAA71397.1    JAP70346.1    BC068804    AAH68804.1    JH172536    EHB14637.1    GEBF01000611    JAO03022.1    DQ066333    AAY66970.1    GDIQ01009398    JAN85339.1    GU587933    ADO27890.1    GFWV01020518    MAA45246.1    GDIP01017114    JAM86601.1    JARO02009485    KPP61580.1    AHAT01011293    GDIQ01195214    JAK56511.1    AFYH01105490    AFYH01105491    AFYH01105492    AFYH01105493    KL226068    KFM07904.1    KL871433    KGL92059.1    AAKN02057175    KK471328    KFQ57624.1    KL410953    KFR01448.1    AEFK01069977    AEFK01069978    KL671190    KFW81622.1    KL273096    KFZ65026.1    KK502193    KFP21496.1    KL224509    KFW60814.1    KK579672    KFW12710.1    AGCU01099544    AGCU01099545    ABQF01060646    ABQF01060647    ABQF01060648    ABQF01060649    ABQF01060650    KK734525    KFR09405.1    KL387282    KFP90344.1    KK432063    KFQ89232.1    KL205953    KFV77530.1    KK844249    KFP86176.1    KK803132    KFQ30242.1    AGTO01020873    KK454255    KFQ75397.1    KK507983    KFP62032.1    MUZQ01000025    OWK62533.1    ABQF01033289    ABQF01033290    KL669021    KFW75147.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000078492    UP000036403    UP000007755    + More
UP000078541    UP000005205    UP000075809    UP000005203    UP000242457    UP000078542    UP000053097    UP000279307    UP000078540    UP000000311    UP000053105    UP000053825    UP000076858    UP000076502    UP000218220    UP000002358    UP000221080    UP000287033    UP000001555    UP000006813    UP000261440    UP000034805    UP000192224    UP000018468    UP000085678    UP000008672    UP000002279    UP000053286    UP000053858    UP000005447    UP000053283    UP000007648    UP000053258    UP000053119    UP000054081    UP000007267    UP000007754    UP000053605    UP000291020    UP000053584    UP000016665    UP000197619   

PRIDE

H9JKE9   

Pfam

PF13181   TPR_8        + More
PF16546   SGTA_dimer
PF07719   TPR_2
PF00515   TPR_1
PF00022   Actin
PF00078   RVT_1
PF14529   Exo_endo_phos_2
PF13176   TPR_7

Interpro

IPR019734   TPR_repeat        + More
IPR011990   TPR-like_helical_dom_sf       
IPR013026   TPR-contain_dom       
IPR032374   SGTA_dimer       
IPR013105   TPR_2       
IPR001440   TPR_1       
IPR004000   Actin       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR006636   STI1_HS-bd       

SUPFAM

SSF48452   SSF48452        + More
SSF56219   SSF56219       

Gene 3D

1.25.40.10     3.60.10.10    

ProteinModelPortal

H9JKE9   A0A0N1IEJ1   A0A2H1WII2   A0A194QD05   I4DNY8   A0A2W1BS03   + More
A0A195EG36   A0A0J7KVT5   F4WQS1   A0A195ESK8   A0A158NRT4   A0A151X3E4   A0A088A7V2   A0A2A3EQV3   A0A195D161   A0A026WCS8   E9IY50   A0A195BRL0   E2A9W5   A0A0N0U5G8   A0A0C9QV25   A0A0L7RBH4   A0A0P4Z5S2   A0A0N8C3W3   A0A0P5G8Y8   A0A0P5BCF9   A0A0P5KH32   A0A0P5KUX9   A0A0P5EJB2   A0A0P5PI74   A0A0P6EJJ2   A0A0P5K871   A0A0P5EQY9   A0A0P5U7G5   A0A023FVG0   A0A1E1XS65   A0A0P6G5E5   A0A0P5GWG1   A0A154PMX7   A0A0P5ZUT9   A0A2A4K2K7   A0A1E1X4T5   A0A131Z7R9   K7J8G8   A0A0P5ENI3   A0A023GKN8   G3MNU7   A0A0N8CT87   A0A0P5K7L3   A0A0P5KQN5   E3TDQ6   A0A131XMH1   A0A2R5LDG3   A0A401RGA2   A0A224Z814   B7Q815   A0A0K8RJW9   Q6NTZ8   G5BZC6   A0A0N8EUU4   Q4PLZ5   A0A0P6JC79   E3TC54   A0A293MXJ0   A0A0P6BV29   A0A3B4EHG4   A0A0P7Y7C1   W5LWG4   A0A2R2MQB0   A0A0P5JR22   H3A0N6   F7E1T8   A0A087R350   A0A0A0ABZ4   A0A286XEB3   A0A091SG92   A0A091VG92   G3WEQ9   A0A093QBY9   A0A094NEQ9   A0A091KCL6   A0A093QQ27   A0A093JCD8   K7F3S2   H0YRE4   A0A091W302   A0A452HA73   A0A091NN40   A0A091UGG0   A0A093HDL5   K7F3S1   A0A091N9R5   A0A091RP19   U3K5A4   A0A091TJV9   A0A091LU97   A0A218V971   H0YXC6   A0A093PSW1  

PDB

2VYI     E-value=7.54961e-30,     Score=324

KEGG

101737064    K16365 small glutamine-rich tetratricopeptide repeat-containing protein alpha | (RefSeq) small gluta

GO

GO:0016021   GO:0072380   GO:0005829   GO:0006620   GO:0016020   GO:1903646   GO:0030433   GO:0071816   GO:1903071   GO:0005634   GO:1903070   GO:1904288   GO:0043621   GO:0042802   GO:0005515   GO:0003676   GO:0005886   GO:0007155   GO:0000049   GO:0004812   GO:0043039   GO:0042555   GO:0048384  

Length:

285

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00512

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.04343

outside

1  -  285

 

 

Pi

269.447697

Theta

218.740862

Tajima's D

0.790129

CLR

0.186721

CSRT

0.596220188990551

Interpretation

Uncertain