Gene

KWMTBOMO03708

Pre Gene Modal

BGIBMGA002748

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_cadherin-89D_[Bombyx_mori]

Location

Bomo_Chr6(-):16023784-16053793      View in EpiBrowser

Full name

Cadherin-89D      

Location in the cell

Cytoplasmic   Reliability : 1.51 Nuclear   Reliability : 1.808

CDS

ATGTATGGTTGTAACTTCTACCCGGTGGGAGAATACCTGAAGTTCGTGAGGATACCAGAAAACCTGAAAGTTGGAGATGAGGTCCTCAAAGTCGAGGTCCATCCAAGAAAAAACCTGAATCTGCAACCAGTAGACCGAGAAGAAGACGCTCATCTCTTCACGTACAGAGACCTGAACCGGACCCACGTCTCCGTAATCTTAGCTCAGAGCATCGACTCCTTAGTAGACAGTGATTCTCCGCAGAACGTGGTGAAGTTCAGACTTGGCTGCGACTTCGATGAGGGAGATGACCTGATCTCAGCTTACCTCTCGGTGACAGTGTACATTGAAGATGTCAATGACAACGTGCCAATATTCCTCGACACCCCATATCATGTTACTGTTGATGAATTAACTCCAACAGGTTTAACCATTTTCAAAGATATCAGAGCCTTCGATCGCGACAAACCCAACACTCCGAACTCGGACGTCCACTACAGCATCGTATCTGGTAACGATGACGGTCACTTCGCTTTGGAGAGCTCACACAAACCTGTTCTGCTTCTTCGAAAGGTCTTGGACTACGATGCCGGAGACAAAGAATTTCAACTTGTTATTATGGCTTCTGATCGCGGGTCCCCTCCTCGAAGCTCCAACACTACAGTTCACATCGTGGTACAAGACAACGACGACCTGCCTCCAAAGTTCACGAAAGATGCGTACAGAACACAGATTCCAGAATTTTATCCATTGATGGGCAAACGTATCCACAAAGAAATACTCTTCCCAGAACCTATACATGCAATTGATCAAGATCTAGGCGTCGGCGCTACATTGCGCTATGAATTAATCTCTGGGAACGACAGAAAGCTCTTTTCTCTGGATTCTGTGAATGGAAGTCTATTCTTGGAGAAAGAATTAGATTTGGACGCCGAACATAACTTACAAGCAAACACGTTCGTCCTTCAAGTTCAAGCCTCACAGCTGAACAATCCTCTAAAAACGGCTCAAGCCAGAGTTGAAATAGAGCTTTTGGATCTAAATGACAATTTACCTGAATTTGAAGTTGATTTTTACAATATTAGTATAGTGGAAAACCTCCCAAATGGGTTTAGTGTTCTTCAAGTGATGGCAACCGATAAAGACCAAGGTGAAAATGGTGAATTCACGTATCAGCTTGACGATCCAAAAGGAGCCTTCTCAATCGATCCTAGATCCGGATGGCTCACTGTCCGGAATCAAACTGTCCTCGACAGAGAAGCCCATTCGTCTCTAAGGATGAAAGTCTACGCCAAAGAGACAAACCCGAGCGTGGTCGGGACTTTCGCTGACAGCCAACGCATAGCAAAATGGCGTCGACAGCCCTTGGAAACCAACGCTCCCTTAGAAAAGACTACTTACGTCTTTCCTGATAAAGTTGGCACTAAAACTGAAAATATAGAATACTATGACGAGCAACTAATGTCTTTTGTTAACGTGGAGGTTACATTACTCGACGCGAATGATAACAACCCAGTATTTGTACCGAGTAACCTTTACGAATTCAGCATGAAATCTAACGCGAAAGTTGGCACTGTTATTGGCAAAGTGAAGGCTGTAGATCCAGATTTGGGACAAAATGGCATGGTGCTATACGATTTACAAAGAACAAGCAATTTGACCATAACATCGCCGTTTAAAATAAATCCAAACACTGGAACTGTTAGTGTGGCTGAATCTCCCATTTTGGAGGGAAGGCATGCTTTATTTGTCGAAGCTTCCGACCAACCGGCCAACCCCAGTGAAAGGAGATATTCACTGGCCGTAGTTACTATTGAAGTTACGAGAGGAACTAAAGGTAACAAGCCAGATATACCTGACTTTATGGGAGCACCATACGAATTCTGGGTTGGATCAAATGTTGGTATTGGTACAAGTGTTGGACAAATTAGAGTTAATGACGCATTTGAACAAAACGATGTTTCTTATGATTTGCTACATGGATACGAAGAAGGAGTACCGTTTGCTGTGGAAGAAAGATCCGGGGTCATAACCGTAGTGGACGATCTCTCCCGGTACAATCGTCCAATGTACGACTTTGAAGCGGTGGCCCTACAAGAAAACGCCAACCTATCCATAGTGACCAACGCCACAGTTCACGTGGTTGACGTTAACGATGAGAGAGGGGTTTTATTGAAAGGTGCACATTCACCGATAATATTCCACGTCAAAGAAAACTCAGCCGGGGCCGCTATAGGACAAATTTTCCACACCAACATGAGTTCCATTTATGGTAACGGCACAGGAAATGTAAGATTCTTGATCGCAAATCAACAAGACGTTACGGACGACATAGCTATAGCGGAAGACGGAACTATCTTTACCCAGAAACCTTTAGATCGAGAAAAGCGTGATGTTTACAGGATGACTGTGATAGCTGAGTTCAACAAAGGTGTAATTTCCGGCGCAGGAATATATCAAGTCACAATATACATTGAAGACGAAAACGACAATCCGCCTGTTTTCGAACATGCTACTTATGAGGGCTTCATTATGGAAAACTCTAAGATAGGAACAGAAATTAAGATGGACAATATAATAAAGGCTACTGATGCTGATGAAGGAACAAACGCTTTATTCATGTACACGTTGTTCGGTGAAGGCAAAGAAATGTTTGATGTTGACGAAAACACCGGAGTTGTTAAGTTTATAGGAGACAGTTTGGATAGAGAGAAAAAGATCATGTACAAGCTAAGCTTGGTGGCTAGAGATACCGGAGGCCTGAGTTCGGAGGCCGAATTAATCATAATGATTGGTGATGAGAACGATAATAAGCCGGAATTTAACCAAATAATAATGCCCATGGACAGATATGTAGAGCTTATTGAAGCCGAAGAAAATTCGAAAGTCAGAATTCACAGAGAAACAAAACTTAATGGAACAGCCGGCTTCACAATCATTGAAGTAAAACCAAAAAATAAATTTGCTCTTGATGTTGATCAATTAGGGCCTTTATTTTTGATACCAGAAAACATTCCTATCGGAACAACGATTATAAAATTAAACGCTTTGGATCTCGACAGCGGACTCAACGGACAGATACGATATGAATTCAATTCAGAAGTTTATATTCCACCGAGCAAACTGTCCGCTGACGCACTAGAAGTGAAGCGATACTTTGTGATCAACGAACGGCACGGCCACGTTATTGTCGCACGAAGCTTGCCGCCAGAGTCAGAATTCAGATTGAACATTTCCGCTTTAGATGGTGGAAATTTGAACGATAACATTTCGGTGAGAGTGTTCGTCAAGGATGTCAACGACCACTTTCCGGTATTTAAGAAAACTTGGTACAATTTCAATGTTGAAGAAGCTCAGTACACCAGACGCGTTTTAGGAAAAGTGGACGCAACTGACGCTGATTTTGGACAGAACGCAAATCTAACGTATTTCATTCAACCTTCAGACACGGATCTGCCGTTTGAAATATCACCTTTGACCGGAGTTCTCAGCGTCAACGGAGAGCTGGACAGAGAGACGGAGGATAAGTATATACTGACTGTCGTGGCGAGAGATAATGGCCTCGAAAAGAAACTATCATCTTCTGTCAGTGTGGAAGTTCAAGTACTAGATGTAAATGATAACTCACCCAAATTCTACGCTTTCGATGAATTATTAGAATGGAAACACCCCGAGGCTGACGAACTGTCTAACCATAATTTCGAATCGGTTATGATGATTCCTGTTTACAAAGCTACGATTGAAGAAAACGCACCGATCGGGACCACGGTCGCTAAAGTGTTTGCAAACGACACTGATTTCATTGGCAACGGCAACGGCTTGATTTTGTATAGCCTTCCTCAAAGGAAGAACCAACAGAGTTTGTTTGCGATCGACTCCAAAGAAGGAACCATCACAACAATAGGTCGTCTCGATTTCGAGAATCAGTCGGCGCACAACATAACTATAGTTGCGTCAGATTTGGGACTGCCAAGTTTGAGCTCGACTGCCATACTGATGGTTACTGTCGCTGACGTTCCCGACGAAGTAGAGATGTCGGACAAGCCAGTATTTATATCGCGATACTATGAACTAGAAATCGAAGAGAACGTAAATGCACCTGTGGAGTTAGTCTCACTGAACTTGACCGAGCATTATGAAAACTTTAAAATGAGATATTACATATTGAACGAAAATGATACAGATATCAGACGAACGTTTGTTATTGATCCAAGAAACGGCACTTTGTATCTCGTTCGAAGTCCAGATCGAGAGGTCAAAGACACTTATGAGGTCATAGTAAGAGCCGAAAGACAGAAATATAGTAGAGAACTCCCTCATATGATCTACCCTGTAGCCGAGGATGTGTTGGAAGGAATGACCAAGTATGACGTCAAAGTAGTAGTAAGAATTAAAGACGTGAATGATAATTCCCCGAAGTTTACGAACGGGAATCGTCCCTTGGTCACGGCCATACCGACCACCGCGCCCTTCGGATATCAAGTTATGCAGCTAAAGGCTACAGACTCTGACATCGGGATCAATGCAGACATCCGCTACCAGATACTCAACGAGCAGGCCCCCCGGTTCGCCATCGACCCCGTGTCGGGGACGGTCCGGGTGGTGGCGGCTCTGGCCAGGGACGCCGGAAGAGTCTTCGGATTCGACGTCAAAGCCACAGATAAGAAAGGAGCTGACGATGGGAAGTCGGCCATCGCTAATGTTTTCGTAAGTTATAGTGTGATGGTTTTGTAA

Protein

MYGCNFYPVGEYLKFVRIPENLKVGDEVLKVEVHPRKNLNLQPVDREEDAHLFTYRDLNRTHVSVILAQSIDSLVDSDSPQNVVKFRLGCDFDEGDDLISAYLSVTVYIEDVNDNVPIFLDTPYHVTVDELTPTGLTIFKDIRAFDRDKPNTPNSDVHYSIVSGNDDGHFALESSHKPVLLLRKVLDYDAGDKEFQLVIMASDRGSPPRSSNTTVHIVVQDNDDLPPKFTKDAYRTQIPEFYPLMGKRIHKEILFPEPIHAIDQDLGVGATLRYELISGNDRKLFSLDSVNGSLFLEKELDLDAEHNLQANTFVLQVQASQLNNPLKTAQARVEIELLDLNDNLPEFEVDFYNISIVENLPNGFSVLQVMATDKDQGENGEFTYQLDDPKGAFSIDPRSGWLTVRNQTVLDREAHSSLRMKVYAKETNPSVVGTFADSQRIAKWRRQPLETNAPLEKTTYVFPDKVGTKTENIEYYDEQLMSFVNVEVTLLDANDNNPVFVPSNLYEFSMKSNAKVGTVIGKVKAVDPDLGQNGMVLYDLQRTSNLTITSPFKINPNTGTVSVAESPILEGRHALFVEASDQPANPSERRYSLAVVTIEVTRGTKGNKPDIPDFMGAPYEFWVGSNVGIGTSVGQIRVNDAFEQNDVSYDLLHGYEEGVPFAVEERSGVITVVDDLSRYNRPMYDFEAVALQENANLSIVTNATVHVVDVNDERGVLLKGAHSPIIFHVKENSAGAAIGQIFHTNMSSIYGNGTGNVRFLIANQQDVTDDIAIAEDGTIFTQKPLDREKRDVYRMTVIAEFNKGVISGAGIYQVTIYIEDENDNPPVFEHATYEGFIMENSKIGTEIKMDNIIKATDADEGTNALFMYTLFGEGKEMFDVDENTGVVKFIGDSLDREKKIMYKLSLVARDTGGLSSEAELIIMIGDENDNKPEFNQIIMPMDRYVELIEAEENSKVRIHRETKLNGTAGFTIIEVKPKNKFALDVDQLGPLFLIPENIPIGTTIIKLNALDLDSGLNGQIRYEFNSEVYIPPSKLSADALEVKRYFVINERHGHVIVARSLPPESEFRLNISALDGGNLNDNISVRVFVKDVNDHFPVFKKTWYNFNVEEAQYTRRVLGKVDATDADFGQNANLTYFIQPSDTDLPFEISPLTGVLSVNGELDRETEDKYILTVVARDNGLEKKLSSSVSVEVQVLDVNDNSPKFYAFDELLEWKHPEADELSNHNFESVMMIPVYKATIEENAPIGTTVAKVFANDTDFIGNGNGLILYSLPQRKNQQSLFAIDSKEGTITTIGRLDFENQSAHNITIVASDLGLPSLSSTAILMVTVADVPDEVEMSDKPVFISRYYELEIEENVNAPVELVSLNLTEHYENFKMRYYILNENDTDIRRTFVIDPRNGTLYLVRSPDREVKDTYEVIVRAERQKYSRELPHMIYPVAEDVLEGMTKYDVKVVVRIKDVNDNSPKFTNGNRPLVTAIPTTAPFGYQVMQLKATDSDIGINADIRYQILNEQAPRFAIDPVSGTVRVVAALARDAGRVFGFDVKATDKKGADDGKSAIANVFVSYSVMVL

Description

Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells (By similarity).

Keywords

Calcium   Cell adhesion   Cell membrane   Complete proteome   Glycoprotein   Membrane   Metal-binding   Reference proteome   Repeat   Signal   Transmembrane   Transmembrane helix  

Feature

chain  Cadherin-89D

Uniprot

H9IZR3   A0A2W1BKV0   A0A2A4J2L7   A0A2H1WZQ9   A0A437BVX0   A0A194RE77   + More
A0A212FF98   A0A194PXX4   A0A0L7KZL3   A0A139WAZ7   A0A139WAZ6   N6TX11   A0A067QR60   A0A1Y1M5K2   K7J8L9   A0A232F5X9   F4X6G8   A0A195F1G6   A0A026VWM3   A0A158NFZ4   A0A151IQF7   A0A195E6U9   A0A1B6ECX7   E2AMF7   A0A195B2R6   A0A0N0BCR1   A0A154P4C2   E0VGM0   A0A3Q0INJ7   A0A2L1IQ95   A0A088A706   A0A310SJ55   A0A1W4WRI2   A0A151XBZ3   A0A0C9R7B7   A0A0C9RAL2   A0A0T6BAA1   A0A2A3E7G8   A0A0J7L303   A0A2P8XZP2   A0A0L0BYJ3   B4LXQ1   A0A1I8N4E4   T1IAU4   B4K5W4   A0A1I8QBI2   B3M2N0   A0A1W4U760   B4IBU4   A0A1D2N9W3   B4PN02   Q9VEU1   A0A1A9W7B0   B4NBC5   A0A3B0K3B7   B4JU14   E2C2I1   A0A1A9YSW3   A0A1B0B2N6   A0A1B0FEI4   A0A0A1X020   A0A0A1X498   A0A1A9ZZ12   B4JRE4   A0A0K8W9W0   A0A0K8UKK0   B0W6B3   A0A226ENW3   A0A1A9VFX9   Q17MB2   A0A3B0JY89   A0A2H8U0B1   X1WJJ6   A0A2R7WH06   A0A0K8UPA7   T1IXK6   A0A182JTV0   A0A3S3PV24  

Pubmed

19121390    28756777    26354079    22118469    26227816    18362917    + More
19820115    23537049    24845553    28004739    20075255    28648823    21719571    24508170    21347285    20798317    20566863    29415259    29403074    26108605    17994087    25315136    27289101    17550304    10731132    12537572    25830018    17510324   

EMBL

BABH01037985    BABH01037986    KZ149985    PZC75702.1    NWSH01003839    PCG65774.1    + More
ODYU01012274    SOQ58492.1    RSAL01000004    RVE54564.1    KQ460500    KPJ14231.1    AGBW02008842    OWR52408.1    KQ459589    KPI97604.1    JTDY01004027    KOB68693.1    KQ971379    KYB25079.1    KYB25080.1    APGK01048267    APGK01048268    KB741103    KB632401    ENN73850.1    ERL94918.1    KK853461    KDR07482.1    GEZM01040024    JAV80994.1    AAZX01001551    AAZX01001555    AAZX01001556    AAZX01001558    AAZX01025410    NNAY01000932    OXU25849.1    GL888818    EGI57928.1    KQ981864    KYN34221.1    KK107681    EZA48060.1    ADTU01014866    ADTU01014867    KQ976780    KYN08366.1    KQ979568    KYN20920.1    GEDC01001499    JAS35799.1    GL440813    EFN65381.1    KQ976662    KYM78587.1    KQ435908    KOX69014.1    KQ434803    KZC05970.1    DS235150    EEB12526.1    MF741665    AVD96948.1    KQ759832    OAD62651.1    KQ982314    KYQ57875.1    GBYB01003855    JAG73622.1    GBYB01003856    JAG73623.1    LJIG01002681    KRT84259.1    KZ288357    PBC27166.1    LBMM01001160    KMQ96809.1    PYGN01001115    PSN37469.1    JRES01001160    KNC25046.1    CH940650    EDW67860.2    ACPB03007401    CH933806    EDW16201.1    CH902617    EDV42351.2    CH480827    EDW44852.1    LJIJ01000127    ODN02027.1    CM000160    EDW97014.2    AB053260    AE014297    BT010226    CH964232    EDW81089.2    OUUW01000005    SPP80469.1    CH916374    EDV91593.1    GL452135    EFN77837.1    JXJN01007685    CCAG010001985    GBXI01010167    JAD04125.1    GBXI01008601    JAD05691.1    CH916373    EDV94334.1    GDHF01004336    JAI47978.1    GDHF01025449    JAI26865.1    DS231848    EDS36587.1    LNIX01000002    OXA58970.1    CH477207    EAT47837.1    SPP80470.1    GFXV01007023    MBW18828.1    ABLF02033225    ABLF02033233    ABLF02033875    KK854809    PTY18933.1    GDHF01023797    JAI28517.1    AFFK01020101    NCKU01000153    RWS16902.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000007151    UP000053268    + More
UP000037510    UP000007266    UP000019118    UP000030742    UP000027135    UP000002358    UP000215335    UP000007755    UP000078541    UP000053097    UP000005205    UP000078542    UP000078492    UP000000311    UP000078540    UP000053105    UP000076502    UP000009046    UP000079169    UP000005203    UP000192223    UP000075809    UP000242457    UP000036403    UP000245037    UP000037069    UP000008792    UP000095301    UP000015103    UP000009192    UP000095300    UP000007801    UP000192221    UP000001292    UP000094527    UP000002282    UP000000803    UP000091820    UP000007798    UP000268350    UP000001070    UP000008237    UP000092443    UP000092460    UP000092444    UP000092445    UP000002320    UP000198287    UP000078200    UP000008820    UP000007819    UP000075881    UP000285301   

PRIDE

H9IZR3    Q9VEU1    B0W6B3   

Pfam

PF00028   Cadherin

Interpro

IPR002126   Cadherin-like_dom        + More
IPR020894   Cadherin_CS       
IPR015919   Cadherin-like_sf       

SUPFAM

SSF49313   SSF49313       

ProteinModelPortal

H9IZR3   A0A2W1BKV0   A0A2A4J2L7   A0A2H1WZQ9   A0A437BVX0   A0A194RE77   + More
A0A212FF98   A0A194PXX4   A0A0L7KZL3   A0A139WAZ7   A0A139WAZ6   N6TX11   A0A067QR60   A0A1Y1M5K2   K7J8L9   A0A232F5X9   F4X6G8   A0A195F1G6   A0A026VWM3   A0A158NFZ4   A0A151IQF7   A0A195E6U9   A0A1B6ECX7   E2AMF7   A0A195B2R6   A0A0N0BCR1   A0A154P4C2   E0VGM0   A0A3Q0INJ7   A0A2L1IQ95   A0A088A706   A0A310SJ55   A0A1W4WRI2   A0A151XBZ3   A0A0C9R7B7   A0A0C9RAL2   A0A0T6BAA1   A0A2A3E7G8   A0A0J7L303   A0A2P8XZP2   A0A0L0BYJ3   B4LXQ1   A0A1I8N4E4   T1IAU4   B4K5W4   A0A1I8QBI2   B3M2N0   A0A1W4U760   B4IBU4   A0A1D2N9W3   B4PN02   Q9VEU1   A0A1A9W7B0   B4NBC5   A0A3B0K3B7   B4JU14   E2C2I1   A0A1A9YSW3   A0A1B0B2N6   A0A1B0FEI4   A0A0A1X020   A0A0A1X498   A0A1A9ZZ12   B4JRE4   A0A0K8W9W0   A0A0K8UKK0   B0W6B3   A0A226ENW3   A0A1A9VFX9   Q17MB2   A0A3B0JY89   A0A2H8U0B1   X1WJJ6   A0A2R7WH06   A0A0K8UPA7   T1IXK6   A0A182JTV0   A0A3S3PV24  

PDB

5DZV     E-value=7.93936e-31,     Score=340

KEGG

101744031    no KO assigned | (RefSeq) cadherin-89D

GO

GO:0016021   GO:0005509   GO:0007156   GO:0005886   GO:0005887   GO:0044331   GO:0016339   GO:0016020   GO:0007155   GO:0000049   GO:0004812   GO:0043039   GO:0042555   GO:0048384  

Subcellular location

Cell membrane  

Length:

1570

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00179

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1  -  1570

 

 

Pi

2.534796

Theta

3.830906

Tajima's D

-2.088315

CLR

10.098984

CSRT

0.00694965251737413

Interpretation

Uncertain