Silkworm Genome Informatics Database

Gene

KWMTBOMO03706

Pre Gene Modal

BGIBMGA014530

Annotation

PREDICTED:_cadherin-89D-like_[Bombyx_mori]

Location

Bomo_Chr6(-):16002557-16005663 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.9

CDS

ATGAGCCGCAGGCCTATTTTAAAACAACACAGAAAGCCATATTCCCAACAACGTCTTAACGCTTTCTCAACTGAGCACTTAACAAAATACGGAGGCCTTTTCCCGTCGGGGGGGAACCAGTGCCAGGAGCTGAACCAGTCTTACAGCGAAGCGGATTCATACATAGACGTGATCAACCACAACGCCAAGAAAGTTTGTCCCCACGGCAACACCGTTGAGGAGTTCGGGAAGGCTCATCAGAAATGCGTGAAAACCCAATTCGCGGAGGGAGACGGCTTGAATCAGAAGCACGAGAGAATGTGCATCAAGTTCAATCAACGACCCATGCAGAAAAGGAAAGGACAAGACACGTCGATAACCTCAGTGAATTCCAGTGGACAAGACTCCGGCATCGCTGAGGCCCGCTGCCCGTGTGGCCACTCCAGCCTTCACACCTCGGAAGAGAGCAGCGGAGGCAGCTATGAAGACTCACTCAAATCGAATAGAAATCAAGAGGCAAGAAGCAAGCCCTACCGACAAGAGGACCCTCGACGACGAGCCTCATTCGCGCACCAACCGCTCGACACCCGGCAGTACCATTACAGAAGGCAGTCCTTCTCCGAAAATATGCAGAGGCACTTTCCTTCGTTCGAAAGAGTAGGCTCTGGTACAAAGATCACCAGACAAATATCCACTCCCAACGTCTCCAATGTTGGTCAACCTTACTTCATTCATAACCATAAGAAAGAATTGAGAAGGAAAGAAGCTCTGAACGAGCCGGCAGCGGATTACGACAACAGTGAAGGAGAAGATGTGTTTGACACGAGGATGGACAGGAGAGCGAGCGGCAAGCTCAAGCGAGGGAAGTTCGTGGAGCTTTTCGTGGCGACCCCGGCTGCCGCCGACGCCGTGAGGAGGCAGGGGAGTGAAAGGCTCATGTTCGCGAGGCCTTTATAG

Protein

MSRRPILKQHRKPYSQQRLNAFSTEHLTKYGGLFPSGGNQCQELNQSYSEADSYIDVINHNAKKVCPHGNTVEEFGKAHQKCVKTQFAEGDGLNQKHERMCIKFNQRPMQKRKGQDTSITSVNSSGQDSGIAEARCPCGHSSLHTSEESSGGSYEDSLKSNRNQEARSKPYRQEDPRRRASFAHQPLDTRQYHYRRQSFSENMQRHFPSFERVGSGTKITRQISTPNVSNVGQPYFIHNHKKELRRKEALNEPAADYDNSEGEDVFDTRMDRRASGKLKRGKFVELFVATPAAADAVRRQGSERLMFARPL

Uniprot

H9JYB0 A0A2H1WZQ9 A0A2A4J2L7 A0A2W1BKV0 A0A437BVX0 A0A194PXX4 + More
A0A194RE77 A0A212FF98

Pubmed

19121390 28756777 26354079 22118469

EMBL

BABH01042936 ODYU01012274 SOQ58492.1 NWSH01003839 PCG65774.1 KZ149985 + More
PZC75702.1 RSAL01000004 RVE54564.1 KQ459589 KPI97604.1 KQ460500 KPJ14231.1 AGBW02008842 OWR52408.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000053268 UP000053240 UP000007151 + More

PRIDE

H9JYB0

Pfam

PF00028 Cadherin

Interpro

IPR002126   Cadherin-like_dom        + More
IPR015919   Cadherin-like_sf
IPR020894   Cadherin_CS

SUPFAM

SSF49313 SSF49313

ProteinModelPortal

H9JYB0 A0A2H1WZQ9 A0A2A4J2L7 A0A2W1BKV0 A0A437BVX0 A0A194PXX4 + More
A0A194RE77 A0A212FF98

KEGG

105842666 no KO assigned | (RefSeq) cadherin-89D-like

GO

GO:0016021 GO:0005509 GO:0007156 GO:0005886

Length:

311

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00513

Exp number, first 60 AAs:

0.00037

Total prob of N-in:

0.04944

outside

1 - 311

Pi

2.830517

Theta

12.750662

Tajima's D

-2.237358

CLR

230.125093

CSRT

0.00519974001299935

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics